RchiOBHm_Chr7g0229161
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000615
Physical Location & Seq
Forward (+)
52563296 .. 52565686
2391 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20527

Sequence Viewer

Length: 846 bp
ATGATGGATGGAAGTTCGATTGATGTTGACCAGGAACTTCCCTTTTCTAATGCTGCTCGCACTGTGGTCTTAGTTGGACGCACTGGTAATGGAAAGAGTGCAACAGGCAACAGCATTCTTGGCAAAAATGCCTTCAAGGCCAAGCGTAGCTCTAGTAGGGTCACGACCACTACTGAATTGAAGACTGCTATCTTGAGAGATGGACAACAAATTAATGTTATAGACACTCCTGGTCTTTTTGATAATTCTGCCAAATCAGACTTCATTGGCAAAGAAATTGTCCAAAGCATTAAATTGGCCAAGGATGGAATCCATGCTGTTCTTGTGGTTCTCTCAACTAAAACTCGCTTATCTGAAGAAGAGGAGTCTGCAATCCGTAGCTTGGAAACTCTATTTGGAAGTAAAATCTTTGACTATATGATTGTTGTCTTTACGGGAGGAGATGAGTTGGAAGAAAATGATCAGACTTTGGAAGATTATTTGGGCCGTGATTGCCCGGTGCCTTTGAAGGAAATCCTTGGTCTGTGTGGAAATCGTTGTGTGCTTTTTGATAACAAGACTAAGGATGAAAGCAAGAGGGTCGAACAAGTGCAGCAGCTTCTCTCGCTTGTAAACTCGGTTATAGCACAGAATGGTGGGCGCCCATACACGGATGAGATATTTGCTGAAGTTAAGAAAGGGGCTATGGAACTTAGTGATCAACAAGAAGGGGTTGCTTCTTTGAAGGGGTATTCAAAACAAGAAATATCTCATTTGAATGAGCAGATACAGCTTGCACATGATCAGCAGCTTAAACAAATTACTGAGATGGTATATTTTCATCTGCATTTTGTTTGCATCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

281

Amino Acids

31.05

Weight (kDa)

5.18

Isoelectric Point (pI)

