Rh7DG401300
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000615
Physical Location & Seq
Forward (+)
55224118 .. 55280130
56013 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG401300.1

Sequence Viewer

Length: 996 bp
ATGGATGGAAGTTCGATTGATGTTGTCAGAGAACTTCCCATTTCGATTGATGTTGTCAGGGAACTTCCCATTTCGATTGATGTTGTCAGGGAACTTCCCATTTCTAATGCTGCTCGCACTTTGGTCTTAGTTGGACGCGCTGGTAATGGAAAAAGTGCAACAGGCAACAGCATTCTTGGCAAAAACGCCTTCAAGGCCAATCATAGCTCTAGTGGTGTCACGACCACTACTGAATTGAAGACTGCTATCTTGAGAGATGGACAACAAATTAATGTTATAGACACTCCTGGTATTTTTGATAATTCTGCCAAATCAGACTTTATTGGCAAAGAAATTGCCCAATGCATTAATTTGGCTGAGGATGGGATCCATGCTGTTCTTGTGGTTCTCTCAACTAGAACTCGCTTTACAAAAGAAGAGGAGTCTGCAATCCTTAGCTTGCAAACTGTATTTGGAAGTAAAATCATTGACTATATGATTGTTGTCTTTACGGGAGGAGATGGCTTGGAAGAAAATGATGAGACTTTGGAAGATTATTTGAGCCGTGATTGCCCGGAGCCTTTGAAGGAAATCCTTGGTCTGTGTGGAAATCGTCGTGTGCTTTTTGATAACAAGACTAAGGATGAAAGCAAGAGGGTCGAACAAGTGCAGCAGCTTCTCTCCCTTGTAAACTCGGTTATAGCACAGAATGGTGGCCGGCCATACACGGATGAGAGATTTGCTGAAGTGAAGAAAGGGGCTATGAAACTTCGTGATCAACAAGAAGAGGTTGCTTCGAAGGGGTATTCAAAACAAGAAATAGATCGTTTTAATGAGCAGATGCAGCGTCAATATGATCTGCAGCTTAAACAAATTACTGAGATGAATGCTGGGCAAAGCCATCAATGGCCGCCTTGCTTGTGTGGGTGGATTGTATTGCTTGGTAAATGCTTAATCATTTCTGCTTCTAAGAGAATGAAGAAGGCTGGATTGGTCGAAAAAAATATGGTGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

331

Amino Acids

36.56

Weight (kDa)

5.65

Isoelectric Point (pI)

