Rmu_sc0006689.1_g000007
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006689.1
OG0000615
Physical Location & Seq
Forward (+)
28157 .. 28838
682 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006689.1_g000007.1.cds

Sequence Viewer

Length: 534 bp
atgggaggacgttcgattgatgttgcccaggaacttccctttcctaatgctgctcgcactatggtcttatttggacgcactggtaatggaaaaagtgcaacaggcaacagcattcttggcaaaagtgccttcatttccaagcgtagctctagtggtgtcacgaccagtactgaattgaagactgctatcttgagagatggacaacaaattaatgttatagacactcctggtctttttgataattctgccaaatcagactttattggcaaagaaattgcccagtgcattaaattggccgaggatgggatccatgctgttcttgtggttctctcaactagaactcgctttacaaaagaagagcaatctgcaatctgtagcttggaaaatctatttggacgtaaaatctttgactatacgattgttgtctttacgggaggagatgagttggaagaagatgagactttggaagattatttgggccgtgattgcccggggcctttgaaggtaaatttgtttcttcaatttgggacatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

177

Amino Acids

19.16

Weight (kDa)

5.1

Isoelectric Point (pI)

34.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000615)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33970 AT1G33970 AT1G33970 AT1G33970 AT1G33970
fragaria_vesca FvH4_5g32530 FvH4_5g32530
malus_domestica MD15G1403700.v1.1
prunus_persica Prupe.1G549700_v2.0.a1 Prupe.1G549700_v2.0.a1
pyrus_communis pycom15g36100
rosa_chinensis RchiOBHm_Chr7g0226331 RchiOBHm_Chr7g0229101 RchiOBHm_Chr7g0229111 RchiOBHm_Chr7g0229141 RchiOBHm_Chr7g0229161 RchiOBHm_Chr7g0229171 RchiOBHm_Chr7g0229211 RchiOBHm_Chr7g0229241 RchiOBHm_Chr7g0229381 RchiOBHm_Chr7g0229761 RchiOBHm_Chr7g0229911
rosa_laevigata RLG00000000796 RLG00000001464 RLG00000001466 RLG00000001469 RLG00000001523 RLG00000001526 RLG00000001529 RLG00000001530 RLG00000001749 RLG00000001913 RLG00000002114 RLG00000002115 RLG00000023248 RLG00000023250
rosa_multiflora Rmu_co8281135.1_g000001 Rmu_sc0000271.1_g000002 Rmu_sc0000271.1_g000007 Rmu_sc0000271.1_g000014 Rmu_sc0000693.1_g000012 Rmu_sc0000693.1_g000015 Rmu_sc0000693.1_g000023 Rmu_sc0001044.1_g000005 Rmu_sc0006689.1_g000007 Rmu_sc0012733.1_g000005
rosa_roxburghii Rroxscaffold_3G00230540 Rroxscaffold_3G00230590 Rroxscaffold_3G00230600 Rroxscaffold_3G00230700 Rroxscaffold_3G00230710 Rroxscaffold_3G00232980 Rroxscaffold_3G00237610
rosa_rugosa Rorug07G0203800 Rorug07G0203900 Rorug07G0256100 Rorug07G0256400 Rorug07G0256400 Rorug07G0256400 Rorug07G0256500 Rorug07G0256600 Rorug07G0256600 Rorug07G0257100 Rorug07G0257200 Rorug07G0257300 Rorug07G0257400
rosa_samantha Rh7DG401100 Rh7DG401300 Rh7DG401900 Rh7DG402100 Rh7DG402300 Rh7DG402700
rosa_wichuraiana Rw0G001910 Rw0G001930 Rw0G001940 Rw7G033790 Rw7G033810 Rw7G033840 Rw7G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 301, 314
AcoI YGGCCR 1 cut(s) 294
AcsI RAATTY 1 cut(s) 508
AfaI GTAC 1 cut(s) 169
AfiI CCNNNNNNNGG 1 cut(s) 303
AgsI TTSAA 3 cut(s) 178, 502, 521
AjnI CCWGG 2 cut(s) 27, 226
