Rw0G001930
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00060
OG0000615
Physical Location & Seq
Reverse (-)
146181 .. 149005
2825 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G001930.1

Sequence Viewer

Length: 1005 bp
ATGGATGGAAGTTCGATTGATGTTGTCAGGGAACATCCCGTTTCTAATGCTGCTCGCACTGTGGTCTTAGTTGGACGCACTGGTAATGGAAAAAGTGCAACAGGCAACAGCATCCTTGGCGAAAGAGCCTTCATTTCCAAGCGTAGCTCTAGGGGTGTCACCACCACTACTGAATTGAAGACTGCTATCTTGAGAGATGGACAACAAATTAACGTTGTAGACACTCCTGGTCTTTTTGATAGTTCTGTCAAACCAGACGTTATTAGCAAAGAAATTGTCCAATGCATTAAATTGGCCAAGGATGGAATCCATGCTATTCTTGTGATTCTCTCAACTAGAGCTCGGTTTTCACAAGAAGAGCAATCTGCAATCCTTGGCTTGCAAGCTCTATTTGGAAGTAAAATATTTGACTATATGATTGTTGTCTTTTCGGGAGGAGATGAGCTTGAAGAAAGTGATGAGACGTTGGAAGATTATTTGGGCGGCCGTGATTGCCCGGAGCCTTTGAAGGAAATCCTTGGTCTGTGTGGAAATCGCTGTGTTCTTTTTGATAACAAGACCAAGGATGAAAGCAAGAGGGTCGAACAAGTTCAGCGGCTTCTCTCGCTTGTAAACTTGGTTATAGCACAGAATGGTGGGCGGCCATACACGGATGAGATATTTGCTGAAGTGAAGAAAGAGGCTATGAAACTTCGTGATCAACAAGAAGATGTTGCTTCAAAGGGGTATTCAAAACAAGAAATATCGCATTTGAATGAGCAGATGCAGCGTGCACATGATCTGCAGCTTAAACGAATTACTGAGATGATTGAGTCAAACATGAGAGAGAAAACCATGATGCTTGAACAAAAGTTAGCAGATGAACATGCTGCACGACTAAGAGCAGAAGAGACTGCCCAAAAGGCTCAACAAAGTTCTCAGGATGAAATCCGGAAGCTTAGAGGTGATCTAGAAGCAGAGAGGCAGCGGCCGAAACCGAGAACGTCCAGGTGTGCTATTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

334

Amino Acids

37.32

Weight (kDa)

6.08

Isoelectric Point (pI)

