MD15G1403700.v1.1
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000615
Physical Location & Seq
Reverse (-)
50460656 .. 50465455
4800 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1403700.v1.1.491

Sequence Viewer

Length: 1011 bp
ATGGGTGGAAGTTCGATTGATGATGACTGGGAGCTTGCTTCACTGACTAGTGCTGTTCGCACTGTGGTCTTAGTTGGACGTACTGGTAATGGAAAAAGTGCAACGGGAAACAGTATTCTTGGAAGAAAGGCCTTCAAGTCCAGGACAAGCTCCTCTGGTGTTACGAGTACTTGTGAAATGGAGAAAACTGTATTGAGAGATGGACAAGTCGTAAATGTTATTGACACTCCTGGTCTTTTTGATTTTTCTGCAAAGTCAGACTTTGTTGGCAAAGAAATTGTCAGATGTATTGATTTGGCGAAAGATGGAATCCATGCTGTGGTTGTAGTTTTCTCAGTTAGGACTCGCTTTTCACAAGAAGAAGAAGCTGCATTGCGTAGCTTGCAAACTTTGTTTGGAAGCAAAATTATTGATTATATGATTGTGGTCTTTACTGGGGGAGATGATCTTGAAGACAATGATGAGACCTTGGATGACTATTTGGGCCGTGAATGCCCAGAACCTTTAAAGGACATCCTTACTCTGTGTGAAAACCGCTGTGTGCTTTTTGATAATAAGACTAAGGATGAAAGTAAGAGGGTTAAACAAGTCGAGAACCTTCTATCCCTTGTAAACAAGGTCATATCACAAAATGGTGGGCGACCGTACACAGATGAGATATTTGCTGAAGTGAAGAAAGGGGCCATTAAACTTCGTGATCAACAAGAAGAGGTCAACTCCTTGAAGGGGTATTCCAAACGAGAAATATCTGAATTGAAGGATCAGATGCAGCGTGCACATGACGAGCAGCTTAAGCGGATTACTGAGATGGTCGAGTCAAAGTTAAGAGAGACCACTATGAGGCTTGAGCAACAGTTGGCAGATGAACAAGCTGCACGTCTGAGAGCAGAAGAGAATGCTCAACAGGCTCAGCTGAAGTCTGATGATGAAATTCGAAAGCTTCGAGAACATTTAATGAAAGCAGAGGAGGAGCTTCGTAAAAGAGGTGAAACCAAGTGTGTCATTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

337

Amino Acids

37.8

Weight (kDa)

5.31

Isoelectric Point (pI)

