Rw7G033900
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000615
Physical Location & Seq
Reverse (-)
50036710 .. 50039342
2633 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G033900.1

Sequence Viewer

Length: 1008 bp
ATGTTGACCAGGAACTTCCCTTTTCTATGCTGCCGCACTGTGGTCTTAGTTGGACGCACTGGTAATGGAAAAAGTGCAACAGGCAACAGCATTCTTGGCAAAAACGCCTTCAAGGCCAAGCGTAGCTCTAGTAGGGTCACGACCACTACTGAATTGAAGACTGCTATCTTGAGAGATGGACAACAAATTAATGTTATAGACACTCCCGGTCTTTTTGATAATTCTGCCAAATCAGACTTCATTGGCAAAGAAATTGTCCAAAGCATTAAATTGGCCAAGGATGGAATCCATGCTGTTCTTGTGGTTCTCTCAACTAAAACTCGCTTATCTGAAGAAGAGGAGTCTGCAATCCGTAGCTTGGAAACTCTATTTGGAAGTAAAATCTTTGACTATATGATTGTTGTCTTTACGGGAGGAGATGAGTTGGAAGAAAATGATCAGACTTTGGAAGATTATTTGGGCCGTGATTGCCCGGAGCCCTTGAAGGAAATCCTTGGTCTGTGTGGAAATCGTTGTGTGCTTTTTGATAACAAGACTAAGGATGAAAGCAAGAGGGTCGAACAAGTGCAGCAGCTTCTCTCGCTTGTAAACTCAGTTATAGCGCAGAATGGTGGGCGCCCATACACGGATGAGATATTTGCTGAAGTTAAGAAAGGGGCTATGGAACTTAGTGATAAACAAGAAGGGGTTGCTTCTTTGAAGGGGTATTCAAAACAAGAAATATCTCATTTGAATGAGCAGATACAGCTTGCACAGGATCAGCAGCTTAAACAAATTACTGAGATGCTTGAGTTAAAGATGAGAGTGAATGCTATGACACTTGAACAAAAGTTAGCAGATGAACATGCTGCACGACTAAGAGCAGAACTGCAGATCGCCCAAGAGGCTCAACAAAGGTCTGAGAATGAGATCCGAGGGCTTAGATACGATCCACAAGCAGAGAAGCGGATACGCGACAGAAACGGCAGAGGCCGCATAGGCCTCAGAGACATATGTCCTATTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

335

Amino Acids

37.5

Weight (kDa)

6.41

Isoelectric Point (pI)