38.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIG1 PF04548 40 - 253 2.5e-80 AIG1 family
FeoB_N PF02421 40 - 129 6.5e-06 Ferrous iron transport protein B
MMR_HSR1 PF01926 41 - 143 7.1e-10 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000615)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33970 AT1G33970 AT1G33970 AT1G33970 AT1G33970
fragaria_vesca FvH4_5g32530 FvH4_5g32530
malus_domestica MD15G1403700.v1.1
prunus_persica Prupe.1G549700_v2.0.a1 Prupe.1G549700_v2.0.a1
pyrus_communis pycom15g36100
rosa_chinensis RchiOBHm_Chr7g0226331 RchiOBHm_Chr7g0229101 RchiOBHm_Chr7g0229111 RchiOBHm_Chr7g0229141 RchiOBHm_Chr7g0229161 RchiOBHm_Chr7g0229171 RchiOBHm_Chr7g0229211 RchiOBHm_Chr7g0229241 RchiOBHm_Chr7g0229381 RchiOBHm_Chr7g0229761 RchiOBHm_Chr7g0229911
rosa_laevigata RLG00000000796 RLG00000001464 RLG00000001466 RLG00000001469 RLG00000001523 RLG00000001526 RLG00000001529 RLG00000001530 RLG00000001749 RLG00000001913 RLG00000002114 RLG00000002115 RLG00000023248 RLG00000023250
rosa_multiflora Rmu_co8281135.1_g000001 Rmu_sc0000271.1_g000002 Rmu_sc0000271.1_g000007 Rmu_sc0000271.1_g000014 Rmu_sc0000693.1_g000012 Rmu_sc0000693.1_g000015 Rmu_sc0000693.1_g000023 Rmu_sc0001044.1_g000005 Rmu_sc0006689.1_g000007 Rmu_sc0012733.1_g000005
rosa_roxburghii Rroxscaffold_3G00230540 Rroxscaffold_3G00230590 Rroxscaffold_3G00230600 Rroxscaffold_3G00230700 Rroxscaffold_3G00230710 Rroxscaffold_3G00232980 Rroxscaffold_3G00237610
rosa_rugosa Rorug07G0203800 Rorug07G0203900 Rorug07G0256100 Rorug07G0256400 Rorug07G0256400 Rorug07G0256400 Rorug07G0256500 Rorug07G0256600 Rorug07G0256600 Rorug07G0257100 Rorug07G0257200 Rorug07G0257300 Rorug07G0257400
rosa_samantha Rh7DG401100 Rh7DG401300 Rh7DG401900 Rh7DG402100 Rh7DG402300 Rh7DG402700
rosa_wichuraiana Rw0G001910 Rw0G001930 Rw0G001940 Rw7G033790 Rw7G033810 Rw7G033840 Rw7G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 138
AciI CCGC 1 cut(s) 890
AclWI GGATC 2 cut(s) 361, 374
AcoI YGGCCR 3 cut(s) 694, 698, 887
AcuI CTGAAG 1 cut(s) 744
AgsI TTSAA 4 cut(s) 193, 238, 565, 789
AjnI CCWGG 1 cut(s) 286
AjuI GAANNNNNNNTTGG 2 cut(s) 953, 985
AluBI AGCT 5 cut(s) 207, 438, 655, 844, 993
AluI AGCT 5 cut(s) 207, 438, 655, 844, 993
Alw26I GTCTC 1 cut(s) 515
AlwI GGATC 2 cut(s) 361, 374
AoxI GGCC 4 cut(s) 195, 694, 698, 887
ApeKI GCWGC 5 cut(s) 110, 649, 652, 823, 841
AseI ATTAAT 2 cut(s) 270, 348
AspLEI GCGC 1 cut(s) 140
AsuC2I CCSGG 1 cut(s) 554
AsuII TTCGAA 1 cut(s) 776
BamHI GGATCC 1 cut(s) 366
BbsI GAAGAC 1 cut(s) 245
BbvCI CCTCAGC 1 cut(s) 357
BbvI GCAGC 5 cut(s) 97, 661, 664, 835, 853
BccI CCATC 4 cut(s) 251, 356, 494, 888
BceAI ACGGC 1 cut(s) 528
BcgI CGANNNNNNTGC 2 cut(s) 619, 653
BciT130I CCWGG 1 cut(s) 288
BclI TGATCA 1 cut(s) 754
BcnI CCSGG 1 cut(s) 554
BcoDI GTCTC 1 cut(s) 515
BfaI CTAG 3 cut(s) 210, 396, 994
BfmI CTRYAG 1 cut(s) 839
BglI GCCNNNNNGGC 1 cut(s) 194
BisI GCNGC 6 cut(s) 111, 650, 653, 824, 842, 890
BlsI GCNGC 6 cut(s) 112, 651, 654, 825, 843, 891
Bme1390I CCNGG 2 cut(s) 288, 554
BmiI GGNNCC 2 cut(s) 368, 558