37.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIG1 PF04548 20 - 235 3e-85 AIG1 family
MMR_HSR1 PF01926 21 - 128 7.5e-09 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000615)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33970 AT1G33970 AT1G33970 AT1G33970 AT1G33970
fragaria_vesca FvH4_5g32530 FvH4_5g32530
malus_domestica MD15G1403700.v1.1
prunus_persica Prupe.1G549700_v2.0.a1 Prupe.1G549700_v2.0.a1
pyrus_communis pycom15g36100
rosa_chinensis RchiOBHm_Chr7g0226331 RchiOBHm_Chr7g0229101 RchiOBHm_Chr7g0229111 RchiOBHm_Chr7g0229141 RchiOBHm_Chr7g0229161 RchiOBHm_Chr7g0229171 RchiOBHm_Chr7g0229211 RchiOBHm_Chr7g0229241 RchiOBHm_Chr7g0229381 RchiOBHm_Chr7g0229761 RchiOBHm_Chr7g0229911
rosa_laevigata RLG00000000796 RLG00000001464 RLG00000001466 RLG00000001469 RLG00000001523 RLG00000001526 RLG00000001529 RLG00000001530 RLG00000001749 RLG00000001913 RLG00000002114 RLG00000002115 RLG00000023248 RLG00000023250
rosa_multiflora Rmu_co8281135.1_g000001 Rmu_sc0000271.1_g000002 Rmu_sc0000271.1_g000007 Rmu_sc0000271.1_g000014 Rmu_sc0000693.1_g000012 Rmu_sc0000693.1_g000015 Rmu_sc0000693.1_g000023 Rmu_sc0001044.1_g000005 Rmu_sc0006689.1_g000007 Rmu_sc0012733.1_g000005
rosa_roxburghii Rroxscaffold_3G00230540 Rroxscaffold_3G00230590 Rroxscaffold_3G00230600 Rroxscaffold_3G00230700 Rroxscaffold_3G00230710 Rroxscaffold_3G00232980 Rroxscaffold_3G00237610
rosa_rugosa Rorug07G0203800 Rorug07G0203900 Rorug07G0256100 Rorug07G0256400 Rorug07G0256400 Rorug07G0256400 Rorug07G0256500 Rorug07G0256600 Rorug07G0256600 Rorug07G0257100 Rorug07G0257200 Rorug07G0257300 Rorug07G0257400
rosa_samantha Rh7DG401100 Rh7DG401300 Rh7DG401900 Rh7DG402100 Rh7DG402300 Rh7DG402700
rosa_wichuraiana Rw0G001910 Rw0G001930 Rw0G001940 Rw7G033790 Rw7G033810 Rw7G033840 Rw7G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 319
AciI CCGC 2 cut(s) 535, 796
AclWI GGATC 1 cut(s) 768
AcsI RAATTY 1 cut(s) 930
AcuI CTGAAG 2 cut(s) 687, 935
AfaI GTAC 3 cut(s) 82, 169, 647
AfiI CCNNNNNNNGG 3 cut(s) 319, 726, 840
AflII CTTAAG 1 cut(s) 791
AgsI TTSAA 4 cut(s) 136, 452, 724, 757
AhlI ACTAGT 1 cut(s) 47
AjiI CACGTC 1 cut(s) 878
AjnI CCWGG 2 cut(s) 140, 229
AloI GAACNNNNNNTCC 2 cut(s) 587, 619
AluBI AGCT 9 cut(s) 34, 150, 368, 381, 790, 872, 913, 940, 973
AluI AGCT 9 cut(s) 34, 150, 368, 381, 790, 872, 913, 940, 973
Alw21I GWGCWC 1 cut(s) 778
Alw26I GTCTC 2 cut(s) 458, 824
Alw44I GTGCAC 1 cut(s) 774
AlwI GGATC 1 cut(s) 768
AoxI GGCC 3 cut(s) 129, 484, 681