44.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RsgA_GTPase PF03193 18 - 78 1e-06 RsgA GTPase
AIG1 PF04548 19 - 235 6.8e-78 AIG1 family
MMR_HSR1 PF01926 20 - 120 5.7e-10 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000615)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33970 AT1G33970 AT1G33970 AT1G33970 AT1G33970
fragaria_vesca FvH4_5g32530 FvH4_5g32530
malus_domestica MD15G1403700.v1.1
prunus_persica Prupe.1G549700_v2.0.a1 Prupe.1G549700_v2.0.a1
pyrus_communis pycom15g36100
rosa_chinensis RchiOBHm_Chr7g0226331 RchiOBHm_Chr7g0229101 RchiOBHm_Chr7g0229111 RchiOBHm_Chr7g0229141 RchiOBHm_Chr7g0229161 RchiOBHm_Chr7g0229171 RchiOBHm_Chr7g0229211 RchiOBHm_Chr7g0229241 RchiOBHm_Chr7g0229381 RchiOBHm_Chr7g0229761 RchiOBHm_Chr7g0229911
rosa_laevigata RLG00000000796 RLG00000001464 RLG00000001466 RLG00000001469 RLG00000001523 RLG00000001526 RLG00000001529 RLG00000001530 RLG00000001749 RLG00000001913 RLG00000002114 RLG00000002115 RLG00000023248 RLG00000023250
rosa_multiflora Rmu_co8281135.1_g000001 Rmu_sc0000271.1_g000002 Rmu_sc0000271.1_g000007 Rmu_sc0000271.1_g000014 Rmu_sc0000693.1_g000012 Rmu_sc0000693.1_g000015 Rmu_sc0000693.1_g000023 Rmu_sc0001044.1_g000005 Rmu_sc0006689.1_g000007 Rmu_sc0012733.1_g000005
rosa_roxburghii Rroxscaffold_3G00230540 Rroxscaffold_3G00230590 Rroxscaffold_3G00230600 Rroxscaffold_3G00230700 Rroxscaffold_3G00230710 Rroxscaffold_3G00232980 Rroxscaffold_3G00237610
rosa_rugosa Rorug07G0203800 Rorug07G0203900 Rorug07G0256100 Rorug07G0256400 Rorug07G0256400 Rorug07G0256400 Rorug07G0256500 Rorug07G0256600 Rorug07G0256600 Rorug07G0257100 Rorug07G0257200 Rorug07G0257300 Rorug07G0257400
rosa_samantha Rh7DG401100 Rh7DG401300 Rh7DG401900 Rh7DG402100 Rh7DG402300 Rh7DG402700
rosa_wichuraiana Rw0G001910 Rw0G001930 Rw0G001940 Rw7G033790 Rw7G033810 Rw7G033840 Rw7G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 219
AccIII TCCGGA 1 cut(s) 930
AciI CCGC 4 cut(s) 483, 595, 640, 967
AclI AACGTT 1 cut(s) 213
AcoI YGGCCR 4 cut(s) 294, 484, 641, 968
AcuI CTGAAG 1 cut(s) 687
AgsI TTSAA 7 cut(s) 178, 449, 508, 720, 732, 754, 845
AjnI CCWGG 2 cut(s) 226, 986
AluBI AGCT 6 cut(s) 147, 341, 386, 445, 787, 937
AluI AGCT 6 cut(s) 147, 341, 386, 445, 787, 937
Alw21I GWGCWC 2 cut(s) 343, 775
Alw26I GTCTC 2 cut(s) 455, 884
Alw44I GTGCAC 1 cut(s) 771
Aor13HI TCCGGA 1 cut(s) 930
AoxI GGCC 4 cut(s) 294, 484, 641, 968
ApaLI GTGCAC 1 cut(s) 771
ApeKI GCWGC 5 cut(s) 50, 766, 784, 869, 964
ArsI GACNNNNNNTTYG 2 cut(s) 261, 293
Asp700I GAANNNNTTC 1 cut(s) 588
AsuC2I CCSGG 1 cut(s) 497
AsuHPI GGTGA 2 cut(s) 151, 956
BaeGI GKGCMC 1 cut(s) 775
BalI TGGCCA 1 cut(s) 296
