Rorug07G0257400
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000615
Physical Location & Seq
Reverse (-)
24125921 .. 24130556
4636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0257400.1

Sequence Viewer

Length: 216 bp
ATGATCGAGAACCCATCAGAGCTCTCGACCTTCTCGACGACCCGAAGCCACGACCCGGCCGGTTCTCCACCATCCACCGACGAGACGACGGTGGACCACCGGCATTCTCCTAGTCTCGTCATCACCGACGTGCATATGGTGATGGATCATCCATGCACGGATCGTGAAGGGAGATTCGAAGCTCGGAAGGTACGAAGCTCTTCAGGCAATTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

71

Amino Acids

7.88

Weight (kDa)

5.6

Isoelectric Point (pI)

61.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000615)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33970 AT1G33970 AT1G33970 AT1G33970 AT1G33970
fragaria_vesca FvH4_5g32530 FvH4_5g32530
malus_domestica MD15G1403700.v1.1
prunus_persica Prupe.1G549700_v2.0.a1 Prupe.1G549700_v2.0.a1
pyrus_communis pycom15g36100
rosa_chinensis RchiOBHm_Chr7g0226331 RchiOBHm_Chr7g0229101 RchiOBHm_Chr7g0229111 RchiOBHm_Chr7g0229141 RchiOBHm_Chr7g0229161 RchiOBHm_Chr7g0229171 RchiOBHm_Chr7g0229211 RchiOBHm_Chr7g0229241 RchiOBHm_Chr7g0229381 RchiOBHm_Chr7g0229761 RchiOBHm_Chr7g0229911
rosa_laevigata RLG00000000796 RLG00000001464 RLG00000001466 RLG00000001469 RLG00000001523 RLG00000001526 RLG00000001529 RLG00000001530 RLG00000001749 RLG00000001913 RLG00000002114 RLG00000002115 RLG00000023248 RLG00000023250
rosa_multiflora Rmu_co8281135.1_g000001 Rmu_sc0000271.1_g000002 Rmu_sc0000271.1_g000007 Rmu_sc0000271.1_g000014 Rmu_sc0000693.1_g000012 Rmu_sc0000693.1_g000015 Rmu_sc0000693.1_g000023 Rmu_sc0001044.1_g000005 Rmu_sc0006689.1_g000007 Rmu_sc0012733.1_g000005
rosa_roxburghii Rroxscaffold_3G00230540 Rroxscaffold_3G00230590 Rroxscaffold_3G00230600 Rroxscaffold_3G00230700 Rroxscaffold_3G00230710 Rroxscaffold_3G00232980 Rroxscaffold_3G00237610
rosa_rugosa Rorug07G0203800 Rorug07G0203900 Rorug07G0256100 Rorug07G0256400 Rorug07G0256400 Rorug07G0256400 Rorug07G0256500 Rorug07G0256600 Rorug07G0256600 Rorug07G0257100 Rorug07G0257200 Rorug07G0257300 Rorug07G0257400
rosa_samantha Rh7DG401100 Rh7DG401300 Rh7DG401900 Rh7DG402100 Rh7DG402300 Rh7DG402700
rosa_wichuraiana Rw0G001910 Rw0G001930 Rw0G001940 Rw7G033790 Rw7G033810 Rw7G033840 Rw7G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 153, 168
AcoI YGGCCR 1 cut(s) 57
AcuI CTGAAG 1 cut(s) 186
AfaI GTAC 1 cut(s) 192
AfiI CCNNNNNNNGG 1 cut(s) 55