ApaLI GTGCAC 1 cut(s) 774
ApeKI GCWGC 4 cut(s) 368, 769, 787, 872
ApoI RAATTY 1 cut(s) 930
ArsI GACNNNNNNTTYG 2 cut(s) 264, 296
AspS9I GGNCC 2 cut(s) 484, 681
AsuHPI GGTGA 1 cut(s) 998
AsuII TTCGAA 1 cut(s) 934
BaeGI GKGCMC 1 cut(s) 778
BbsI GAAGAC 1 cut(s) 459
Bbv12I GWGCWC 1 cut(s) 778
BbvI GCAGC 4 cut(s) 355, 781, 799, 859
BccI CCATC 3 cut(s) 194, 299, 802
BceAI ACGGC 1 cut(s) 471
BciT130I CCWGG 2 cut(s) 142, 231
BclI TGATCA 1 cut(s) 697
BcoDI GTCTC 2 cut(s) 458, 824
BcuI ACTAGT 1 cut(s) 47
BfaI CTAG 1 cut(s) 48
BfrI CTTAAG 1 cut(s) 791
BisI GCNGC 4 cut(s) 369, 770, 788, 873
BlpI GCTNAGC 1 cut(s) 909
BlsI GCNGC 4 cut(s) 370, 771, 789, 874
BmcAI AGTACT 1 cut(s) 169
Bme1390I CCNGG 2 cut(s) 142, 231
BmgBI CACGTC 1 cut(s) 878
BmgT120I GGNCC 2 cut(s) 484, 681
BmiI GGNNCC 1 cut(s) 682
BmrFI CCNGG 2 cut(s) 142, 231
BmrI ACTGGG 2 cut(s) 37, 444
BmsI GCATC 1 cut(s) 756
BmuI ACTGGG 2 cut(s) 37, 444
BpiI GAAGAC 1 cut(s) 459
BplI GAGNNNNNCTC 2 cut(s) 701, 733
Bpu1102I GCTNAGC 1 cut(s) 909
Bpu14I TTCGAA 1 cut(s) 934
BpuEI CTTGAG 1 cut(s) 866
BsaI GGTCTC 2 cut(s) 458, 824
BsaJI CCNNGG 1 cut(s) 468
Bsc4I CCNNNNNNNGG 3 cut(s) 319, 726, 840
Bse1I ACTGG 3 cut(s) 32, 88, 439
Bse3DI GCAATG 1 cut(s) 371
BseBI CCWGG 2 cut(s) 142, 231
BseDI CCNNGG 1 cut(s) 468
BseGI GGATG 3 cut(s) 478, 513, 571
BseLI CCNNNNNNNGG 3 cut(s) 319, 726, 840
BseMI GCAATG 1 cut(s) 371
BseMII CTCAG 4 cut(s) 348, 795, 872, 923
BseNI ACTGG 3 cut(s) 32, 88, 439
BseRI GAGGAG 3 cut(s) 142, 980, 983
BseSI GKGCMC 1 cut(s) 778
BseXI GCAGC 4 cut(s) 355, 781, 799, 859
BsgI GTGCAG 1 cut(s) 858
Bsh1285I CGRYCG 1 cut(s) 644
BshFI GGCC 3 cut(s) 131, 486, 683
BsiEI CGRYCG 1 cut(s) 644
BsiHKAI GWGCWC 1 cut(s) 778
BslI CCNNNNNNNGG 3 cut(s) 319, 726, 840
BsmAI GTCTC 2 cut(s) 458, 824
BsmI GAATGC 2 cut(s) 497, 901
BsnI GGCC 3 cut(s) 131, 486, 683
Bso31I GGTCTC 2 cut(s) 458, 824
Bsp119I TTCGAA 1 cut(s) 934
Bsp1286I GDGCHC 1 cut(s) 778
Bsp143I GATC 3 cut(s) 445, 697, 760
Bsp1720I GCTNAGC 1 cut(s) 909
BspACI CCGC 2 cut(s) 535, 796
BspANI GGCC 3 cut(s) 131, 486, 683
BspCNI CTCAG 4 cut(s) 347, 796, 873, 922
BspLI GGNNCC 1 cut(s) 682
BspPI GGATC 1 cut(s) 768
BspT104I TTCGAA 1 cut(s) 934
BspTI CTTAAG 1 cut(s) 791
BspTNI GGTCTC 2 cut(s) 458, 824
BsrDI GCAATG 1 cut(s) 371
BsrI ACTGG 3 cut(s) 32, 88, 439
BssECI CCNNGG 1 cut(s) 468
BssMI GATC 3 cut(s) 445, 697, 760
BssT1I CCWWGG 1 cut(s) 468
Bst2UI CCWGG 2 cut(s) 142, 231
Bst4CI ACNGT 5 cut(s) 64, 113, 190, 645, 855
