RchiOBHm_Chr7g0229111
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000615
Physical Location & Seq
Forward (+)
52488264 .. 52490654
2391 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20524

Sequence Viewer

Length: 840 bp
ATGGGTGGACGTTCGATTGATGTTGAGCTGGAACTTCCCTCTTCTAATGCTGCTCGCACTATGGTCTTAGTTGGACGCACTGGTAATGGAAAAAGTGCAACAGGCAACAGCATTCTTGGCAAAAAAGCCTTCAATTCCAGGCGTAGCTCTAGTACTGTCACGACCACTACTGAATTGAAGACTGCTACCTTGGAAGATGGACAACAAATTAATGTTATAGACACTCCTGGTCTTTTTGATAATTCTGCCAAATCAGACTTTATTGGCAAAGAAATTGTCCAATGCATTAAATTGGCCAAGGATGGAATCGATGCTGTTCTTGTGGTTCTCTCAACTAAAACTCGCTTATCAGAAGAAGAGGAGTCTGCAATCCGTAGCTTGGAAACTCTATTTGGAAGTAAAATCTTTGACTATATGATTATTGTCTTTACGGGGGGAGATGAGTTGGAAGAAAATGATAGCACTTTGGAAGATTATTTGGGCCGTGATTGCCCGGAGCCTTTGAAGGAAATCCTTGGTCTGTGTGGAAATCGCTGTGTGCTTTTTGATAACAAGACTAAGGATGAAAGCAAGAGGGTCGAACAAGTGCAGCGGCTTCTCTCGCTTGTAAACTTGGTTACAGCACAGAATGGTGGGCGGCCATACACGGATGAGATATTTGCTGAAGTGAAGAAAGAGGCCATGAAACTTCGTGATCAACAAGAAGAGGTTGCTTCTTTGGAGGGGTATTCAAAACGAGACATATCTCATTTGAATGAGCAGATGCAGCTTGCACATGATCTGCAGCTTAAACGAATTACTGAGATGGTAAATTTTCATCTGCATTTTGTTTGCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

279

Amino Acids

30.97

Weight (kDa)

5.08

Isoelectric Point (pI)