38.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIG1 PF04548 20 - 234 1.6e-79 AIG1 family
MMR_HSR1 PF01926 21 - 128 1.3e-11 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000615)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33970 AT1G33970 AT1G33970 AT1G33970 AT1G33970
fragaria_vesca FvH4_5g32530 FvH4_5g32530
malus_domestica MD15G1403700.v1.1
prunus_persica Prupe.1G549700_v2.0.a1 Prupe.1G549700_v2.0.a1
pyrus_communis pycom15g36100
rosa_chinensis RchiOBHm_Chr7g0226331 RchiOBHm_Chr7g0229101 RchiOBHm_Chr7g0229111 RchiOBHm_Chr7g0229141 RchiOBHm_Chr7g0229161 RchiOBHm_Chr7g0229171 RchiOBHm_Chr7g0229211 RchiOBHm_Chr7g0229241 RchiOBHm_Chr7g0229381 RchiOBHm_Chr7g0229761 RchiOBHm_Chr7g0229911
rosa_laevigata RLG00000000796 RLG00000001464 RLG00000001466 RLG00000001469 RLG00000001523 RLG00000001526 RLG00000001529 RLG00000001530 RLG00000001749 RLG00000001913 RLG00000002114 RLG00000002115 RLG00000023248 RLG00000023250
rosa_multiflora Rmu_co8281135.1_g000001 Rmu_sc0000271.1_g000002 Rmu_sc0000271.1_g000007 Rmu_sc0000271.1_g000014 Rmu_sc0000693.1_g000012 Rmu_sc0000693.1_g000015 Rmu_sc0000693.1_g000023 Rmu_sc0001044.1_g000005 Rmu_sc0006689.1_g000007 Rmu_sc0012733.1_g000005
rosa_roxburghii Rroxscaffold_3G00230540 Rroxscaffold_3G00230590 Rroxscaffold_3G00230600 Rroxscaffold_3G00230700 Rroxscaffold_3G00230710 Rroxscaffold_3G00232980 Rroxscaffold_3G00237610
rosa_rugosa Rorug07G0203800 Rorug07G0203900 Rorug07G0256100 Rorug07G0256400 Rorug07G0256400 Rorug07G0256400 Rorug07G0256500 Rorug07G0256600 Rorug07G0256600 Rorug07G0257100 Rorug07G0257200 Rorug07G0257300 Rorug07G0257400
rosa_samantha Rh7DG401100 Rh7DG401300 Rh7DG401900 Rh7DG402100 Rh7DG402300 Rh7DG402700
rosa_wichuraiana Rw0G001910 Rw0G001930 Rw0G001940 Rw7G033790 Rw7G033810 Rw7G033840 Rw7G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 499, 639
AcoI YGGCCR 1 cut(s) 297
AcuI CTGAAG 2 cut(s) 375, 687
AcyI GRCGYC 1 cut(s) 640
AfiI CCNNNNNNNGG 2 cut(s) 382, 649
AgsI TTSAA 6 cut(s) 136, 181, 508, 724, 735, 757
AjnI CCWGG 2 cut(s) 30, 229
AjuI GAANNNNNNNTTGG 4 cut(s) 245, 277, 378, 410
AluBI AGCT 5 cut(s) 150, 381, 598, 772, 790
AluI AGCT 5 cut(s) 150, 381, 598, 772, 790
AoxI GGCC 3 cut(s) 138, 297, 484
ApeKI GCWGC 4 cut(s) 53, 592, 595, 787
ArsI GACNNNNNNTTYG 2 cut(s) 264, 296
AseI ATTAAT 1 cut(s) 213
AspLEI GCGC 1 cut(s) 642
AspS9I GGNCC 1 cut(s) 484
AsuC2I CCSGG 1 cut(s) 497
BalI TGGCCA 1 cut(s) 299
BanI GGYRCC 2 cut(s) 499, 639
BbsI GAAGAC 1 cut(s) 188
BbvI GCAGC 4 cut(s) 40, 604, 607, 799
BccI CCATC 4 cut(s) 2, 194, 299, 802
BceAI ACGGC 1 cut(s) 471
BcgI CGANNNNNNTGC 2 cut(s) 562, 596
BciT130I CCWGG 2 cut(s) 32, 231
BclI TGATCA 3 cut(s) 460, 697, 781
BcnI CCSGG 1 cut(s) 497
BfaI CTAG 1 cut(s) 153
BfoI RGCGCY 1 cut(s) 643
BglI GCCNNNNNGGC 1 cut(s) 137
BisI GCNGC 4 cut(s) 54, 593, 596, 788
BlsI GCNGC 4 cut(s) 55, 594, 597, 789
Bme1390I CCNGG 3 cut(s) 32, 231, 497
BmgT120I GGNCC 1 cut(s) 484
BmiI GGNNCC 2 cut(s) 501, 641