Bst6I CTCTTC 2 cut(s) 702, 885
BstAFI CTTAAG 1 cut(s) 791
BstBI TTCGAA 1 cut(s) 934
BstC8I GCNNGC 3 cut(s) 36, 383, 774
BstDEI CTNAG 6 cut(s) 70, 334, 561, 804, 881, 909
BstF5I GGATG 3 cut(s) 478, 513, 571
BstKTI GATC 3 cut(s) 448, 700, 763
BstMAI GTCTC 2 cut(s) 458, 824
BstMBI GATC 3 cut(s) 445, 697, 760
BstMCI CGRYCG 1 cut(s) 644
BstMWI GCNNNNNNNGC 4 cut(s) 382, 492, 793, 905
BstNI CCWGG 2 cut(s) 142, 231
BstSCI CCNGG 2 cut(s) 140, 229
BstSLI GKGCMC 1 cut(s) 778
BstV1I GCAGC 4 cut(s) 355, 781, 799, 859
BstV2I GAAGAC 1 cut(s) 459
BsuRI GGCC 3 cut(s) 131, 486, 683
BtrI CACGTC 1 cut(s) 878
BtsCI GGATG 3 cut(s) 478, 513, 571
BtsIMutI CAGTG 2 cut(s) 41, 60
Cac8I GCNNGC 3 cut(s) 36, 383, 774
Cfr13I GGNCC 2 cut(s) 484, 681
Csp6I GTAC 3 cut(s) 81, 168, 646
CviAII CATG 2 cut(s) 314, 779
CviQI GTAC 3 cut(s) 81, 168, 646
DdeI CTNAG 6 cut(s) 70, 334, 561, 804, 881, 909
DpnI GATC 3 cut(s) 447, 699, 762
DpnII GATC 3 cut(s) 445, 697, 760
DraI TTTAAA 1 cut(s) 507
Eam1104I CTCTTC 2 cut(s) 702, 885
EarI CTCTTC 2 cut(s) 702, 885
Eco130I CCWWGG 1 cut(s) 468
Eco147I AGGCCT 1 cut(s) 131
Eco31I GGTCTC 2 cut(s) 458, 824
Eco57I CTGAAG 2 cut(s) 687, 935
EcoRII CCWGG 2 cut(s) 140, 229
EcoT14I CCWWGG 1 cut(s) 468
ErhI CCWWGG 1 cut(s) 468
FaeI CATG 2 cut(s) 317, 782
FaiI YATR 7 cut(s) 315, 417, 419, 623, 780, 839, 1009
FalI AAGNNNNNCTT 2 cut(s) 245, 277
FatI CATG 2 cut(s) 313, 778
FbaI TGATCA 1 cut(s) 697
Fnu4HI GCNGC 4 cut(s) 369, 770, 788, 873
FokI GGATG 3 cut(s) 485, 500, 578
Fsp4HI GCNGC 4 cut(s) 369, 770, 788, 873
FspBI CTAG 1 cut(s) 48
GluI GCNGC 4 cut(s) 369, 770, 788, 873
HaeIII GGCC 3 cut(s) 131, 486, 683
Hin1II CATG 2 cut(s) 317, 782
HincII GTYRAC 1 cut(s) 715
HindII GTYRAC 1 cut(s) 715
HindIII AAGCTT 1 cut(s) 938
HinfI GANTC 3 cut(s) 309, 343, 815
HphI GGTGA 1 cut(s) 998
Hpy166II GTNNAC 4 cut(s) 613, 648, 715, 776
Hpy188I TCNGA 6 cut(s) 259, 284, 751, 765, 882, 922
Hpy188III TCNNGA 4 cut(s) 449, 592, 695, 944
Hpy8I GTNNAC 4 cut(s) 613, 648, 715, 776
HpyAV CCTTC 4 cut(s) 142, 608, 718, 751
HpyCH4III ACNGT 5 cut(s) 64, 113, 190, 645, 855
HpyCH4IV ACGT 2 cut(s) 79, 877
HpyCH4V TGCA 7 cut(s) 101, 251, 371, 385, 769, 776, 875
HpyF10VI GCNNNNNNNGC 4 cut(s) 382, 492, 793, 905
HpyF3I CTNAG 6 cut(s) 70, 334, 561, 804, 881, 909
HpySE526I ACGT 2 cut(s) 79, 877
Hsp92II CATG 2 cut(s) 317, 782
Ksp22I TGATCA 1 cut(s) 697
Kzo9I GATC 3 cut(s) 445, 697, 760
LmnI GCTCC 3 cut(s) 31, 155, 970
Lsp1109I GCAGC 4 cut(s) 355, 781, 799, 859