43.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIG1 PF04548 12 - 226 5.9e-80 AIG1 family
MMR_HSR1 PF01926 13 - 120 2.1e-11 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000615)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33970 AT1G33970 AT1G33970 AT1G33970 AT1G33970
fragaria_vesca FvH4_5g32530 FvH4_5g32530
malus_domestica MD15G1403700.v1.1
prunus_persica Prupe.1G549700_v2.0.a1 Prupe.1G549700_v2.0.a1
pyrus_communis pycom15g36100
rosa_chinensis RchiOBHm_Chr7g0226331 RchiOBHm_Chr7g0229101 RchiOBHm_Chr7g0229111 RchiOBHm_Chr7g0229141 RchiOBHm_Chr7g0229161 RchiOBHm_Chr7g0229171 RchiOBHm_Chr7g0229211 RchiOBHm_Chr7g0229241 RchiOBHm_Chr7g0229381 RchiOBHm_Chr7g0229761 RchiOBHm_Chr7g0229911
rosa_laevigata RLG00000000796 RLG00000001464 RLG00000001466 RLG00000001469 RLG00000001523 RLG00000001526 RLG00000001529 RLG00000001530 RLG00000001749 RLG00000001913 RLG00000002114 RLG00000002115 RLG00000023248 RLG00000023250
rosa_multiflora Rmu_co8281135.1_g000001 Rmu_sc0000271.1_g000002 Rmu_sc0000271.1_g000007 Rmu_sc0000271.1_g000014 Rmu_sc0000693.1_g000012 Rmu_sc0000693.1_g000015 Rmu_sc0000693.1_g000023 Rmu_sc0001044.1_g000005 Rmu_sc0006689.1_g000007 Rmu_sc0012733.1_g000005
rosa_roxburghii Rroxscaffold_3G00230540 Rroxscaffold_3G00230590 Rroxscaffold_3G00230600 Rroxscaffold_3G00230700 Rroxscaffold_3G00230710 Rroxscaffold_3G00232980 Rroxscaffold_3G00237610
rosa_rugosa Rorug07G0203800 Rorug07G0203900 Rorug07G0256100 Rorug07G0256400 Rorug07G0256400 Rorug07G0256400 Rorug07G0256500 Rorug07G0256600 Rorug07G0256600 Rorug07G0257100 Rorug07G0257200 Rorug07G0257300 Rorug07G0257400
rosa_samantha Rh7DG401100 Rh7DG401300 Rh7DG401900 Rh7DG402100 Rh7DG402300 Rh7DG402700
rosa_wichuraiana Rw0G001910 Rw0G001930 Rw0G001940 Rw7G033790 Rw7G033810 Rw7G033840 Rw7G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 615
AccII CGCG 1 cut(s) 954
AciI CCGC 3 cut(s) 34, 946, 973
AclWI GGATC 3 cut(s) 765, 904, 923
AcoI YGGCCR 1 cut(s) 273
AcuI CTGAAG 2 cut(s) 351, 663
AcyI GRCGYC 1 cut(s) 616
AfiI CCNNNNNNNGG 3 cut(s) 40, 358, 625
AgsI TTSAA 7 cut(s) 112, 157, 484, 700, 711, 733, 824
AjnI CCWGG 1 cut(s) 8
AjuI GAANNNNNNNTTGG 4 cut(s) 221, 253, 354, 386
AluBI AGCT 5 cut(s) 126, 357, 574, 748, 766
AluI AGCT 5 cut(s) 126, 357, 574, 748, 766
Alw26I GTCTC 1 cut(s) 981
AlwI GGATC 3 cut(s) 765, 904, 923
AoxI GGCC 5 cut(s) 114, 273, 460, 970, 979
ApeKI GCWGC 5 cut(s) 30, 568, 571, 763, 848
ArsI GACNNNNNNTTYG 2 cut(s) 240, 272
AseI ATTAAT 1 cut(s) 189
AspLEI GCGC 2 cut(s) 604, 618
AspS9I GGNCC 1 cut(s) 460
AsuC2I CCSGG 2 cut(s) 207, 473
BalI TGGCCA 1 cut(s) 275
BanI GGYRCC 1 cut(s) 615
BanII GRGCYC 1 cut(s) 480