AjiI CACGTC 1 cut(s) 130
AleI CACNNNNGTG 1 cut(s) 128
AluBI AGCT 3 cut(s) 22, 182, 198
AluI AGCT 3 cut(s) 22, 182, 198
Alw21I GWGCWC 1 cut(s) 24
Alw26I GTCTC 2 cut(s) 77, 119
AlwI GGATC 2 cut(s) 153, 168
AoxI GGCC 1 cut(s) 57
Asp700I GAANNNNTTC 1 cut(s) 199
AspS9I GGNCC 1 cut(s) 94
AsuC2I CCSGG 1 cut(s) 56
AsuHPI GGTGA 2 cut(s) 115, 151
AsuII TTCGAA 1 cut(s) 177
AvaII GGWCC 1 cut(s) 94
BanII GRGCYC 1 cut(s) 24
Bbv12I GWGCWC 1 cut(s) 24
BccI CCATC 3 cut(s) 22, 79, 136
BcnI CCSGG 1 cut(s) 56
BcoDI GTCTC 2 cut(s) 77, 119
BfaI CTAG 1 cut(s) 111
Bme1390I CCNGG 1 cut(s) 56
Bme18I GGWCC 1 cut(s) 94
BmgBI CACGTC 1 cut(s) 130
BmgT120I GGNCC 1 cut(s) 94
BmrFI CCNGG 1 cut(s) 56
Bpu14I TTCGAA 1 cut(s) 177
BpuMI CCSGG 1 cut(s) 56
Bsc4I CCNNNNNNNGG 1 cut(s) 55
Bse118I RCCGGY 2 cut(s) 59, 99
BseGI GGATG 2 cut(s) 71, 148
BseLI CCNNNNNNNGG 1 cut(s) 55
BseX3I CGGCCG 1 cut(s) 57
Bsh1285I CGRYCG 1 cut(s) 60
BshFI GGCC 1 cut(s) 59
BsiEI CGRYCG 1 cut(s) 60
BsiHKAI GWGCWC 1 cut(s) 24
BsiSI CCGG 3 cut(s) 56, 60, 100
BslI CCNNNNNNNGG 1 cut(s) 55
BsmAI GTCTC 2 cut(s) 77, 119
BsmBI CGTCTC 1 cut(s) 77
BsmI GAATGC 1 cut(s) 103
BsnI GGCC 1 cut(s) 59
Bsp119I TTCGAA 1 cut(s) 177
Bsp1286I GDGCHC 1 cut(s) 24
Bsp143I GATC 3 cut(s) 3, 145, 160
BspANI GGCC 1 cut(s) 59
BspPI GGATC 2 cut(s) 153, 168
BspQI GCTCTTC 1 cut(s) 205
BspT104I TTCGAA 1 cut(s) 177
BsrFI RCCGGY 2 cut(s) 59, 99
BssAI RCCGGY 2 cut(s) 59, 99
BssMI GATC 3 cut(s) 3, 145, 160
Bst4CI ACNGT 1 cut(s) 91
Bst6I CTCTTC 1 cut(s) 205
BstBI TTCGAA 1 cut(s) 177
BstF5I GGATG 2 cut(s) 71, 148
BstKTI GATC 3 cut(s) 6, 148, 163
BstMAI GTCTC 2 cut(s) 77, 119
BstMBI GATC 3 cut(s) 3, 145, 160
BstMCI CGRYCG 1 cut(s) 60
BstMWI GCNNNNNNNGC 1 cut(s) 204
BstSCI CCNGG 1 cut(s) 54
BstZI CGGCCG 1 cut(s) 57
BsuRI GGCC 1 cut(s) 59
BtrI CACGTC 1 cut(s) 130
BtsCI GGATG 2 cut(s) 71, 148
Cfr10I RCCGGY 2 cut(s) 59, 99
Cfr13I GGNCC 1 cut(s) 94
Csp6I GTAC 1 cut(s) 191
CviAII CATG 1 cut(s) 153
CviJI RGCY 5 cut(s) 22, 48, 59, 182, 198
CviKI_1 RGCY 5 cut(s) 22, 48, 59, 182, 198
CviQI GTAC 1 cut(s) 191
DpnI GATC 3 cut(s) 5, 147, 162
DpnII GATC 3 cut(s) 3, 145, 160
EaeI YGGCCR 1 cut(s) 57
EagI CGGCCG 1 cut(s) 57
Eam1104I CTCTTC 1 cut(s) 205
EarI CTCTTC 1 cut(s) 205
Ecl136II GAGCTC 1 cut(s) 22
EclXI CGGCCG 1 cut(s) 57
Eco24I GRGCYC 1 cut(s) 24
Eco47I GGWCC 1 cut(s) 94
Eco52I CGGCCG 1 cut(s) 57
Eco53kI GAGCTC 1 cut(s) 22