LweI GCATC 1 cut(s) 756
MaeI CTAG 1 cut(s) 48
MaeII ACGT 2 cut(s) 79, 877
MaeIII GTNAC 1 cut(s) 160
MalI GATC 3 cut(s) 447, 699, 762
MboI GATC 3 cut(s) 445, 697, 760
MboII GAAGA 7 cut(s) 135, 371, 374, 464, 685, 719, 902
MhlI GDGCHC 1 cut(s) 778
MluCI AATT 4 cut(s) 276, 405, 752, 930
MlyI GAGTC 2 cut(s) 337, 824
MmeI TCCRAC 1 cut(s) 55
MnlI CCTC 7 cut(s) 163, 570, 703, 834, 958, 961, 977
MseI TTAA 6 cut(s) 506, 582, 687, 792, 824, 953
MspA1I CMGCKG 2 cut(s) 537, 913
MspCI CTTAAG 1 cut(s) 791
MspR9I CCNGG 2 cut(s) 142, 231
Mva1269I GAATGC 2 cut(s) 497, 901
MvaI CCWGG 2 cut(s) 142, 231
MwoI GCNNNNNNNGC 4 cut(s) 382, 492, 793, 905
NdeII GATC 3 cut(s) 445, 697, 760
NlaIII CATG 2 cut(s) 317, 782
NlaIV GGNNCC 1 cut(s) 682
NspV TTCGAA 1 cut(s) 934
PceI AGGCCT 1 cut(s) 131
PcsI WCGNNNNNNNCGW 1 cut(s) 940
PctI GAATGC 2 cut(s) 497, 901
PfeI GAWTC 1 cut(s) 309
PflMI CCANNNNNTGG 1 cut(s) 319
PfoI TCCNGGA 1 cut(s) 140
PkrI GCNGC 4 cut(s) 370, 771, 789, 874
PleI GAGTC 2 cut(s) 337, 823
PpsI GAGTC 2 cut(s) 337, 823
Psp6I CCWGG 2 cut(s) 140, 229
PspGI CCWGG 2 cut(s) 140, 229
PspN4I GGNNCC 1 cut(s) 682
PspPI GGNCC 2 cut(s) 484, 681
PvuII CAGCTG 1 cut(s) 913
RsaI GTAC 3 cut(s) 82, 169, 647
RsaNI GTAC 3 cut(s) 81, 168, 646
SaqAI TTAA 6 cut(s) 506, 582, 687, 792, 824, 953
SatI GCNGC 4 cut(s) 369, 770, 788, 873
Sau3AI GATC 3 cut(s) 445, 697, 760
Sau96I GGNCC 2 cut(s) 484, 681
ScaI AGTACT 1 cut(s) 169
SchI GAGTC 2 cut(s) 337, 824
ScrFI CCNGG 2 cut(s) 142, 231
SduI GDGCHC 1 cut(s) 778
SfaNI GCATC 1 cut(s) 756
SfuI TTCGAA 1 cut(s) 934
SmlI CTYRAG 2 cut(s) 791, 845
SmoI CTYRAG 2 cut(s) 791, 845
SpeI ACTAGT 1 cut(s) 47
Sse9I AATT 4 cut(s) 276, 405, 752, 930
SseBI AGGCCT 1 cut(s) 131
SsiI CCGC 2 cut(s) 535, 796
SspMI CTAG 1 cut(s) 48
StuI AGGCCT 1 cut(s) 131
StyD4I CCNGG 2 cut(s) 140, 229
StyI CCWWGG 1 cut(s) 468
TaaI ACNGT 5 cut(s) 64, 113, 190, 645, 855
TaiI ACGT 2 cut(s) 82, 880
TaqI TCGA 5 cut(s) 14, 591, 813, 934, 943
TasI AATT 4 cut(s) 276, 405, 752, 930
TatI WGTACW 1 cut(s) 167
TfiI GAWTC 1 cut(s) 309
Tru1I TTAA 6 cut(s) 506, 582, 687, 792, 824, 953
Tru9I TTAA 6 cut(s) 506, 582, 687, 792, 824, 953
TscAI CASTG 2 cut(s) 48, 67
TseI GCWGC 4 cut(s) 368, 769, 787, 872
TspDTI ATGAA 4 cut(s) 582, 879, 942, 971
TspRI CASTG 2 cut(s) 48, 67
Van91I CCANNNNNTGG 1 cut(s) 319
Vha464I CTTAAG 1 cut(s) 791
VneI GTGCAC 1 cut(s) 774
XapI RAATTY 1 cut(s) 930
XspI CTAG 1 cut(s) 48
ZrmI AGTACT 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.