BanII GRGCYC 1 cut(s) 343
BbsI GAAGAC 1 cut(s) 185
Bbv12I GWGCWC 2 cut(s) 343, 775
BbvI GCAGC 5 cut(s) 37, 778, 796, 856, 976
BccI CCATC 2 cut(s) 191, 296
BceAI ACGGC 1 cut(s) 471
BcgI CGANNNNNNTGC 2 cut(s) 562, 596
BciT130I CCWGG 2 cut(s) 228, 988
BclI TGATCA 1 cut(s) 697
BcnI CCSGG 1 cut(s) 497
BcoDI GTCTC 2 cut(s) 455, 884
BfaI CTAG 3 cut(s) 150, 336, 950
BfmI CTRYAG 1 cut(s) 782
BglI GCCNNNNNGGC 1 cut(s) 902
BisI GCNGC 9 cut(s) 51, 484, 596, 641, 767, 785, 870, 965, 968
BlsI GCNGC 9 cut(s) 52, 485, 597, 642, 768, 786, 871, 966, 969
Bme1390I CCNGG 3 cut(s) 228, 497, 988
BmiI GGNNCC 1 cut(s) 501
BmrFI CCNGG 3 cut(s) 228, 497, 988
BmsI GCATC 3 cut(s) 120, 753, 828
BpiI GAAGAC 1 cut(s) 185
BpuEI CTTGAG 1 cut(s) 211
BpuMI CCSGG 1 cut(s) 497
BsaJI CCNNGG 5 cut(s) 115, 297, 373, 517, 561
BsaWI WCCGGW 1 cut(s) 930
Bse1I ACTGG 1 cut(s) 85
BseAI TCCGGA 1 cut(s) 930
BseBI CCWGG 2 cut(s) 228, 988
BseDI CCNNGG 5 cut(s) 115, 297, 373, 517, 561
BseGI GGATG 7 cut(s) 10, 34, 111, 307, 571, 658, 928
BseMII CTCAG 2 cut(s) 792, 932
BseNI ACTGG 1 cut(s) 85
BseRI GAGGAG 1 cut(s) 450
BseSI GKGCMC 1 cut(s) 775
BseX3I CGGCCG 2 cut(s) 484, 968
BseXI GCAGC 5 cut(s) 37, 778, 796, 856, 976
BsgI GTGCAG 1 cut(s) 855
Bsh1285I CGRYCG 2 cut(s) 487, 971
BshFI GGCC 4 cut(s) 296, 486, 643, 970
BsiEI CGRYCG 2 cut(s) 487, 971
BsiHKAI GWGCWC 2 cut(s) 343, 775
BsiSI CCGG 2 cut(s) 497, 931
BsmAI GTCTC 2 cut(s) 455, 884
BsmBI CGTCTC 1 cut(s) 455
BsnI GGCC 4 cut(s) 296, 486, 643, 970
Bsp1286I GDGCHC 2 cut(s) 343, 775
Bsp13I TCCGGA 1 cut(s) 930
Bsp143I GATC 3 cut(s) 697, 778, 946
BspACI CCGC 4 cut(s) 483, 595, 640, 967
BspANI GGCC 4 cut(s) 296, 486, 643, 970
BspCNI CTCAG 2 cut(s) 793, 931
BspEI TCCGGA 1 cut(s) 930
BspLI GGNNCC 1 cut(s) 501
BspMAI CTGCAG 1 cut(s) 786
BspQI GCTCTTC 1 cut(s) 351
BsrI ACTGG 1 cut(s) 85
BssECI CCNNGG 5 cut(s) 115, 297, 373, 517, 561
BssMI GATC 3 cut(s) 697, 778, 946
BssT1I CCWWGG 5 cut(s) 115, 297, 373, 517, 561
Bst2UI CCWGG 2 cut(s) 228, 988
Bst4CI ACNGT 1 cut(s) 61
Bst6I CTCTTC 2 cut(s) 351, 882
BstC8I GCNNGC 4 cut(s) 55, 380, 384, 771
BstDEI CTNAG 5 cut(s) 67, 801, 878, 918, 938
BstF5I GGATG 7 cut(s) 10, 34, 111, 307, 571, 658, 928
BstKTI GATC 3 cut(s) 700, 781, 949
BstMAI GTCTC 2 cut(s) 455, 884
BstMBI GATC 3 cut(s) 697, 778, 946
BstMCI CGRYCG 2 cut(s) 487, 971
BstMWI GCNNNNNNNGC 5 cut(s) 117, 492, 604, 766, 902
BstNI CCWGG 2 cut(s) 228, 988
BstNSI RCATGY 1 cut(s) 869
BstSCI CCNGG 3 cut(s) 226, 495, 986
BstSFI CTRYAG 1 cut(s) 782
BstSLI GKGCMC 1 cut(s) 775
BstV1I GCAGC 5 cut(s) 37, 778, 796, 856, 976
BstV2I GAAGAC 1 cut(s) 185
BstZI CGGCCG 2 cut(s) 484, 968
