Rroxscaffold_3G00237610
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000615
Physical Location & Seq
Forward (+)
25295808 .. 25301496
5689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00237610.1

Sequence Viewer

Length: 1149 bp
ATGGATGGACCTTCGATTAATGTTGACCAGGGACTTCCCTTTTCTAATGCTGTTCGCACTATGGTCTTAGTTGGACGCACTGGTAATGGAAAAAGTGCAACAGGCAACAGCATTCTTGGCAAAAAAGCCTTCATATCCAAGCGTAGCTCTAGTGGTGTCACAACCGCTACTGAATTAAAGACTGCTATCTTGGGAGATGGACAACAAATTAATGTTATAGACACTCCTGGTCTTTTTGATAATTCTGCCAAATCAGACTTTATTGGCAAAGAAATTGCCCAATGCATTAAATTGGCCGAGGATGGGATCCATGCTGTTCTTGTGGTTCTCTCAATTAGAACTCGCTTTACAAAAGAAGAGGAGTCTGCACTCCGTAGCTTGGAAGCTCTATTTGGAAGTAAAATTTTTGACTATATGATTGTTGTTTTTACTGGAGGAGATGAGTTGGAAGAAAATGATGAGACTTTGGAAGATTATTTGGGCGATGATTGCCCGAAGCCTTTGAAGGGAATCCTTGGTCTGTGTGGAAATCGATGTGTGCTTTTTGATAACAAGACTACGGATAAAAGCAAGAGGGTCGAACAAGTGCAGCAGCTTCTCTCGCTTGTAAACTCGGTTATAGCACATAATGGTGGGCAACCATACACAGATGAGATATTTGCTGAAGTGAAGAAAGGGTCTATGAAACTTCGTGATCAACAAGAAGAGGTTGCTTCGAAGGGGTATTCAAAACAAGAAATAAATCTTTTGAATGAGCAGATGCGGCGTCAATATGATCTGCAGCTTAAACAAATTACTGAGATGCTTGAGTTAAAGATGAGAGTGCATACCATGATGCTTGAACAAAAGTTAGCAGATGAACATGCTACACGACTAAAAGCAGAATTGCAAATTGCCCGAGAGGCTCAACAAAGGTCTGAGAATGAGATCCAACGGCTTAGATACGATCGACAAGCAGAGAAGCGGATACGCAATGAAAACAGCAGAGGCAGCCGCATAGGGCTCGGAGACATGTGTCATTTAATGTATCTTGGAGCAAAGAAGGAGAAAAGAAGTAAAAGAGGGGTTGAAAGGCAAAATCGGCAAATCTTCCTGTACAGATCAGTCAAACTCGACAGAGCACTGAGACCAGCTCACAACGATCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

382

Amino Acids

43.02

Weight (kDa)

8.78

Isoelectric Point (pI)