40.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIG1 PF04548 20 - 234 3e-81 AIG1 family
MMR_HSR1 PF01926 21 - 127 1.3e-11 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000615)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33970 AT1G33970 AT1G33970 AT1G33970 AT1G33970
fragaria_vesca FvH4_5g32530 FvH4_5g32530
malus_domestica MD15G1403700.v1.1
prunus_persica Prupe.1G549700_v2.0.a1 Prupe.1G549700_v2.0.a1
pyrus_communis pycom15g36100
rosa_chinensis RchiOBHm_Chr7g0226331 RchiOBHm_Chr7g0229101 RchiOBHm_Chr7g0229111 RchiOBHm_Chr7g0229141 RchiOBHm_Chr7g0229161 RchiOBHm_Chr7g0229171 RchiOBHm_Chr7g0229211 RchiOBHm_Chr7g0229241 RchiOBHm_Chr7g0229381 RchiOBHm_Chr7g0229761 RchiOBHm_Chr7g0229911
rosa_laevigata RLG00000000796 RLG00000001464 RLG00000001466 RLG00000001469 RLG00000001523 RLG00000001526 RLG00000001529 RLG00000001530 RLG00000001749 RLG00000001913 RLG00000002114 RLG00000002115 RLG00000023248 RLG00000023250
rosa_multiflora Rmu_co8281135.1_g000001 Rmu_sc0000271.1_g000002 Rmu_sc0000271.1_g000007 Rmu_sc0000271.1_g000014 Rmu_sc0000693.1_g000012 Rmu_sc0000693.1_g000015 Rmu_sc0000693.1_g000023 Rmu_sc0001044.1_g000005 Rmu_sc0006689.1_g000007 Rmu_sc0012733.1_g000005
rosa_roxburghii Rroxscaffold_3G00230540 Rroxscaffold_3G00230590 Rroxscaffold_3G00230600 Rroxscaffold_3G00230700 Rroxscaffold_3G00230710 Rroxscaffold_3G00232980 Rroxscaffold_3G00237610
rosa_rugosa Rorug07G0203800 Rorug07G0203900 Rorug07G0256100 Rorug07G0256400 Rorug07G0256400 Rorug07G0256400 Rorug07G0256500 Rorug07G0256600 Rorug07G0256600 Rorug07G0257100 Rorug07G0257200 Rorug07G0257300 Rorug07G0257400
rosa_samantha Rh7DG401100 Rh7DG401300 Rh7DG401900 Rh7DG402100 Rh7DG402300 Rh7DG402700
rosa_wichuraiana Rw0G001910 Rw0G001930 Rw0G001940 Rw7G033790 Rw7G033810 Rw7G033840 Rw7G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 592, 637
AcoI YGGCCR 2 cut(s) 294, 638
AcsI RAATTY 1 cut(s) 811
AcuI CTGAAG 1 cut(s) 684
AfaI GTAC 1 cut(s) 154
AfiI CCNNNNNNNGG 1 cut(s) 379
AgsI TTSAA 5 cut(s) 133, 178, 505, 732, 754
AjnI CCWGG 2 cut(s) 137, 226
AjuI GAANNNNNNNTTGG 2 cut(s) 375, 407
AluBI AGCT 5 cut(s) 28, 147, 378, 769, 787
AluI AGCT 5 cut(s) 28, 147, 378, 769, 787
Alw26I GTCTC 1 cut(s) 732
AoxI GGCC 4 cut(s) 294, 481, 638, 678
ApeKI GCWGC 4 cut(s) 50, 589, 766, 784
ApoI RAATTY 1 cut(s) 811
ArsI GACNNNNNNTTYG 2 cut(s) 261, 293
AseI ATTAAT 1 cut(s) 210
AspS9I GGNCC 1 cut(s) 481
AsuC2I CCSGG 1 cut(s) 494
BalI TGGCCA 1 cut(s) 296
BbsI GAAGAC 1 cut(s) 185
BbvI GCAGC 4 cut(s) 37, 601, 778, 796
BccI CCATC 3 cut(s) 191, 296, 799
BceAI ACGGC 1 cut(s) 468
BcgI CGANNNNNNTGC 2 cut(s) 559, 593
BciT130I CCWGG 2 cut(s) 139, 228
BclI TGATCA 1 cut(s) 694
BcnI CCSGG 1 cut(s) 494
BcoDI GTCTC 1 cut(s) 732
BfaI CTAG 1 cut(s) 150
BfmI CTRYAG 1 cut(s) 782
BisI GCNGC 6 cut(s) 51, 590, 593, 638, 767, 785
BlsI GCNGC 6 cut(s) 52, 591, 594, 639, 768, 786
BmcAI AGTACT 1 cut(s) 154
Bme1390I CCNGG 3 cut(s) 139, 228, 494
BmgT120I GGNCC 1 cut(s) 481
BmiI GGNNCC 1 cut(s) 498
BmrFI CCNGG 3 cut(s) 139, 228, 494