BsuRI GGCC 4 cut(s) 296, 486, 643, 970
BtsCI GGATG 7 cut(s) 10, 34, 111, 307, 571, 658, 928
BtsIMutI CAGTG 2 cut(s) 57, 78
Cac8I GCNNGC 4 cut(s) 55, 380, 384, 771
CseI GACGC 1 cut(s) 84
CviAII CATG 5 cut(s) 311, 776, 820, 835, 866
DdeI CTNAG 5 cut(s) 67, 801, 878, 918, 938
DpnI GATC 3 cut(s) 699, 780, 948
DpnII GATC 3 cut(s) 697, 778, 946
EaeI YGGCCR 4 cut(s) 294, 484, 641, 968
EagI CGGCCG 2 cut(s) 484, 968
Eam1104I CTCTTC 2 cut(s) 351, 882
EarI CTCTTC 2 cut(s) 351, 882
Ecl136II GAGCTC 1 cut(s) 341
EclXI CGGCCG 2 cut(s) 484, 968
Eco130I CCWWGG 5 cut(s) 115, 297, 373, 517, 561
Eco24I GRGCYC 1 cut(s) 343
Eco52I CGGCCG 2 cut(s) 484, 968
Eco53kI GAGCTC 1 cut(s) 341
Eco57I CTGAAG 1 cut(s) 687
EcoICRI GAGCTC 1 cut(s) 341
EcoRII CCWGG 2 cut(s) 226, 986
EcoT14I CCWWGG 5 cut(s) 115, 297, 373, 517, 561
EcoT22I ATGCAT 1 cut(s) 287
EcoT38I GRGCYC 1 cut(s) 343
ErhI CCWWGG 5 cut(s) 115, 297, 373, 517, 561
Esp3I CGTCTC 1 cut(s) 455
FaeI CATG 5 cut(s) 314, 779, 823, 838, 869
FatI CATG 5 cut(s) 310, 775, 819, 834, 865
FbaI TGATCA 1 cut(s) 697
FblI GTMKAC 1 cut(s) 219
Fnu4HI GCNGC 9 cut(s) 51, 484, 596, 641, 767, 785, 870, 965, 968
FokI GGATG 7 cut(s) 17, 21, 98, 314, 578, 665, 935
FriOI GRGCYC 1 cut(s) 343
Fsp4HI GCNGC 9 cut(s) 51, 484, 596, 641, 767, 785, 870, 965, 968
FspBI CTAG 3 cut(s) 150, 336, 950
GluI GCNGC 9 cut(s) 51, 484, 596, 641, 767, 785, 870, 965, 968
HaeIII GGCC 4 cut(s) 296, 486, 643, 970
HapII CCGG 2 cut(s) 497, 931
HgaI GACGC 1 cut(s) 84
Hin1II CATG 5 cut(s) 314, 779, 823, 838, 869
HindIII AAGCTT 1 cut(s) 935
HinfI GANTC 3 cut(s) 306, 325, 812
HpaII CCGG 2 cut(s) 497, 931
HphI GGTGA 2 cut(s) 151, 956
Hpy166II GTNNAC 3 cut(s) 220, 613, 773
Hpy188III TCNNGA 6 cut(s) 190, 432, 695, 920, 931, 950
Hpy8I GTNNAC 3 cut(s) 220, 613, 773
HpyAV CCTTC 2 cut(s) 139, 502
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4IV ACGT 4 cut(s) 213, 258, 464, 983
HpyCH4V TGCA 8 cut(s) 98, 285, 368, 382, 766, 773, 784, 872
HpyF10VI GCNNNNNNNGC 5 cut(s) 117, 492, 604, 766, 902
HpyF3I CTNAG 5 cut(s) 67, 801, 878, 918, 938
HpySE526I ACGT 4 cut(s) 213, 258, 464, 983
Hsp92II CATG 5 cut(s) 314, 779, 823, 838, 869
Kpn2I TCCGGA 1 cut(s) 930
Ksp22I TGATCA 1 cut(s) 697
Kzo9I GATC 3 cut(s) 697, 778, 946
LguI GCTCTTC 1 cut(s) 351
LmnI GCTCC 1 cut(s) 499
Lsp1109I GCAGC 5 cut(s) 37, 778, 796, 856, 976
LweI GCATC 3 cut(s) 120, 753, 828
MaeI CTAG 3 cut(s) 150, 336, 950
MaeII ACGT 4 cut(s) 213, 258, 464, 983
MaeIII GTNAC 1 cut(s) 157
MalI GATC 3 cut(s) 699, 780, 948
MboI GATC 3 cut(s) 697, 778, 946
MboII GAAGA 7 cut(s) 190, 368, 461, 482, 685, 719, 899
MhlI GDGCHC 2 cut(s) 343, 775