BbsI GAAGAC 1 cut(s) 164
BbvI GCAGC 5 cut(s) 17, 580, 583, 775, 835
BccI CCATC 2 cut(s) 170, 275
BceAI ACGGC 2 cut(s) 447, 979
BcgI CGANNNNNNTGC 2 cut(s) 538, 572
BciT130I CCWGG 1 cut(s) 10
BciVI GTATCC 1 cut(s) 942
BclI TGATCA 1 cut(s) 436
BcnI CCSGG 2 cut(s) 207, 473
BcoDI GTCTC 1 cut(s) 981
BfaI CTAG 1 cut(s) 129
BfmI CTRYAG 1 cut(s) 869
BfoI RGCGCY 1 cut(s) 619
BfuI GTATCC 1 cut(s) 942
BglI GCCNNNNNGGC 3 cut(s) 113, 884, 978
BisI GCNGC 7 cut(s) 31, 34, 569, 572, 764, 849, 973
BlsI GCNGC 7 cut(s) 32, 35, 570, 573, 765, 850, 974
Bme1390I CCNGG 3 cut(s) 10, 207, 473
BmgT120I GGNCC 1 cut(s) 460
BmiI GGNNCC 2 cut(s) 477, 617
BmrFI CCNGG 3 cut(s) 10, 207, 473
BmsI GCATC 1 cut(s) 774
BoxI GACNNNNGTC 1 cut(s) 993
BpiI GAAGAC 1 cut(s) 164
BpuEI CTTGAG 2 cut(s) 190, 809
BpuMI CCSGG 2 cut(s) 207, 473
BsaHI GRCGYC 1 cut(s) 616
BsaJI CCNNGG 3 cut(s) 276, 493, 913
Bsc4I CCNNNNNNNGG 3 cut(s) 40, 358, 625
Bse1I ACTGG 1 cut(s) 64
BseBI CCWGG 1 cut(s) 10
BseDI CCNNGG 3 cut(s) 276, 493, 913
BseGI GGATG 3 cut(s) 286, 547, 634
BseLI CCNNNNNNNGG 3 cut(s) 40, 358, 625
BseMII CTCAG 4 cut(s) 606, 771, 891, 997
BseNI ACTGG 1 cut(s) 64
BseRI GAGGAG 2 cut(s) 353, 429
BseXI GCAGC 5 cut(s) 17, 580, 583, 775, 835
BsgI GTGCAG 2 cut(s) 587, 834
Bsh1236I CGCG 1 cut(s) 954
BshFI GGCC 5 cut(s) 116, 275, 462, 972, 981
BshNI GGYRCC 1 cut(s) 615
BsiSI CCGG 2 cut(s) 207, 473
BslI CCNNNNNNNGG 3 cut(s) 40, 358, 625
BsmAI GTCTC 1 cut(s) 981
BsmI GAATGC 2 cut(s) 90, 814
BsnI GGCC 5 cut(s) 116, 275, 462, 972, 981
Bsp1286I GDGCHC 1 cut(s) 480
Bsp143I GATC 5 cut(s) 436, 757, 873, 909, 928
BspACI CCGC 3 cut(s) 34, 946, 973
BspANI GGCC 5 cut(s) 116, 275, 462, 972, 981
BspCNI CTCAG 4 cut(s) 605, 772, 892, 996
BspFNI CGCG 1 cut(s) 954
BspLI GGNNCC 2 cut(s) 477, 617
BspMAI CTGCAG 1 cut(s) 873
BspPI GGATC 3 cut(s) 765, 904, 923
BspT107I GGYRCC 1 cut(s) 615
BsrI ACTGG 1 cut(s) 64
BssECI CCNNGG 3 cut(s) 276, 493, 913
BssMI GATC 5 cut(s) 436, 757, 873, 909, 928
BssNI GRCGYC 1 cut(s) 616
BssT1I CCWWGG 2 cut(s) 276, 493
Bst2UI CCWGG 1 cut(s) 10
Bst4CI ACNGT 1 cut(s) 40
Bst6I CTCTTC 1 cut(s) 330
BstACI GRCGYC 1 cut(s) 616
BstC8I GCNNGC 1 cut(s) 750
BstDEI CTNAG 9 cut(s) 46, 537, 592, 668, 780, 857, 900, 920, 983
BstF5I GGATG 3 cut(s) 286, 547, 634
BstFNI CGCG 1 cut(s) 954
BstH2I RGCGCY 1 cut(s) 619
BstHHI GCGC 2 cut(s) 604, 618
BstKTI GATC 5 cut(s) 439, 760, 876, 912, 931
BstMAI GTCTC 1 cut(s) 981
BstMBI GATC 5 cut(s) 436, 757, 873, 909, 928
BstMWI GCNNNNNNNGC 8 cut(s) 96, 113, 468, 580, 745, 884, 972, 978
BstNI CCWGG 1 cut(s) 10
BstNSI RCATGY 1 cut(s) 848
BstPAI GACNNNNGTC 1 cut(s) 993
BstSCI CCNGG 3 cut(s) 8, 205, 471
BstSFI CTRYAG 1 cut(s) 869