44.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIG1 PF04548 20 - 233 6e-81 AIG1 family
MMR_HSR1 PF01926 21 - 127 4.1e-10 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000615)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33970 AT1G33970 AT1G33970 AT1G33970 AT1G33970
fragaria_vesca FvH4_5g32530 FvH4_5g32530
malus_domestica MD15G1403700.v1.1
prunus_persica Prupe.1G549700_v2.0.a1 Prupe.1G549700_v2.0.a1
pyrus_communis pycom15g36100
rosa_chinensis RchiOBHm_Chr7g0226331 RchiOBHm_Chr7g0229101 RchiOBHm_Chr7g0229111 RchiOBHm_Chr7g0229141 RchiOBHm_Chr7g0229161 RchiOBHm_Chr7g0229171 RchiOBHm_Chr7g0229211 RchiOBHm_Chr7g0229241 RchiOBHm_Chr7g0229381 RchiOBHm_Chr7g0229761 RchiOBHm_Chr7g0229911
rosa_laevigata RLG00000000796 RLG00000001464 RLG00000001466 RLG00000001469 RLG00000001523 RLG00000001526 RLG00000001529 RLG00000001530 RLG00000001749 RLG00000001913 RLG00000002114 RLG00000002115 RLG00000023248 RLG00000023250
rosa_multiflora Rmu_co8281135.1_g000001 Rmu_sc0000271.1_g000002 Rmu_sc0000271.1_g000007 Rmu_sc0000271.1_g000014 Rmu_sc0000693.1_g000012 Rmu_sc0000693.1_g000015 Rmu_sc0000693.1_g000023 Rmu_sc0001044.1_g000005 Rmu_sc0006689.1_g000007 Rmu_sc0012733.1_g000005
rosa_roxburghii Rroxscaffold_3G00230540 Rroxscaffold_3G00230590 Rroxscaffold_3G00230600 Rroxscaffold_3G00230700 Rroxscaffold_3G00230710 Rroxscaffold_3G00232980 Rroxscaffold_3G00237610
rosa_rugosa Rorug07G0203800 Rorug07G0203900 Rorug07G0256100 Rorug07G0256400 Rorug07G0256400 Rorug07G0256400 Rorug07G0256500 Rorug07G0256600 Rorug07G0256600 Rorug07G0257100 Rorug07G0257200 Rorug07G0257300 Rorug07G0257400
rosa_samantha Rh7DG401100 Rh7DG401300 Rh7DG401900 Rh7DG402100 Rh7DG402300 Rh7DG402700
rosa_wichuraiana Rw0G001910 Rw0G001930 Rw0G001940 Rw7G033790 Rw7G033810 Rw7G033840 Rw7G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 165, 763, 964, 994
AclWI GGATC 4 cut(s) 301, 314, 922, 1136
AcoI YGGCCR 1 cut(s) 294
AcsI RAATTY 1 cut(s) 402
AcuI CTGAAG 1 cut(s) 684
AcyI GRCGYC 1 cut(s) 766
AfaI GTAC 1 cut(s) 1097
AfiI CCNNNNNNNGG 3 cut(s) 303, 379, 506
AflIII ACRYGT 1 cut(s) 1011
AgsI TTSAA 5 cut(s) 505, 729, 751, 842, 1070
AjnI CCWGG 2 cut(s) 27, 226
AjuI GAANNNNNNNTTGG 2 cut(s) 375, 407
AluBI AGCT 6 cut(s) 147, 378, 386, 595, 784, 1133
AluI AGCT 6 cut(s) 147, 378, 386, 595, 784, 1133
Alw21I GWGCWC 1 cut(s) 1123
Alw26I GTCTC 3 cut(s) 455, 1002, 1120
AlwI GGATC 4 cut(s) 301, 314, 922, 1136
Ama87I CYCGRG 1 cut(s) 897
AoxI GGCC 1 cut(s) 294
ApeKI GCWGC 4 cut(s) 589, 592, 781, 990
ApoI RAATTY 1 cut(s) 402
AseI ATTAAT 2 cut(s) 18, 210
AspS9I GGNCC 1 cut(s) 8
AsuII TTCGAA 1 cut(s) 716
AvaI CYCGRG 1 cut(s) 897
AvaII GGWCC 1 cut(s) 8
BamHI GGATCC 1 cut(s) 306
BanII GRGCYC 1 cut(s) 1005
Bbv12I GWGCWC 1 cut(s) 1123