AjuI GAANNNNNNNTTGG 2 cut(s) 375, 407
AluBI AGCT 2 cut(s) 147, 378
AluI AGCT 2 cut(s) 147, 378
Alw26I GTCTC 1 cut(s) 452
AlwI GGATC 2 cut(s) 301, 314
Ama87I CYCGRG 1 cut(s) 490
AoxI GGCC 3 cut(s) 294, 478, 494
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 1 cut(s) 508
AseI ATTAAT 1 cut(s) 210
AspS9I GGNCC 2 cut(s) 478, 494
AsuC2I CCSGG 2 cut(s) 491, 492
AvaI CYCGRG 1 cut(s) 490
BamHI GGATCC 1 cut(s) 306
BbsI GAAGAC 1 cut(s) 185
BbvI GCAGC 1 cut(s) 37
BccI CCATC 2 cut(s) 191, 296
BceAI ACGGC 1 cut(s) 465
BciT130I CCWGG 2 cut(s) 29, 228
BcnI CCSGG 2 cut(s) 491, 492
BcoDI GTCTC 1 cut(s) 452
BfaI CTAG 2 cut(s) 150, 336
BfmI CTRYAG 1 cut(s) 373
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
BmcAI AGTACT 1 cut(s) 169
Bme1390I CCNGG 4 cut(s) 29, 228, 491, 492
BmeT110I CYCGRG 1 cut(s) 490
BmgT120I GGNCC 2 cut(s) 478, 494
BmiI GGNNCC 2 cut(s) 308, 495
BmrFI CCNGG 4 cut(s) 29, 228, 491, 492
BmrI ACTGGG 1 cut(s) 274
BmuI ACTGGG 1 cut(s) 274
BpiI GAAGAC 1 cut(s) 185
BpuEI CTTGAG 1 cut(s) 211
BpuMI CCSGG 2 cut(s) 491, 492
BsaJI CCNNGG 4 cut(s) 27, 297, 490, 491
Bsc4I CCNNNNNNNGG 1 cut(s) 303
Bse1I ACTGG 3 cut(s) 85, 165, 280
BseBI CCWGG 2 cut(s) 29, 228
BseDI CCNNGG 4 cut(s) 27, 297, 490, 491
BseGI GGATG 1 cut(s) 307
BseLI CCNNNNNNNGG 1 cut(s) 303
BseNI ACTGG 3 cut(s) 85, 165, 280
BseRI GAGGAG 1 cut(s) 450
BseXI GCAGC 1 cut(s) 37
BshFI GGCC 3 cut(s) 296, 480, 496
BsiHKCI CYCGRG 1 cut(s) 490
BsiSI CCGG 1 cut(s) 491
BslI CCNNNNNNNGG 1 cut(s) 303
BsmAI GTCTC 1 cut(s) 452
BsmI GAATGC 1 cut(s) 111
BsnI GGCC 3 cut(s) 296, 480, 496
BsoBI CYCGRG 1 cut(s) 490
Bsp143I GATC 1 cut(s) 306
BspANI GGCC 3 cut(s) 296, 480, 496
BspLI GGNNCC 2 cut(s) 308, 495
BspPI GGATC 2 cut(s) 301, 314
BspQI GCTCTTC 1 cut(s) 351
BsrI ACTGG 3 cut(s) 85, 165, 280
BssECI CCNNGG 4 cut(s) 27, 297, 490, 491
BssMI GATC 1 cut(s) 306
Bst2UI CCWGG 2 cut(s) 29, 228
Bst6I CTCTTC 1 cut(s) 351
BstC8I GCNNGC 1 cut(s) 55
BstF5I GGATG 1 cut(s) 307
BstKTI GATC 1 cut(s) 309
BstMAI GTCTC 1 cut(s) 452
BstMBI GATC 1 cut(s) 306
BstMWI GCNNNNNNNGC 2 cut(s) 117, 486
BstNI CCWGG 2 cut(s) 29, 228
BstSCI CCNGG 4 cut(s) 27, 226, 489, 490
BstSFI CTRYAG 1 cut(s) 373
BstV1I GCAGC 1 cut(s) 37
BstV2I GAAGAC 1 cut(s) 185
BstX2I RGATCY 1 cut(s) 306
BstYI RGATCY 1 cut(s) 306
BsuRI GGCC 3 cut(s) 296, 480, 496
BtsCI GGATG 1 cut(s) 307
BtsIMutI CAGTG 2 cut(s) 78, 287
Cac8I GCNNGC 1 cut(s) 55
Cfr13I GGNCC 2 cut(s) 478, 494
Cfr9I CCCGGG 1 cut(s) 490
CseI GACGC 1 cut(s) 84
Csp6I GTAC 1 cut(s) 168
CviAII CATG 2 cut(s) 311, 531
CviJI RGCY 5 cut(s) 147, 296, 378, 480, 496
CviKI_1 RGCY 5 cut(s) 147, 296, 378, 480, 496
CviQI GTAC 1 cut(s) 168
DpnI GATC 1 cut(s) 308
DpnII GATC 1 cut(s) 306
EaeI YGGCCR 1 cut(s) 294
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
Eco88I CYCGRG 1 cut(s) 490