BstUI CGCG 1 cut(s) 954
BstV1I GCAGC 5 cut(s) 17, 580, 583, 775, 835
BstV2I GAAGAC 1 cut(s) 164
BstX2I RGATCY 1 cut(s) 909
BstYI RGATCY 1 cut(s) 909
BsuI GTATCC 1 cut(s) 942
BsuRI GGCC 5 cut(s) 116, 275, 462, 972, 981
BtsCI GGATG 3 cut(s) 286, 547, 634
BtsIMutI CAGTG 2 cut(s) 36, 57
Cac8I GCNNGC 1 cut(s) 750
CfoI GCGC 2 cut(s) 604, 618
Cfr13I GGNCC 1 cut(s) 460
CseI GACGC 1 cut(s) 63
CviAII CATG 2 cut(s) 290, 845
DdeI CTNAG 9 cut(s) 46, 537, 592, 668, 780, 857, 900, 920, 983
DinI GGCGCC 1 cut(s) 617
DpnI GATC 5 cut(s) 438, 759, 875, 911, 930
DpnII GATC 5 cut(s) 436, 757, 873, 909, 928
EaeI YGGCCR 1 cut(s) 273
Eam1104I CTCTTC 1 cut(s) 330
EarI CTCTTC 1 cut(s) 330
Eco130I CCWWGG 2 cut(s) 276, 493
Eco147I AGGCCT 1 cut(s) 981
Eco24I GRGCYC 1 cut(s) 480
Eco57I CTGAAG 2 cut(s) 351, 663
EcoRII CCWGG 1 cut(s) 8
EcoT14I CCWWGG 2 cut(s) 276, 493
EcoT38I GRGCYC 1 cut(s) 480
EgeI GGCGCC 1 cut(s) 617
EheI GGCGCC 1 cut(s) 617
ErhI CCWWGG 2 cut(s) 276, 493
FaeI CATG 2 cut(s) 293, 848
FatI CATG 2 cut(s) 289, 844
FauNDI CATATG 1 cut(s) 992
FbaI TGATCA 1 cut(s) 436
Fnu4HI GCNGC 7 cut(s) 31, 34, 569, 572, 764, 849, 973
FokI GGATG 3 cut(s) 293, 554, 641
FriOI GRGCYC 1 cut(s) 480
Fsp4HI GCNGC 7 cut(s) 31, 34, 569, 572, 764, 849, 973
FspBI CTAG 1 cut(s) 129
GlaI GCGC 2 cut(s) 603, 617
GluI GCNGC 7 cut(s) 31, 34, 569, 572, 764, 849, 973
HaeII RGCGCY 1 cut(s) 619
HaeIII GGCC 5 cut(s) 116, 275, 462, 972, 981
HapII CCGG 2 cut(s) 207, 473
HgaI GACGC 1 cut(s) 63
HhaI GCGC 2 cut(s) 604, 618
Hin1I GRCGYC 1 cut(s) 616
Hin1II CATG 2 cut(s) 293, 848
Hin6I GCGC 2 cut(s) 602, 616
HinP1I GCGC 2 cut(s) 602, 616
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 2 cut(s) 285, 341
HpaII CCGG 2 cut(s) 207, 473
Hpy166II GTNNAC 2 cut(s) 6, 589
Hpy188I TCNGA 6 cut(s) 235, 331, 441, 901, 914, 986
Hpy188III TCNNGA 2 cut(s) 139, 169
Hpy8I GTNNAC 2 cut(s) 6, 589
HpyAV CCTTC 4 cut(s) 118, 478, 677, 694
HpyCH4III ACNGT 1 cut(s) 40
HpyCH4V TGCA 6 cut(s) 77, 347, 568, 752, 851, 871
HpyF10VI GCNNNNNNNGC 8 cut(s) 96, 113, 468, 580, 745, 884, 972, 978
HpyF3I CTNAG 9 cut(s) 46, 537, 592, 668, 780, 857, 900, 920, 983
Hsp92I GRCGYC 1 cut(s) 616
Hsp92II CATG 2 cut(s) 293, 848
HspAI GCGC 2 cut(s) 602, 616
KasI GGCGCC 1 cut(s) 615
Ksp22I TGATCA 1 cut(s) 436
Kzo9I GATC 5 cut(s) 436, 757, 873, 909, 928
LmnI GCTCC 1 cut(s) 475
LpnPI CCDG 6 cut(s) 22, 45, 66, 220, 486, 740
Lsp1109I GCAGC 5 cut(s) 17, 580, 583, 775, 835
LweI GCATC 1 cut(s) 774
MaeI CTAG 1 cut(s) 129
MaeIII GTNAC 1 cut(s) 136
MalI GATC 5 cut(s) 438, 759, 875, 911, 930
MboI GATC 5 cut(s) 436, 757, 873, 909, 928
MboII GAAGA 5 cut(s) 169, 344, 347, 440, 461
MflI RGATCY 1 cut(s) 909