BbvI GCAGC 4 cut(s) 601, 604, 793, 1002
BccI CCATC 2 cut(s) 191, 296
BceAI ACGGC 1 cut(s) 950
BcgI CGANNNNNNTGC 4 cut(s) 559, 593, 985, 1019
BciT130I CCWGG 2 cut(s) 29, 228
BciVI GTATCC 1 cut(s) 960
BclI TGATCA 1 cut(s) 694
BcoDI GTCTC 3 cut(s) 455, 1002, 1120
BfaI CTAG 1 cut(s) 150
BfmI CTRYAG 1 cut(s) 779
BfuI GTATCC 1 cut(s) 960
BglI GCCNNNNNGGC 1 cut(s) 902
BisI GCNGC 6 cut(s) 590, 593, 764, 782, 991, 994
BlsI GCNGC 6 cut(s) 591, 594, 765, 783, 992, 995
Bme1390I CCNGG 2 cut(s) 29, 228
Bme18I GGWCC 1 cut(s) 8
BmeT110I CYCGRG 1 cut(s) 897
BmgT120I GGNCC 1 cut(s) 8
BmiI GGNNCC 1 cut(s) 308
BmrFI CCNGG 2 cut(s) 29, 228
BmsI GCATC 3 cut(s) 750, 792, 825
BoxI GACNNNNGTC 1 cut(s) 1014
BplI GAGNNNNNCTC 2 cut(s) 1117, 1149
BpmI CTGGAG 1 cut(s) 453
Bpu14I TTCGAA 1 cut(s) 716
BpuEI CTTGAG 1 cut(s) 827
Bsa29I ATCGAT 1 cut(s) 532
BsaHI GRCGYC 1 cut(s) 766
BsaI GGTCTC 1 cut(s) 1120
BsaJI CCNNGG 3 cut(s) 28, 297, 514
Bsc4I CCNNNNNNNGG 3 cut(s) 303, 379, 506
Bse1I ACTGG 2 cut(s) 85, 436
Bse3DI GCAATG 1 cut(s) 979
BseBI CCWGG 2 cut(s) 29, 228
BseCI ATCGAT 1 cut(s) 532
BseDI CCNNGG 3 cut(s) 28, 297, 514
BseGI GGATG 2 cut(s) 10, 307
BseLI CCNNNNNNNGG 3 cut(s) 303, 379, 506
BseMI GCAATG 1 cut(s) 979
BseMII CTCAG 3 cut(s) 789, 909, 1115
BseNI ACTGG 2 cut(s) 85, 436
BseRI GAGGAG 2 cut(s) 374, 450
BseXI GCAGC 4 cut(s) 601, 604, 793, 1002
BsgI GTGCAG 2 cut(s) 351, 608
Bsh1285I CGRYCG 1 cut(s) 949
BshFI GGCC 1 cut(s) 296
BshVI ATCGAT 1 cut(s) 532
BsiEI CGRYCG 1 cut(s) 949
BsiHKAI GWGCWC 1 cut(s) 1123
BsiHKCI CYCGRG 1 cut(s) 897
BslFI GGGAC 1 cut(s) 45
BslI CCNNNNNNNGG 3 cut(s) 303, 379, 506
BsmAI GTCTC 3 cut(s) 455, 1002, 1120
BsmFI GGGAC 1 cut(s) 45
BsmI GAATGC 1 cut(s) 111
BsnI GGCC 1 cut(s) 296
Bso31I GGTCTC 1 cut(s) 1120
BsoBI CYCGRG 1 cut(s) 897
Bsp119I TTCGAA 1 cut(s) 716
Bsp1286I GDGCHC 2 cut(s) 1005, 1123
Bsp1407I TGTACA 1 cut(s) 1095
Bsp143I GATC 7 cut(s) 306, 694, 775, 927, 946, 1100, 1141
BspACI CCGC 4 cut(s) 165, 763, 964, 994
BspANI GGCC 1 cut(s) 296
BspCNI CTCAG 3 cut(s) 790, 910, 1116
BspDI ATCGAT 1 cut(s) 532
BspLI GGNNCC 1 cut(s) 308
BspMAI CTGCAG 1 cut(s) 783
BspPI GGATC 4 cut(s) 301, 314, 922, 1136
BspT104I TTCGAA 1 cut(s) 716
BspTNI GGTCTC 1 cut(s) 1120
BsrDI GCAATG 1 cut(s) 979
BsrGI TGTACA 1 cut(s) 1095
BsrI ACTGG 2 cut(s) 85, 436
BssECI CCNNGG 3 cut(s) 28, 297, 514
BssMI GATC 7 cut(s) 306, 694, 775, 927, 946, 1100, 1141
BssNI GRCGYC 1 cut(s) 766
BssT1I CCWWGG 1 cut(s) 514
Bst2UI CCWGG 2 cut(s) 29, 228
Bst6I CTCTTC 2 cut(s) 351, 699
BstACI GRCGYC 1 cut(s) 766
BstAUI TGTACA 1 cut(s) 1095
BstBI TTCGAA 1 cut(s) 716
BstDEI CTNAG 5 cut(s) 67, 798, 918, 938, 1124
BstF5I GGATG 2 cut(s) 10, 307
BstKTI GATC 7 cut(s) 309, 697, 778, 930, 949, 1103, 1144