BmrFI CCNGG 3 cut(s) 32, 231, 497
BpiI GAAGAC 1 cut(s) 188
BpuEI CTTGAG 1 cut(s) 214
BpuMI CCSGG 1 cut(s) 497
BsaHI GRCGYC 1 cut(s) 640
BsaJI CCNNGG 2 cut(s) 300, 517
Bsc4I CCNNNNNNNGG 2 cut(s) 382, 649
Bse1I ACTGG 1 cut(s) 88
BseBI CCWGG 2 cut(s) 32, 231
BseDI CCNNGG 2 cut(s) 300, 517
BseGI GGATG 5 cut(s) 13, 310, 571, 658, 837
BseLI CCNNNNNNNGG 2 cut(s) 382, 649
BseMII CTCAG 1 cut(s) 795
BseNI ACTGG 1 cut(s) 88
BseRI GAGGAG 2 cut(s) 377, 453
BseXI GCAGC 4 cut(s) 40, 604, 607, 799
BsgI GTGCAG 1 cut(s) 611
BshFI GGCC 3 cut(s) 140, 299, 486
BshNI GGYRCC 2 cut(s) 499, 639
BsiSI CCGG 1 cut(s) 497
BslI CCNNNNNNNGG 2 cut(s) 382, 649
BsmI GAATGC 1 cut(s) 114
BsnI GGCC 3 cut(s) 140, 299, 486
Bsp143I GATC 3 cut(s) 460, 697, 781
BspANI GGCC 3 cut(s) 140, 299, 486
BspCNI CTCAG 1 cut(s) 796
BspLI GGNNCC 2 cut(s) 501, 641
BspT107I GGYRCC 2 cut(s) 499, 639
BsrI ACTGG 1 cut(s) 88
BssECI CCNNGG 2 cut(s) 300, 517
BssMI GATC 3 cut(s) 460, 697, 781
BssNI GRCGYC 1 cut(s) 640
BssT1I CCWWGG 2 cut(s) 300, 517
Bst2UI CCWGG 2 cut(s) 32, 231
Bst4CI ACNGT 1 cut(s) 64
Bst6I CTCTTC 1 cut(s) 354
BstACI GRCGYC 1 cut(s) 640
BstC8I GCNNGC 2 cut(s) 58, 774
BstDEI CTNAG 4 cut(s) 70, 561, 692, 804
BstF5I GGATG 5 cut(s) 13, 310, 571, 658, 837
BstH2I RGCGCY 1 cut(s) 643
BstHHI GCGC 1 cut(s) 642
BstKTI GATC 3 cut(s) 463, 700, 784
BstMBI GATC 3 cut(s) 460, 697, 781
BstMWI GCNNNNNNNGC 5 cut(s) 120, 137, 492, 604, 769
BstNI CCWGG 2 cut(s) 32, 231
BstSCI CCNGG 3 cut(s) 30, 229, 495
BstV1I GCAGC 4 cut(s) 40, 604, 607, 799
BstV2I GAAGAC 1 cut(s) 188
BsuRI GGCC 3 cut(s) 140, 299, 486
BtsCI GGATG 5 cut(s) 13, 310, 571, 658, 837
BtsIMutI CAGTG 2 cut(s) 60, 81
Cac8I GCNNGC 2 cut(s) 58, 774
CfoI GCGC 1 cut(s) 642
Cfr13I GGNCC 1 cut(s) 484
CseI GACGC 1 cut(s) 87
CviAII CATG 2 cut(s) 314, 779
CviJI RGCY 9 cut(s) 140, 150, 299, 381, 486, 598, 683, 772, 790
CviKI_1 RGCY 9 cut(s) 140, 150, 299, 381, 486, 598, 683, 772, 790
DdeI CTNAG 4 cut(s) 70, 561, 692, 804
DinI GGCGCC 1 cut(s) 641
DpnI GATC 3 cut(s) 462, 699, 783
DpnII GATC 3 cut(s) 460, 697, 781
EaeI YGGCCR 1 cut(s) 297
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
Eco130I CCWWGG 2 cut(s) 300, 517
Eco57I CTGAAG 2 cut(s) 375, 687
EcoRII CCWGG 2 cut(s) 30, 229
EcoT14I CCWWGG 2 cut(s) 300, 517
EgeI GGCGCC 1 cut(s) 641
EheI GGCGCC 1 cut(s) 641
ErhI CCWWGG 2 cut(s) 300, 517
FaeI CATG 2 cut(s) 317, 782
FaiI YATR 9 cut(s) 221, 315, 417, 419, 623, 646, 686, 780, 814
FatI CATG 2 cut(s) 313, 778
FbaI TGATCA 3 cut(s) 460, 697, 781
Fnu4HI GCNGC 4 cut(s) 54, 593, 596, 788
FokI GGATG 5 cut(s) 20, 317, 578, 665, 824
Fsp4HI GCNGC 4 cut(s) 54, 593, 596, 788
FspBI CTAG 1 cut(s) 153
GlaI GCGC 1 cut(s) 641
GluI GCNGC 4 cut(s) 54, 593, 596, 788
HaeII RGCGCY 1 cut(s) 643
HaeIII GGCC 3 cut(s) 140, 299, 486
HapII CCGG 1 cut(s) 497
HgaI GACGC 1 cut(s) 87
HhaI GCGC 1 cut(s) 642
Hin1I GRCGYC 1 cut(s) 640
Hin1II CATG 2 cut(s) 317, 782
Hin6I GCGC 1 cut(s) 640
HinP1I GCGC 1 cut(s) 640
HincII GTYRAC 1 cut(s) 28