MhlI GDGCHC 1 cut(s) 480
MlsI TGGCCA 1 cut(s) 275
MluCI AATT 6 cut(s) 152, 186, 220, 252, 269, 774
MluNI TGGCCA 1 cut(s) 275
Mly113I GGCGCC 1 cut(s) 616
MlyI GAGTC 1 cut(s) 350
MmeI TCCRAC 2 cut(s) 31, 405
MnlI CCTC 7 cut(s) 331, 407, 546, 877, 908, 962, 992
Mox20I TGGCCA 1 cut(s) 275
MscI TGGCCA 1 cut(s) 275
MseI TTAA 6 cut(s) 189, 267, 648, 768, 794, 1006
MslI CAYNNNNRTG 1 cut(s) 732
Msp20I TGGCCA 1 cut(s) 275
MspI CCGG 2 cut(s) 207, 473
MspR9I CCNGG 3 cut(s) 10, 207, 473
Mva1269I GAATGC 2 cut(s) 90, 814
MvaI CCWGG 1 cut(s) 10
MvnI CGCG 1 cut(s) 954
MwoI GCNNNNNNNGC 8 cut(s) 96, 113, 468, 580, 745, 884, 972, 978
NarI GGCGCC 1 cut(s) 616
NciI CCSGG 2 cut(s) 207, 473
NdeI CATATG 1 cut(s) 992
NdeII GATC 5 cut(s) 436, 757, 873, 909, 928
NlaIII CATG 2 cut(s) 293, 848
NlaIV GGNNCC 2 cut(s) 477, 617
NmuCI GTSAC 1 cut(s) 136
NspI RCATGY 1 cut(s) 848
PceI AGGCCT 1 cut(s) 981
PctI GAATGC 2 cut(s) 90, 814
PfeI GAWTC 1 cut(s) 285
PkrI GCNGC 7 cut(s) 32, 35, 570, 573, 765, 850, 974
PleI GAGTC 1 cut(s) 349
PluTI GGCGCC 1 cut(s) 619
PpsI GAGTC 1 cut(s) 349
PshAI GACNNNNGTC 1 cut(s) 993
PshBI ATTAAT 1 cut(s) 189
Psp6I CCWGG 1 cut(s) 8
PspGI CCWGG 1 cut(s) 8
PspN4I GGNNCC 2 cut(s) 477, 617
PspPI GGNCC 1 cut(s) 460
PstI CTGCAG 1 cut(s) 873
PsuI RGATCY 1 cut(s) 909
RseI CAYNNNNRTG 1 cut(s) 732
SaqAI TTAA 6 cut(s) 189, 267, 648, 768, 794, 1006
SatI GCNGC 7 cut(s) 31, 34, 569, 572, 764, 849, 973
Sau3AI GATC 5 cut(s) 436, 757, 873, 909, 928
Sau96I GGNCC 1 cut(s) 460
SchI GAGTC 1 cut(s) 350
ScrFI CCNGG 3 cut(s) 10, 207, 473
SduI GDGCHC 1 cut(s) 480
SetI ASST 6 cut(s) 128, 359, 576, 750, 768, 899
SfaNI GCATC 1 cut(s) 774
SfcI CTRYAG 1 cut(s) 869
SfiI GGCCNNNNNGGCC 1 cut(s) 978
SfoI GGCGCC 1 cut(s) 617
SmiMI CAYNNNNRTG 1 cut(s) 732
SmlI CTYRAG 2 cut(s) 169, 788
SmoI CTYRAG 2 cut(s) 169, 788
Sse9I AATT 6 cut(s) 152, 186, 220, 252, 269, 774
SseBI AGGCCT 1 cut(s) 981
SsiI CCGC 3 cut(s) 34, 946, 973
SspDI GGCGCC 1 cut(s) 615
SspMI CTAG 1 cut(s) 129
StuI AGGCCT 1 cut(s) 981
StyD4I CCNGG 3 cut(s) 8, 205, 471
StyI CCWWGG 2 cut(s) 276, 493
TaaI ACNGT 1 cut(s) 40
TaqI TCGA 1 cut(s) 558
TasI AATT 6 cut(s) 152, 186, 220, 252, 269, 774
TauI GCSGC 2 cut(s) 36, 975
TfiI GAWTC 1 cut(s) 285
Tru1I TTAA 6 cut(s) 189, 267, 648, 768, 794, 1006
Tru9I TTAA 6 cut(s) 189, 267, 648, 768, 794, 1006
TscAI CASTG 2 cut(s) 43, 64
TseFI GTSAC 1 cut(s) 136
TseI GCWGC 5 cut(s) 30, 568, 571, 763, 848
Tsp45I GTSAC 1 cut(s) 136
TspDTI ATGAA 3 cut(s) 229, 558, 855
TspGWI ACGGA 2 cut(s) 341, 641
TspRI CASTG 2 cut(s) 43, 64
VspI ATTAAT 1 cut(s) 189
XceI RCATGY 1 cut(s) 848
XspI CTAG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.