BstMAI GTCTC 3 cut(s) 455, 1002, 1120
BstMBI GATC 7 cut(s) 306, 694, 775, 927, 946, 1100, 1141
BstMCI CGRYCG 1 cut(s) 949
BstMWI GCNNNNNNNGC 7 cut(s) 117, 489, 601, 763, 902, 990, 1081
BstNI CCWGG 2 cut(s) 29, 228
BstNSI RCATGY 2 cut(s) 866, 1015
BstPAI GACNNNNGTC 1 cut(s) 1014
BstSCI CCNGG 2 cut(s) 27, 226
BstSFI CTRYAG 1 cut(s) 779
BstV1I GCAGC 4 cut(s) 601, 604, 793, 1002
BstX2I RGATCY 2 cut(s) 306, 927
BstYI RGATCY 2 cut(s) 306, 927
Bsu15I ATCGAT 1 cut(s) 532
BsuI GTATCC 1 cut(s) 960
BsuRI GGCC 1 cut(s) 296
BsuTUI ATCGAT 1 cut(s) 532
BtgZI GCGATG 1 cut(s) 498
BtsCI GGATG 2 cut(s) 10, 307
BtsIMutI CAGTG 2 cut(s) 78, 1121
Cfr13I GGNCC 1 cut(s) 8
ClaI ATCGAT 1 cut(s) 532
CseI GACGC 2 cut(s) 84, 755
Csp6I GTAC 1 cut(s) 1096
CviAII CATG 4 cut(s) 311, 832, 863, 1012
CviQI GTAC 1 cut(s) 1096
DdeI CTNAG 5 cut(s) 67, 798, 918, 938, 1124
DpnI GATC 7 cut(s) 308, 696, 777, 929, 948, 1102, 1143
DpnII GATC 7 cut(s) 306, 694, 775, 927, 946, 1100, 1141
EaeI YGGCCR 1 cut(s) 294
Eam1104I CTCTTC 2 cut(s) 351, 699
EarI CTCTTC 2 cut(s) 351, 699
Eco130I CCWWGG 1 cut(s) 514
Eco24I GRGCYC 1 cut(s) 1005
Eco31I GGTCTC 1 cut(s) 1120
Eco47I GGWCC 1 cut(s) 8
Eco57I CTGAAG 1 cut(s) 684
Eco88I CYCGRG 1 cut(s) 897
EcoRII CCWGG 2 cut(s) 27, 226
EcoT14I CCWWGG 1 cut(s) 514
EcoT22I ATGCAT 1 cut(s) 287
EcoT38I GRGCYC 1 cut(s) 1005
ErhI CCWWGG 1 cut(s) 514
FaeI CATG 4 cut(s) 314, 835, 866, 1015
FaqI GGGAC 1 cut(s) 45
FatI CATG 4 cut(s) 310, 831, 862, 1011
FbaI TGATCA 1 cut(s) 694
Fnu4HI GCNGC 6 cut(s) 590, 593, 764, 782, 991, 994
FokI GGATG 2 cut(s) 17, 314
FriOI GRGCYC 1 cut(s) 1005
Fsp4HI GCNGC 6 cut(s) 590, 593, 764, 782, 991, 994
FspBI CTAG 1 cut(s) 150
GluI GCNGC 6 cut(s) 590, 593, 764, 782, 991, 994
GsuI CTGGAG 1 cut(s) 453
HaeIII GGCC 1 cut(s) 296
HgaI GACGC 2 cut(s) 84, 755
Hin1I GRCGYC 1 cut(s) 766
Hin1II CATG 4 cut(s) 314, 835, 866, 1015
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 2 cut(s) 362, 510
Hpy166II GTNNAC 2 cut(s) 25, 610
Hpy188I TCNGA 3 cut(s) 256, 919, 1007
Hpy188III TCNNGA 1 cut(s) 692
Hpy8I GTNNAC 2 cut(s) 25, 610
HpyAV CCTTC 5 cut(s) 21, 139, 499, 712, 1036
HpyCH4V TGCA 7 cut(s) 98, 285, 368, 589, 781, 826, 889
HpyF10VI GCNNNNNNNGC 7 cut(s) 117, 489, 601, 763, 902, 990, 1081
HpyF3I CTNAG 5 cut(s) 67, 798, 918, 938, 1124
Hsp92I GRCGYC 1 cut(s) 766
Hsp92II CATG 4 cut(s) 314, 835, 866, 1015
Ksp22I TGATCA 1 cut(s) 694
Kzo9I GATC 7 cut(s) 306, 694, 775, 927, 946, 1100, 1141
LmnI GCTCC 1 cut(s) 1034
LpnPI CCDG 9 cut(s) 14, 41, 66, 87, 213, 240, 417, 1106, 1143
Lsp1109I GCAGC 4 cut(s) 601, 604, 793, 1002
LweI GCATC 3 cut(s) 750, 792, 825
MaeI CTAG 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 157
MalI GATC 7 cut(s) 308, 696, 777, 929, 948, 1102, 1143