BmrFI CCNGG 2 cut(s) 288, 554
BmsI GCATC 1 cut(s) 810
BpiI GAAGAC 1 cut(s) 245
Bpu10I CCTNAGC 2 cut(s) 357, 434
Bpu14I TTCGAA 1 cut(s) 776
BpuEI CTTGAG 1 cut(s) 271
BpuMI CCSGG 1 cut(s) 554
BsaJI CCNNGG 1 cut(s) 574
Bse118I RCCGGY 1 cut(s) 696
BseBI CCWGG 1 cut(s) 288
BseDI CCNNGG 1 cut(s) 574
BseGI GGATG 4 cut(s) 10, 367, 628, 715
BseMII CTCAG 2 cut(s) 348, 849
BseRI GAGGAG 2 cut(s) 434, 510
BseXI GCAGC 5 cut(s) 97, 661, 664, 835, 853
BseYI CCCAGC 1 cut(s) 869
BsgI GTGCAG 1 cut(s) 668
Bsh1236I CGCG 1 cut(s) 138
BshFI GGCC 4 cut(s) 197, 696, 700, 889
BsiSI CCGG 2 cut(s) 554, 697
BsmAI GTCTC 1 cut(s) 515
BsmI GAATGC 2 cut(s) 171, 871
BsnI GGCC 4 cut(s) 197, 696, 700, 889
Bsp119I TTCGAA 1 cut(s) 776
Bsp143I GATC 4 cut(s) 366, 754, 802, 835
BspACI CCGC 1 cut(s) 890
BspANI GGCC 4 cut(s) 197, 696, 700, 889
BspCNI CTCAG 2 cut(s) 349, 850
BspFNI CGCG 1 cut(s) 138
BspLI GGNNCC 2 cut(s) 368, 558
BspMAI CTGCAG 1 cut(s) 843
BspPI GGATC 2 cut(s) 361, 374
BspT104I TTCGAA 1 cut(s) 776
BsrFI RCCGGY 1 cut(s) 696
BssAI RCCGGY 1 cut(s) 696
BssECI CCNNGG 1 cut(s) 574
BssMI GATC 4 cut(s) 366, 754, 802, 835
BssT1I CCWWGG 1 cut(s) 574
Bst2UI CCWGG 1 cut(s) 288
Bst4CI ACNGT 1 cut(s) 448
Bst6I CTCTTC 2 cut(s) 411, 759
BstBI TTCGAA 1 cut(s) 776
BstC8I GCNNGC 3 cut(s) 115, 440, 698
BstDEI CTNAG 6 cut(s) 127, 357, 434, 618, 858, 948
BstF5I GGATG 4 cut(s) 10, 367, 628, 715
BstFNI CGCG 1 cut(s) 138
BstHHI GCGC 1 cut(s) 140
BstKTI GATC 4 cut(s) 369, 757, 805, 838
BstMAI GTCTC 1 cut(s) 515
BstMBI GATC 4 cut(s) 366, 754, 802, 835
BstMWI GCNNNNNNNGC 4 cut(s) 177, 194, 549, 823
BstNI CCWGG 1 cut(s) 288
BstSCI CCNGG 2 cut(s) 286, 552
BstSFI CTRYAG 1 cut(s) 839
BstUI CGCG 1 cut(s) 138
BstV1I GCAGC 5 cut(s) 97, 661, 664, 835, 853
BstV2I GAAGAC 1 cut(s) 245
BstX2I RGATCY 1 cut(s) 366
BstYI RGATCY 1 cut(s) 366
BsuRI GGCC 4 cut(s) 197, 696, 700, 889
BtsCI GGATG 4 cut(s) 10, 367, 628, 715
Cac8I GCNNGC 3 cut(s) 115, 440, 698
CfoI GCGC 1 cut(s) 140
Cfr10I RCCGGY 1 cut(s) 696
CseI GACGC 2 cut(s) 144, 815
CviAII CATG 1 cut(s) 371
DdeI CTNAG 6 cut(s) 127, 357, 434, 618, 858, 948
DpnI GATC 4 cut(s) 368, 756, 804, 837
DpnII GATC 4 cut(s) 366, 754, 802, 835
EaeI YGGCCR 3 cut(s) 694, 698, 887
Eam1104I CTCTTC 2 cut(s) 411, 759
EarI CTCTTC 2 cut(s) 411, 759
Eco130I CCWWGG 1 cut(s) 574
Eco57I CTGAAG 1 cut(s) 744
EcoRII CCWGG 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 574
EcoT22I ATGCAT 1 cut(s) 347
ErhI CCWWGG 1 cut(s) 574
FaeI CATG 1 cut(s) 374
FatI CATG 1 cut(s) 370
FbaI TGATCA 1 cut(s) 754
Fnu4HI GCNGC 6 cut(s) 111, 650, 653, 824, 842, 890
FokI GGATG 4 cut(s) 17, 374, 635, 722
FseI GGCCGGCC 1 cut(s) 700
Fsp4HI GCNGC 6 cut(s) 111, 650, 653, 824, 842, 890
FspBI CTAG 3 cut(s) 210, 396, 994
GlaI GCGC 1 cut(s) 139
GluI GCNGC 6 cut(s) 111, 650, 653, 824, 842, 890
GsaI CCCAGC 1 cut(s) 873
HaeIII GGCC 4 cut(s) 197, 696, 700, 889
HapII CCGG 2 cut(s) 554, 697
HgaI GACGC 2 cut(s) 144, 815
HhaI GCGC 1 cut(s) 140
Hin1II CATG 1 cut(s) 374
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HinfI GANTC 1 cut(s) 422