MlsI TGGCCA 1 cut(s) 296
MluCI AATT 5 cut(s) 173, 207, 273, 290, 795
MluNI TGGCCA 1 cut(s) 296
MlyI GAGTC 1 cut(s) 821
MmeI TCCRAC 2 cut(s) 52, 447
MnlI CCTC 5 cut(s) 428, 570, 673, 935, 954
Mox20I TGGCCA 1 cut(s) 296
Mph1103I ATGCAT 1 cut(s) 287
MroI TCCGGA 1 cut(s) 930
MroXI GAANNNNTTC 1 cut(s) 588
MscI TGGCCA 1 cut(s) 296
MseI TTAA 3 cut(s) 210, 288, 789
MslI CAYNNNNRTG 1 cut(s) 753
Msp20I TGGCCA 1 cut(s) 296
MspA1I CMGCKG 2 cut(s) 595, 967
MspI CCGG 2 cut(s) 497, 931
MspR9I CCNGG 3 cut(s) 228, 497, 988
MvaI CCWGG 2 cut(s) 228, 988
MwoI GCNNNNNNNGC 5 cut(s) 117, 492, 604, 766, 902
NciI CCSGG 1 cut(s) 497
NdeII GATC 3 cut(s) 697, 778, 946
NlaIII CATG 5 cut(s) 314, 779, 823, 838, 869
NlaIV GGNNCC 1 cut(s) 501
NmuCI GTSAC 1 cut(s) 157
NsiI ATGCAT 1 cut(s) 287
NspI RCATGY 1 cut(s) 869
PciSI GCTCTTC 1 cut(s) 351
PdmI GAANNNNTTC 1 cut(s) 588
PfeI GAWTC 2 cut(s) 306, 325
PkrI GCNGC 9 cut(s) 52, 485, 597, 642, 768, 786, 871, 966, 969
PleI GAGTC 1 cut(s) 820
PpsI GAGTC 1 cut(s) 820
Psp124BI GAGCTC 1 cut(s) 343
Psp1406I AACGTT 1 cut(s) 213
Psp6I CCWGG 2 cut(s) 226, 986
PspGI CCWGG 2 cut(s) 226, 986
PspN4I GGNNCC 1 cut(s) 501
PstI CTGCAG 1 cut(s) 786
RseI CAYNNNNRTG 1 cut(s) 753
SacI GAGCTC 1 cut(s) 343
SapI GCTCTTC 1 cut(s) 351
SaqAI TTAA 3 cut(s) 210, 288, 789
SatI GCNGC 9 cut(s) 51, 484, 596, 641, 767, 785, 870, 965, 968
Sau3AI GATC 3 cut(s) 697, 778, 946
SchI GAGTC 1 cut(s) 821
ScrFI CCNGG 3 cut(s) 228, 497, 988
SduI GDGCHC 2 cut(s) 343, 775
SfaNI GCATC 3 cut(s) 120, 753, 828
SfcI CTRYAG 1 cut(s) 782
SmiMI CAYNNNNRTG 1 cut(s) 753
SmlI CTYRAG 1 cut(s) 190
SmoI CTYRAG 1 cut(s) 190
Sse9I AATT 5 cut(s) 173, 207, 273, 290, 795
SsiI CCGC 4 cut(s) 483, 595, 640, 967
SspI AATATT 1 cut(s) 405
SspMI CTAG 3 cut(s) 150, 336, 950
SstI GAGCTC 1 cut(s) 343
StyD4I CCNGG 3 cut(s) 226, 495, 986
StyI CCWWGG 5 cut(s) 115, 297, 373, 517, 561
TaaI ACNGT 1 cut(s) 61
TaiI ACGT 4 cut(s) 216, 261, 467, 986
TaqI TCGA 2 cut(s) 14, 582
TasI AATT 5 cut(s) 173, 207, 273, 290, 795
TauI GCSGC 4 cut(s) 486, 598, 643, 970
TfiI GAWTC 2 cut(s) 306, 325
Tru1I TTAA 3 cut(s) 210, 288, 789
Tru9I TTAA 3 cut(s) 210, 288, 789
TscAI CASTG 2 cut(s) 64, 85
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 5 cut(s) 50, 766, 784, 869, 964
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 5 cut(s) 121, 582, 701, 876, 939
TspGWI ACGGA 1 cut(s) 665
TspRI CASTG 2 cut(s) 64, 85
VneI GTGCAC 1 cut(s) 771
XbaI TCTAGA 1 cut(s) 949
XceI RCATGY 1 cut(s) 869
XmiI GTMKAC 1 cut(s) 219
XmnI GAANNNNTTC 1 cut(s) 588
XspI CTAG 3 cut(s) 150, 336, 950
Zsp2I ATGCAT 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.