EcoO109I RGGNCCY 1 cut(s) 494
EcoRII CCWGG 2 cut(s) 27, 226
FaeI CATG 2 cut(s) 314, 534
FaiI YATR 5 cut(s) 62, 218, 312, 414, 532
FatI CATG 2 cut(s) 310, 530
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 1 cut(s) 51
FspBI CTAG 2 cut(s) 150, 336
GluI GCNGC 1 cut(s) 51
HaeIII GGCC 3 cut(s) 296, 480, 496
HapII CCGG 1 cut(s) 491
HgaI GACGC 1 cut(s) 84
Hin1II CATG 2 cut(s) 314, 534
HpaII CCGG 1 cut(s) 491
Hpy188I TCNGA 1 cut(s) 256
Hpy188III TCNNGA 2 cut(s) 160, 190
HpyAV CCTTC 2 cut(s) 139, 496
HpyCH4IV ACGT 2 cut(s) 10, 397
HpyCH4V TGCA 3 cut(s) 98, 285, 368
HpyF10VI GCNNNNNNNGC 2 cut(s) 117, 486
HpySE526I ACGT 2 cut(s) 10, 397
Hsp92II CATG 2 cut(s) 314, 534
Kzo9I GATC 1 cut(s) 306
LguI GCTCTTC 1 cut(s) 351
LpnPI CCDG 9 cut(s) 14, 41, 66, 87, 178, 213, 240, 293, 504
Lsp1109I GCAGC 1 cut(s) 37
MaeI CTAG 2 cut(s) 150, 336
MaeII ACGT 2 cut(s) 10, 397
MaeIII GTNAC 1 cut(s) 157
MalI GATC 1 cut(s) 308
MboI GATC 1 cut(s) 306
MboII GAAGA 6 cut(s) 190, 368, 461, 464, 479, 509
MflI RGATCY 1 cut(s) 306
MluCI AATT 7 cut(s) 173, 207, 241, 273, 290, 508, 521
MmeI TCCRAC 1 cut(s) 426
MnlI CCTC 2 cut(s) 292, 428
MseI TTAA 2 cut(s) 210, 288
MspI CCGG 1 cut(s) 491
MspR9I CCNGG 4 cut(s) 29, 228, 491, 492
Mva1269I GAATGC 1 cut(s) 111
MvaI CCWGG 2 cut(s) 29, 228
MwoI GCNNNNNNNGC 2 cut(s) 117, 486
NciI CCSGG 2 cut(s) 491, 492
NdeII GATC 1 cut(s) 306
NlaIII CATG 2 cut(s) 314, 534
NlaIV GGNNCC 2 cut(s) 308, 495
NmeAIII GCCGAG 1 cut(s) 322
NmuCI GTSAC 1 cut(s) 157
PciSI GCTCTTC 1 cut(s) 351
PctI GAATGC 1 cut(s) 111
PkrI GCNGC 1 cut(s) 52
PshBI ATTAAT 1 cut(s) 210
Psp6I CCWGG 2 cut(s) 27, 226
PspGI CCWGG 2 cut(s) 27, 226
PspN4I GGNNCC 2 cut(s) 308, 495
PspPI GGNCC 2 cut(s) 478, 494
PsrI GAACNNNNNNTAC 2 cut(s) 331, 363
PsuI RGATCY 1 cut(s) 306
RsaI GTAC 1 cut(s) 169
RsaNI GTAC 1 cut(s) 168
SapI GCTCTTC 1 cut(s) 351
SaqAI TTAA 2 cut(s) 210, 288
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 1 cut(s) 306
Sau96I GGNCC 2 cut(s) 478, 494
ScaI AGTACT 1 cut(s) 169
ScrFI CCNGG 4 cut(s) 29, 228, 491, 492
SetI ASST 5 cut(s) 13, 149, 380, 400, 507
SfcI CTRYAG 1 cut(s) 373
SmaI CCCGGG 1 cut(s) 492
SmlI CTYRAG 1 cut(s) 190
SmoI CTYRAG 1 cut(s) 190
Sse9I AATT 7 cut(s) 173, 207, 241, 273, 290, 508, 521
SspMI CTAG 2 cut(s) 150, 336
StyD4I CCNGG 4 cut(s) 27, 226, 489, 490
TaiI ACGT 2 cut(s) 13, 400
TaqI TCGA 1 cut(s) 14
TasI AATT 7 cut(s) 173, 207, 241, 273, 290, 508, 521
TatI WGTACW 1 cut(s) 167
Tru1I TTAA 2 cut(s) 210, 288
Tru9I TTAA 2 cut(s) 210, 288
TscAI CASTG 2 cut(s) 85, 287
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 1 cut(s) 121
TspMI CCCGGG 1 cut(s) 490
TspRI CASTG 2 cut(s) 85, 287
VspI ATTAAT 1 cut(s) 210
XapI RAATTY 1 cut(s) 508
XmaI CCCGGG 1 cut(s) 490
XspI CTAG 2 cut(s) 150, 336
ZrmI AGTACT 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.