HpaII CCGG 2 cut(s) 554, 697
Hpy166II GTNNAC 1 cut(s) 670
Hpy188I TCNGA 2 cut(s) 29, 316
Hpy188III TCNNGA 3 cut(s) 220, 250, 752
Hpy8I GTNNAC 1 cut(s) 670
Hpy99I CGWCG 1 cut(s) 597
HpyAV CCTTC 4 cut(s) 199, 559, 772, 955
HpyCH4III ACNGT 1 cut(s) 448
HpyCH4V TGCA 7 cut(s) 158, 345, 428, 442, 649, 823, 841
HpyF10VI GCNNNNNNNGC 4 cut(s) 177, 194, 549, 823
HpyF3I CTNAG 6 cut(s) 127, 357, 434, 618, 858, 948
Hsp92II CATG 1 cut(s) 374
HspAI GCGC 1 cut(s) 138
KroI GCCGGC 1 cut(s) 696
KroNI GCCGGC 1 cut(s) 698
Ksp22I TGATCA 1 cut(s) 754
Kzo9I GATC 4 cut(s) 366, 754, 802, 835
LmnI GCTCC 1 cut(s) 556
Lsp1109I GCAGC 5 cut(s) 97, 661, 664, 835, 853
LweI GCATC 1 cut(s) 810
MaeI CTAG 3 cut(s) 210, 396, 994
MaeIII GTNAC 1 cut(s) 217
MalI GATC 4 cut(s) 368, 756, 804, 837
MboI GATC 4 cut(s) 366, 754, 802, 835
MboII GAAGA 7 cut(s) 250, 428, 521, 542, 742, 776, 970
MflI RGATCY 1 cut(s) 366
MluCI AATT 6 cut(s) 233, 267, 301, 333, 349, 852
MlyI GAGTC 1 cut(s) 431
MmeI TCCRAC 1 cut(s) 112
MnlI CCTC 5 cut(s) 352, 412, 488, 627, 760
Mph1103I ATGCAT 1 cut(s) 347
MroNI GCCGGC 1 cut(s) 696
MseI TTAA 5 cut(s) 270, 348, 810, 846, 932
MspI CCGG 2 cut(s) 554, 697
MspR9I CCNGG 2 cut(s) 288, 554
Mva1269I GAATGC 2 cut(s) 171, 871
MvaI CCWGG 1 cut(s) 288
MvnI CGCG 1 cut(s) 138
MwoI GCNNNNNNNGC 4 cut(s) 177, 194, 549, 823
NaeI GCCGGC 1 cut(s) 698
NciI CCSGG 1 cut(s) 554
NdeII GATC 4 cut(s) 366, 754, 802, 835
NgoMIV GCCGGC 1 cut(s) 696
NlaIII CATG 1 cut(s) 374
NlaIV GGNNCC 2 cut(s) 368, 558
NmuCI GTSAC 1 cut(s) 217
NsiI ATGCAT 1 cut(s) 347
NspV TTCGAA 1 cut(s) 776
PctI GAATGC 2 cut(s) 171, 871
PdiI GCCGGC 1 cut(s) 698
PkrI GCNGC 6 cut(s) 112, 651, 654, 825, 843, 891
PleI GAGTC 1 cut(s) 430
PpsI GAGTC 1 cut(s) 430
PshBI ATTAAT 2 cut(s) 270, 348
Psp6I CCWGG 1 cut(s) 286
PspFI CCCAGC 1 cut(s) 869
PspGI CCWGG 1 cut(s) 286
PspN4I GGNNCC 2 cut(s) 368, 558
PsrI GAACNNNNNNTAC 2 cut(s) 391, 423
PstI CTGCAG 1 cut(s) 843
PsuI RGATCY 1 cut(s) 366
RigI GGCCGGCC 1 cut(s) 700
SaqAI TTAA 5 cut(s) 270, 348, 810, 846, 932
SatI GCNGC 6 cut(s) 111, 650, 653, 824, 842, 890
Sau3AI GATC 4 cut(s) 366, 754, 802, 835
SchI GAGTC 1 cut(s) 431
ScrFI CCNGG 2 cut(s) 288, 554
SetI ASST 6 cut(s) 209, 440, 657, 771, 846, 995
SfaNI GCATC 1 cut(s) 810
SfcI CTRYAG 1 cut(s) 839
SfuI TTCGAA 1 cut(s) 776
SmlI CTYRAG 1 cut(s) 250
SmoI CTYRAG 1 cut(s) 250
Sse9I AATT 6 cut(s) 233, 267, 301, 333, 349, 852
SsiI CCGC 1 cut(s) 890
SspMI CTAG 3 cut(s) 210, 396, 994
StyD4I CCNGG 2 cut(s) 286, 552
StyI CCWWGG 1 cut(s) 574
TaaI ACNGT 1 cut(s) 448
TaqI TCGA 6 cut(s) 14, 44, 74, 639, 776, 975
TasI AATT 6 cut(s) 233, 267, 301, 333, 349, 852
TauI GCSGC 1 cut(s) 892
Tru1I TTAA 5 cut(s) 270, 348, 810, 846, 932
Tru9I TTAA 5 cut(s) 270, 348, 810, 846, 932
TseFI GTSAC 1 cut(s) 217
TseI GCWGC 5 cut(s) 110, 649, 652, 823, 841
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 4 cut(s) 639, 758, 878, 971
TspGWI ACGGA 1 cut(s) 722
VspI ATTAAT 2 cut(s) 270, 348
XspI CTAG 3 cut(s) 210, 396, 994
Zsp2I ATGCAT 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.