Eco57I CTGAAG 1 cut(s) 186
EcoICRI GAGCTC 1 cut(s) 22
EcoT38I GRGCYC 1 cut(s) 24
Esp3I CGTCTC 1 cut(s) 77
FaeI CATG 1 cut(s) 156
FaiI YATR 3 cut(s) 135, 137, 154
FatI CATG 1 cut(s) 152
FauNDI CATATG 1 cut(s) 135
FokI GGATG 2 cut(s) 58, 135
FriOI GRGCYC 1 cut(s) 24
FspBI CTAG 1 cut(s) 111
HaeIII GGCC 1 cut(s) 59
HapII CCGG 3 cut(s) 56, 60, 100
Hin1II CATG 1 cut(s) 156
HinfI GANTC 1 cut(s) 174
HpaII CCGG 3 cut(s) 56, 60, 100
HphI GGTGA 2 cut(s) 115, 151
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 3 cut(s) 19, 186, 215
Hpy188III TCNNGA 4 cut(s) 7, 25, 34, 164
Hpy8I GTNNAC 1 cut(s) 94
Hpy99I CGWCG 4 cut(s) 40, 83, 91, 131
HpyAV CCTTC 3 cut(s) 40, 161, 181
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 2 cut(s) 133, 156
HpyF10VI GCNNNNNNNGC 1 cut(s) 204
HpySE526I ACGT 1 cut(s) 129
Hsp92II CATG 1 cut(s) 156
Kzo9I GATC 3 cut(s) 3, 145, 160
LguI GCTCTTC 1 cut(s) 205
LpnPI CCDG 4 cut(s) 69, 73, 113, 189
MaeI CTAG 1 cut(s) 111
MaeII ACGT 1 cut(s) 129
MalI GATC 3 cut(s) 5, 147, 162
MboI GATC 3 cut(s) 3, 145, 160
MboII GAAGA 1 cut(s) 192
MhlI GDGCHC 1 cut(s) 24
MluCI AATT 1 cut(s) 208
MroXI GAANNNNTTC 1 cut(s) 199
MslI CAYNNNNRTG 1 cut(s) 128
MspI CCGG 3 cut(s) 56, 60, 100
MspR9I CCNGG 1 cut(s) 56
Mva1269I GAATGC 1 cut(s) 103
MwoI GCNNNNNNNGC 1 cut(s) 204
NciI CCSGG 1 cut(s) 56
NdeI CATATG 1 cut(s) 135
NdeII GATC 3 cut(s) 3, 145, 160
NlaIII CATG 1 cut(s) 156
NspV TTCGAA 1 cut(s) 177
OliI CACNNNNGTG 1 cut(s) 128
PciSI GCTCTTC 1 cut(s) 205
PcsI WCGNNNNNNNCGW 3 cut(s) 32, 123, 190
PctI GAATGC 1 cut(s) 103
PdmI GAANNNNTTC 1 cut(s) 199
PfeI GAWTC 1 cut(s) 174
Psp124BI GAGCTC 1 cut(s) 24
PspPI GGNCC 1 cut(s) 94
RsaI GTAC 1 cut(s) 192
RsaNI GTAC 1 cut(s) 191
RseI CAYNNNNRTG 1 cut(s) 128
SacI GAGCTC 1 cut(s) 24
SapI GCTCTTC 1 cut(s) 205
Sau3AI GATC 3 cut(s) 3, 145, 160
Sau96I GGNCC 1 cut(s) 94
ScrFI CCNGG 1 cut(s) 56
SduI GDGCHC 1 cut(s) 24
SetI ASST 6 cut(s) 24, 32, 132, 184, 192, 200
SfuI TTCGAA 1 cut(s) 177
SinI GGWCC 1 cut(s) 94
SmiMI CAYNNNNRTG 1 cut(s) 128
Sse9I AATT 1 cut(s) 208
SspMI CTAG 1 cut(s) 111
SstI GAGCTC 1 cut(s) 24
StyD4I CCNGG 1 cut(s) 54
TaaI ACNGT 1 cut(s) 91
TaiI ACGT 1 cut(s) 132
TaqI TCGA 4 cut(s) 6, 26, 35, 177
TasI AATT 1 cut(s) 208
TfiI GAWTC 1 cut(s) 174
TspGWI ACGGA 1 cut(s) 173
VpaK11BI GGWCC 1 cut(s) 94
XmnI GAANNNNTTC 1 cut(s) 199
XspI CTAG 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.