BmsI GCATC 2 cut(s) 301, 753
BpiI GAAGAC 1 cut(s) 185
BpuMI CCSGG 1 cut(s) 494
Bsa29I ATCGAT 1 cut(s) 309
BsaJI CCNNGG 3 cut(s) 189, 297, 514
Bsc4I CCNNNNNNNGG 1 cut(s) 379
Bse1I ACTGG 1 cut(s) 85
BseBI CCWGG 2 cut(s) 139, 228
BseCI ATCGAT 1 cut(s) 309
BseDI CCNNGG 3 cut(s) 189, 297, 514
BseGI GGATG 3 cut(s) 307, 568, 655
BseLI CCNNNNNNNGG 1 cut(s) 379
BseMII CTCAG 1 cut(s) 792
BseNI ACTGG 1 cut(s) 85
BseRI GAGGAG 1 cut(s) 374
BseXI GCAGC 4 cut(s) 37, 601, 778, 796
BsgI GTGCAG 1 cut(s) 608
BshFI GGCC 4 cut(s) 296, 483, 640, 680
BshVI ATCGAT 1 cut(s) 309
BsiSI CCGG 1 cut(s) 494
BslI CCNNNNNNNGG 1 cut(s) 379
BsmAI GTCTC 1 cut(s) 732
BsmI GAATGC 1 cut(s) 111
BsnI GGCC 4 cut(s) 296, 483, 640, 680
Bsp143I GATC 2 cut(s) 694, 778
BspACI CCGC 2 cut(s) 592, 637
BspANI GGCC 4 cut(s) 296, 483, 640, 680
BspCNI CTCAG 1 cut(s) 793
BspDI ATCGAT 1 cut(s) 309
BspLI GGNNCC 1 cut(s) 498
BspMAI CTGCAG 1 cut(s) 786
BsrI ACTGG 1 cut(s) 85
BssECI CCNNGG 3 cut(s) 189, 297, 514
BssMI GATC 2 cut(s) 694, 778
BssT1I CCWWGG 3 cut(s) 189, 297, 514
Bst2UI CCWGG 2 cut(s) 139, 228
Bst4CI ACNGT 1 cut(s) 157
Bst6I CTCTTC 3 cut(s) 46, 351, 699
BstC8I GCNNGC 2 cut(s) 55, 771
BstDEI CTNAG 3 cut(s) 67, 558, 801
BstF5I GGATG 3 cut(s) 307, 568, 655
BstKTI GATC 2 cut(s) 697, 781
BstMAI GTCTC 1 cut(s) 732
BstMBI GATC 2 cut(s) 694, 778
BstMWI GCNNNNNNNGC 4 cut(s) 117, 489, 601, 766
BstNI CCWGG 2 cut(s) 139, 228
BstSCI CCNGG 3 cut(s) 137, 226, 492
BstSFI CTRYAG 1 cut(s) 782
BstV1I GCAGC 4 cut(s) 37, 601, 778, 796
BstV2I GAAGAC 1 cut(s) 185
Bsu15I ATCGAT 1 cut(s) 309
BsuRI GGCC 4 cut(s) 296, 483, 640, 680
BsuTUI ATCGAT 1 cut(s) 309
BtsCI GGATG 3 cut(s) 307, 568, 655
BtsIMutI CAGTG 1 cut(s) 78
Cac8I GCNNGC 2 cut(s) 55, 771
Cfr13I GGNCC 1 cut(s) 481
ClaI ATCGAT 1 cut(s) 309
CseI GACGC 1 cut(s) 84
Csp6I GTAC 1 cut(s) 153
CviAII CATG 2 cut(s) 682, 776
CviQI GTAC 1 cut(s) 153
DdeI CTNAG 3 cut(s) 67, 558, 801
DpnI GATC 2 cut(s) 696, 780
DpnII GATC 2 cut(s) 694, 778
EaeI YGGCCR 2 cut(s) 294, 638
Eam1104I CTCTTC 3 cut(s) 46, 351, 699
EarI CTCTTC 3 cut(s) 46, 351, 699
Eco130I CCWWGG 3 cut(s) 189, 297, 514
Eco57I CTGAAG 1 cut(s) 684
EcoRII CCWGG 2 cut(s) 137, 226
EcoT14I CCWWGG 3 cut(s) 189, 297, 514
EcoT22I ATGCAT 1 cut(s) 287
ErhI CCWWGG 3 cut(s) 189, 297, 514
FaeI CATG 2 cut(s) 685, 779
FaiI YATR 8 cut(s) 62, 218, 414, 416, 643, 683, 743, 777
FatI CATG 2 cut(s) 681, 775
FbaI TGATCA 1 cut(s) 694
Fnu4HI GCNGC 6 cut(s) 51, 590, 593, 638, 767, 785
FokI GGATG 3 cut(s) 314, 575, 662
Fsp4HI GCNGC 6 cut(s) 51, 590, 593, 638, 767, 785
FspBI CTAG 1 cut(s) 150
GluI GCNGC 6 cut(s) 51, 590, 593, 638, 767, 785
HaeIII GGCC 4 cut(s) 296, 483, 640, 680
HapII CCGG 1 cut(s) 494
HgaI GACGC 1 cut(s) 84
Hin1II CATG 2 cut(s) 685, 779
HinfI GANTC 2 cut(s) 306, 362
HpaII CCGG 1 cut(s) 494
Hpy166II GTNNAC 2 cut(s) 8, 610
Hpy188I TCNGA 2 cut(s) 256, 352
Hpy188III TCNNGA 2 cut(s) 160, 692
Hpy8I GTNNAC 2 cut(s) 8, 610
HpyAV CCTTC 2 cut(s) 139, 499
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4IV ACGT 1 cut(s) 10