HindII GTYRAC 1 cut(s) 28
HinfI GANTC 2 cut(s) 309, 365
HpaII CCGG 1 cut(s) 497
Hpy166II GTNNAC 2 cut(s) 28, 613
Hpy188I TCNGA 3 cut(s) 259, 355, 465
Hpy188III TCNNGA 2 cut(s) 163, 193
Hpy8I GTNNAC 2 cut(s) 28, 613
HpyAV CCTTC 4 cut(s) 142, 502, 701, 718
HpyCH4III ACNGT 1 cut(s) 64
HpyCH4V TGCA 6 cut(s) 101, 371, 592, 776, 826, 837
HpyF10VI GCNNNNNNNGC 5 cut(s) 120, 137, 492, 604, 769
HpyF3I CTNAG 4 cut(s) 70, 561, 692, 804
Hsp92I GRCGYC 1 cut(s) 640
Hsp92II CATG 2 cut(s) 317, 782
HspAI GCGC 1 cut(s) 640
KasI GGCGCC 1 cut(s) 639
Ksp22I TGATCA 3 cut(s) 460, 697, 781
Kzo9I GATC 3 cut(s) 460, 697, 781
LpnPI CCDG 7 cut(s) 17, 44, 69, 90, 216, 243, 510
Lsp1109I GCAGC 4 cut(s) 40, 604, 607, 799
MaeI CTAG 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 160
MalI GATC 3 cut(s) 462, 699, 783
MboI GATC 3 cut(s) 460, 697, 781
MboII GAAGA 5 cut(s) 193, 368, 371, 464, 485
MlsI TGGCCA 1 cut(s) 299
MluCI AATT 6 cut(s) 176, 210, 244, 276, 293, 798
MluNI TGGCCA 1 cut(s) 299
Mly113I GGCGCC 1 cut(s) 640
MlyI GAGTC 1 cut(s) 374
MmeI TCCRAC 2 cut(s) 55, 429
MnlI CCTC 3 cut(s) 355, 431, 570
Mox20I TGGCCA 1 cut(s) 299
MscI TGGCCA 1 cut(s) 299
MseI TTAA 4 cut(s) 213, 291, 672, 792
MslI CAYNNNNRTG 1 cut(s) 756
Msp20I TGGCCA 1 cut(s) 299
MspI CCGG 1 cut(s) 497
MspR9I CCNGG 3 cut(s) 32, 231, 497
Mva1269I GAATGC 1 cut(s) 114
MvaI CCWGG 2 cut(s) 32, 231
MwoI GCNNNNNNNGC 5 cut(s) 120, 137, 492, 604, 769
NarI GGCGCC 1 cut(s) 640
NciI CCSGG 1 cut(s) 497
NdeII GATC 3 cut(s) 460, 697, 781
NlaIII CATG 2 cut(s) 317, 782
NlaIV GGNNCC 2 cut(s) 501, 641
NmuCI GTSAC 1 cut(s) 160
PctI GAATGC 1 cut(s) 114
PfeI GAWTC 1 cut(s) 309
PkrI GCNGC 4 cut(s) 55, 594, 597, 789
PleI GAGTC 1 cut(s) 373
PluTI GGCGCC 1 cut(s) 643
PpsI GAGTC 1 cut(s) 373
PshBI ATTAAT 1 cut(s) 213
Psp6I CCWGG 2 cut(s) 30, 229
PspGI CCWGG 2 cut(s) 30, 229
PspN4I GGNNCC 2 cut(s) 501, 641
PspPI GGNCC 1 cut(s) 484
RseI CAYNNNNRTG 1 cut(s) 756
SaqAI TTAA 4 cut(s) 213, 291, 672, 792
SatI GCNGC 4 cut(s) 54, 593, 596, 788
Sau3AI GATC 3 cut(s) 460, 697, 781
Sau96I GGNCC 1 cut(s) 484
SchI GAGTC 1 cut(s) 374
ScrFI CCNGG 3 cut(s) 32, 231, 497
SetI ASST 5 cut(s) 152, 383, 600, 774, 792
SfoI GGCGCC 1 cut(s) 641
SmiMI CAYNNNNRTG 1 cut(s) 756
SmlI CTYRAG 1 cut(s) 193
SmoI CTYRAG 1 cut(s) 193
Sse9I AATT 6 cut(s) 176, 210, 244, 276, 293, 798
SspDI GGCGCC 1 cut(s) 639
SspMI CTAG 1 cut(s) 153
StyD4I CCNGG 3 cut(s) 30, 229, 495
StyI CCWWGG 2 cut(s) 300, 517
TaaI ACNGT 1 cut(s) 64
TaqI TCGA 2 cut(s) 17, 582
TasI AATT 6 cut(s) 176, 210, 244, 276, 293, 798
TfiI GAWTC 1 cut(s) 309
Tru1I TTAA 4 cut(s) 213, 291, 672, 792
Tru9I TTAA 4 cut(s) 213, 291, 672, 792
TscAI CASTG 2 cut(s) 67, 88
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 4 cut(s) 53, 592, 595, 787
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 3 cut(s) 253, 582, 809
TspGWI ACGGA 2 cut(s) 365, 665
TspRI CASTG 2 cut(s) 67, 88
VspI ATTAAT 1 cut(s) 213
XspI CTAG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.