MboI GATC 7 cut(s) 306, 694, 775, 927, 946, 1100, 1141
MboII GAAGA 6 cut(s) 368, 461, 482, 682, 716, 1081
MflI RGATCY 2 cut(s) 306, 927
MhlI GDGCHC 2 cut(s) 1005, 1123
MlyI GAGTC 1 cut(s) 371
MmeI TCCRAC 3 cut(s) 52, 426, 955
MnlI CCTC 8 cut(s) 292, 352, 428, 567, 700, 895, 980, 1055
Mph1103I ATGCAT 1 cut(s) 287
MseI TTAA 7 cut(s) 18, 176, 210, 288, 786, 812, 1022
MslI CAYNNNNRTG 1 cut(s) 630
MspR9I CCNGG 2 cut(s) 29, 228
Mva1269I GAATGC 1 cut(s) 111
MvaI CCWGG 2 cut(s) 29, 228
MwoI GCNNNNNNNGC 7 cut(s) 117, 489, 601, 763, 902, 990, 1081
NdeII GATC 7 cut(s) 306, 694, 775, 927, 946, 1100, 1141
NlaIII CATG 4 cut(s) 314, 835, 866, 1015
NlaIV GGNNCC 1 cut(s) 308
NmeAIII GCCGAG 1 cut(s) 322
NmuCI GTSAC 1 cut(s) 157
NsiI ATGCAT 1 cut(s) 287
NspI RCATGY 2 cut(s) 866, 1015
NspV TTCGAA 1 cut(s) 716
PciI ACATGT 1 cut(s) 1011
PctI GAATGC 1 cut(s) 111
PfeI GAWTC 1 cut(s) 510
PkrI GCNGC 6 cut(s) 591, 594, 765, 783, 992, 995
Ple19I CGATCG 1 cut(s) 949
PleI GAGTC 1 cut(s) 370
PpsI GAGTC 1 cut(s) 370
PscI ACATGT 1 cut(s) 1011
PshAI GACNNNNGTC 1 cut(s) 1014
PshBI ATTAAT 2 cut(s) 18, 210
Psp6I CCWGG 2 cut(s) 27, 226
PspGI CCWGG 2 cut(s) 27, 226
PspN4I GGNNCC 1 cut(s) 308
PspPI GGNCC 1 cut(s) 8
PsrI GAACNNNNNNTAC 2 cut(s) 331, 363
PstI CTGCAG 1 cut(s) 783
PsuI RGATCY 2 cut(s) 306, 927
PvuI CGATCG 1 cut(s) 949
RsaI GTAC 1 cut(s) 1097
RsaNI GTAC 1 cut(s) 1096
RseI CAYNNNNRTG 1 cut(s) 630
SaqAI TTAA 7 cut(s) 18, 176, 210, 288, 786, 812, 1022
SatI GCNGC 6 cut(s) 590, 593, 764, 782, 991, 994
Sau3AI GATC 7 cut(s) 306, 694, 775, 927, 946, 1100, 1141
Sau96I GGNCC 1 cut(s) 8
SchI GAGTC 1 cut(s) 371
ScrFI CCNGG 2 cut(s) 29, 228
SduI GDGCHC 2 cut(s) 1005, 1123
SetI ASST 9 cut(s) 13, 149, 380, 388, 597, 711, 786, 917, 1135
SfaNI GCATC 3 cut(s) 750, 792, 825
SfcI CTRYAG 1 cut(s) 779
SfuI TTCGAA 1 cut(s) 716
SinI GGWCC 1 cut(s) 8
SmiMI CAYNNNNRTG 1 cut(s) 630
SmlI CTYRAG 1 cut(s) 806
SmoI CTYRAG 1 cut(s) 806
SsiI CCGC 4 cut(s) 165, 763, 964, 994
SspMI CTAG 1 cut(s) 150
StyD4I CCNGG 2 cut(s) 27, 226
StyI CCWWGG 1 cut(s) 514
TaqI TCGA 6 cut(s) 14, 532, 579, 716, 949, 1113
TatI WGTACW 1 cut(s) 1095
TauI GCSGC 2 cut(s) 766, 996
TfiI GAWTC 1 cut(s) 510
Tru1I TTAA 7 cut(s) 18, 176, 210, 288, 786, 812, 1022
Tru9I TTAA 7 cut(s) 18, 176, 210, 288, 786, 812, 1022
TscAI CASTG 2 cut(s) 85, 1128
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 4 cut(s) 589, 592, 781, 990
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 4 cut(s) 121, 698, 873, 990
TspGWI ACGGA 2 cut(s) 362, 575
TspRI CASTG 2 cut(s) 85, 1128
VpaK11BI GGWCC 1 cut(s) 8
VspI ATTAAT 2 cut(s) 18, 210
XapI RAATTY 1 cut(s) 402
XceI RCATGY 2 cut(s) 866, 1015
XspI CTAG 1 cut(s) 150
Zsp2I ATGCAT 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.