HpyCH4V TGCA 9 cut(s) 98, 285, 368, 589, 766, 773, 784, 823, 834
HpyF10VI GCNNNNNNNGC 4 cut(s) 117, 489, 601, 766
HpyF3I CTNAG 3 cut(s) 67, 558, 801
HpySE526I ACGT 1 cut(s) 10
Hsp92II CATG 2 cut(s) 685, 779
Ksp22I TGATCA 1 cut(s) 694
Kzo9I GATC 2 cut(s) 694, 778
LmnI GCTCC 1 cut(s) 496
LpnPI CCDG 8 cut(s) 14, 66, 87, 124, 151, 213, 240, 507
Lsp1109I GCAGC 4 cut(s) 37, 601, 778, 796
LweI GCATC 2 cut(s) 301, 753
MaeI CTAG 1 cut(s) 150
MaeII ACGT 1 cut(s) 10
MaeIII GTNAC 2 cut(s) 157, 616
MalI GATC 2 cut(s) 696, 780
MboI GATC 2 cut(s) 694, 778
MboII GAAGA 9 cut(s) 33, 190, 206, 365, 368, 461, 482, 682, 716
MlsI TGGCCA 1 cut(s) 296
MluCI AATT 8 cut(s) 133, 173, 207, 241, 273, 290, 795, 811
MluNI TGGCCA 1 cut(s) 296
MlyI GAGTC 1 cut(s) 371
MmeI TCCRAC 2 cut(s) 52, 426
MnlI CCTC 6 cut(s) 49, 352, 567, 670, 700, 715
Mox20I TGGCCA 1 cut(s) 296
Mph1103I ATGCAT 1 cut(s) 287
MscI TGGCCA 1 cut(s) 296
MseI TTAA 4 cut(s) 210, 288, 789, 838
MslI CAYNNNNRTG 1 cut(s) 753
Msp20I TGGCCA 1 cut(s) 296
MspA1I CMGCKG 1 cut(s) 592
MspI CCGG 1 cut(s) 494
MspR9I CCNGG 3 cut(s) 139, 228, 494
Mva1269I GAATGC 1 cut(s) 111
MvaI CCWGG 2 cut(s) 139, 228
MwoI GCNNNNNNNGC 4 cut(s) 117, 489, 601, 766
NciI CCSGG 1 cut(s) 494
NdeII GATC 2 cut(s) 694, 778
NlaIII CATG 2 cut(s) 685, 779
NlaIV GGNNCC 1 cut(s) 498
NmuCI GTSAC 1 cut(s) 157
NsiI ATGCAT 1 cut(s) 287
PctI GAATGC 1 cut(s) 111
PfeI GAWTC 1 cut(s) 306
PkrI GCNGC 6 cut(s) 52, 591, 594, 639, 768, 786
PleI GAGTC 1 cut(s) 370
PpsI GAGTC 1 cut(s) 370
PshBI ATTAAT 1 cut(s) 210
Psp6I CCWGG 2 cut(s) 137, 226
PspGI CCWGG 2 cut(s) 137, 226
PspN4I GGNNCC 1 cut(s) 498
PspPI GGNCC 1 cut(s) 481
PstI CTGCAG 1 cut(s) 786
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
RseI CAYNNNNRTG 1 cut(s) 753
SaqAI TTAA 4 cut(s) 210, 288, 789, 838
SatI GCNGC 6 cut(s) 51, 590, 593, 638, 767, 785
Sau3AI GATC 2 cut(s) 694, 778
Sau96I GGNCC 1 cut(s) 481
ScaI AGTACT 1 cut(s) 154
SchI GAGTC 1 cut(s) 371
ScrFI CCNGG 3 cut(s) 139, 228, 494
SetI ASST 8 cut(s) 13, 30, 149, 191, 380, 711, 771, 789
SfaNI GCATC 2 cut(s) 301, 753
SfcI CTRYAG 1 cut(s) 782
SmiMI CAYNNNNRTG 1 cut(s) 753
Sse9I AATT 8 cut(s) 133, 173, 207, 241, 273, 290, 795, 811
SsiI CCGC 2 cut(s) 592, 637
SspMI CTAG 1 cut(s) 150
StyD4I CCNGG 3 cut(s) 137, 226, 492
StyI CCWWGG 3 cut(s) 189, 297, 514
TaaI ACNGT 1 cut(s) 157
TaiI ACGT 1 cut(s) 13
TaqI TCGA 3 cut(s) 14, 309, 579
TasI AATT 8 cut(s) 133, 173, 207, 241, 273, 290, 795, 811
TatI WGTACW 1 cut(s) 152
TauI GCSGC 2 cut(s) 595, 640
TfiI GAWTC 1 cut(s) 306
Tru1I TTAA 4 cut(s) 210, 288, 789, 838
Tru9I TTAA 4 cut(s) 210, 288, 789, 838
TscAI CASTG 1 cut(s) 85
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 4 cut(s) 50, 589, 766, 784
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 3 cut(s) 579, 698, 806
TspGWI ACGGA 2 cut(s) 362, 662
TspRI CASTG 1 cut(s) 85
VspI ATTAAT 1 cut(s) 210
XapI RAATTY 1 cut(s) 811
XspI CTAG 1 cut(s) 150
ZrmI AGTACT 1 cut(s) 154
Zsp2I ATGCAT 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.