Rh7DG402700
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000615
Physical Location & Seq
Forward (+)
55520114 .. 55522772
2659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG402700.1

Sequence Viewer

Length: 990 bp
ATGGGTGGACGTTTGATTGATGTTAACCAGGAACTTCCCTTTTCTAATGCTGCTCGCACTGTGGTCTTAGTTGGACGCACTGGTAATGGAAAAAGTGCAACAGGCAACAGCATTCTTGGCAAAAACGCCTTCAAGGCCAAGCGTAGCTCTAGTGGTGTCACGACCACTACTGAATTGAAGACTGCCATCTTGAGAGATGGACAACAAATTAATGTTATAGACACTCCTGGTCTTTTTGATAATTCTGCCAAATCAGACTTTATTAGCAAAGAAATTGCCAAATGCATTACATTGGCCGAGGATGGAATCCATGGTGTTCTTGTGGTTCTCTCAACTAGAACTCGCTTTACAAAAGAAGAAGAGTCTGCAATCCGTAGCTTGGAAACTCTATTTGGAAGTAAAATCTTTGACTATATGATTGTTGTCTTTACGGGAGGAGATGAGCTTGAAGAAGATGAGACTTTGGAAGATTATTTGGGCCGTGATTGCCCGGAGCATTTGAAGGAAATCCTTGGTCTCTGTGGAAATCGCTGTGTGCTTTTTGATAACAAGTCTAAGGATGAAAGCAAGAGGGTTGAACAAGTGCAGCGGCTTCTCTCGCTTGTAAACTTGGTTATAGCTCAGAATGGTGGGAGGCCATACACAGATGAGATATTTGCTGAAGTGAAGAAATTTCGTGATCAACAAGAAGAGGTTGCTTCGAAGGGGTATTCAAAACAAGAAATATCTCGTTTGAATGAGCAGATACAGCTTGCACATGATCAGCAGCTTAAACAAATTACTGAGATGATTGATTTAAAGATGAAAGAGAAAACCATGATGCTTGAACAAAAGTTAGCAGATGAACGTGCTGCACGACTAAGAGCAGAAGAGACTACCCAAGAGGCTCAACAAAGGTCTGAGGATGTAATCCGAAAGATTAGAAACGATCTTGCAAACACGCCTGAGCCTAAGCAGCCAAAATGCACGGAGAAGTGTGCTATTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

329

Amino Acids

36.89

Weight (kDa)

5.58

Isoelectric Point (pI)

43.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIG1 PF04548 19 - 228 8.7e-81 AIG1 family
MMR_HSR1 PF01926 20 - 127 7.9e-11 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000615)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33970 AT1G33970 AT1G33970 AT1G33970 AT1G33970
fragaria_vesca FvH4_5g32530 FvH4_5g32530
malus_domestica MD15G1403700.v1.1
prunus_persica Prupe.1G549700_v2.0.a1 Prupe.1G549700_v2.0.a1
pyrus_communis pycom15g36100
rosa_chinensis RchiOBHm_Chr7g0226331 RchiOBHm_Chr7g0229101 RchiOBHm_Chr7g0229111 RchiOBHm_Chr7g0229141 RchiOBHm_Chr7g0229161 RchiOBHm_Chr7g0229171 RchiOBHm_Chr7g0229211 RchiOBHm_Chr7g0229241 RchiOBHm_Chr7g0229381 RchiOBHm_Chr7g0229761 RchiOBHm_Chr7g0229911
rosa_laevigata RLG00000000796 RLG00000001464 RLG00000001466 RLG00000001469 RLG00000001523 RLG00000001526 RLG00000001529 RLG00000001530 RLG00000001749 RLG00000001913 RLG00000002114 RLG00000002115 RLG00000023248 RLG00000023250
rosa_multiflora Rmu_co8281135.1_g000001 Rmu_sc0000271.1_g000002 Rmu_sc0000271.1_g000007 Rmu_sc0000271.1_g000014 Rmu_sc0000693.1_g000012 Rmu_sc0000693.1_g000015 Rmu_sc0000693.1_g000023 Rmu_sc0001044.1_g000005 Rmu_sc0006689.1_g000007 Rmu_sc0012733.1_g000005
rosa_roxburghii Rroxscaffold_3G00230540 Rroxscaffold_3G00230590 Rroxscaffold_3G00230600 Rroxscaffold_3G00230700 Rroxscaffold_3G00230710 Rroxscaffold_3G00232980 Rroxscaffold_3G00237610
rosa_rugosa Rorug07G0203800 Rorug07G0203900 Rorug07G0256100 Rorug07G0256400 Rorug07G0256400 Rorug07G0256400 Rorug07G0256500 Rorug07G0256600 Rorug07G0256600 Rorug07G0257100 Rorug07G0257200 Rorug07G0257300 Rorug07G0257400
rosa_samantha Rh7DG401100 Rh7DG401300 Rh7DG401900 Rh7DG402100 Rh7DG402300 Rh7DG402700
rosa_wichuraiana Rw0G001910 Rw0G001930 Rw0G001940 Rw7G033790 Rw7G033810 Rw7G033840 Rw7G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 589
AcoI YGGCCR 1 cut(s) 294
AcsI RAATTY 1 cut(s) 671
AcuI CTGAAG 1 cut(s) 681
AfiI CCNNNNNNNGG 1 cut(s) 379
AgsI TTSAA 8 cut(s) 133, 178, 449, 502, 578, 714, 736, 827
AjnI CCWGG 2 cut(s) 27, 226
AjuI GAANNNNNNNTTGG 2 cut(s) 375, 407
AluBI AGCT 6 cut(s) 147, 378, 445, 620, 751, 769
AluI AGCT 6 cut(s) 147, 378, 445, 620, 751, 769
Alw26I GTCTC 3 cut(s) 452, 521, 866
AoxI GGCC 4 cut(s) 135, 294, 478, 635
ApeKI GCWGC 5 cut(s) 50, 586, 766, 851, 955
ApoI RAATTY 1 cut(s) 671
AseI ATTAAT 1 cut(s) 210
AspS9I GGNCC 1 cut(s) 478
AsuC2I CCSGG 1 cut(s) 491
AsuII TTCGAA 1 cut(s) 701
BbsI GAAGAC 1 cut(s) 185
BbvI GCAGC 5 cut(s) 37, 598, 778, 838, 967
BccI CCATC 3 cut(s) 191, 194, 296
BceAI ACGGC 1 cut(s) 465
BciT130I CCWGG 2 cut(s) 29, 228
BclI TGATCA 2 cut(s) 679, 760
BcnI CCSGG 1 cut(s) 491
BcoDI GTCTC 3 cut(s) 452, 521, 866
BfaI CTAG 2 cut(s) 150, 336
BglI GCCNNNNNGGC 1 cut(s) 134
BisI GCNGC 6 cut(s) 51, 587, 590, 767, 852, 956
BlsI GCNGC 6 cut(s) 52, 588, 591, 768, 853, 957
Bme1390I CCNGG 3 cut(s) 29, 228, 491
BmgT120I GGNCC 1 cut(s) 478
BmrFI CCNGG 3 cut(s) 29, 228, 491
BmsI GCATC 1 cut(s) 810
BpiI GAAGAC 1 cut(s) 185
Bpu10I CCTNAGC 2 cut(s) 945, 951
Bpu14I TTCGAA 1 cut(s) 701
BpuEI CTTGAG 1 cut(s) 211
BpuMI CCSGG 1 cut(s) 491
BsaI GGTCTC 1 cut(s) 521
BsaJI CCNNGG 3 cut(s) 297, 310, 511
Bsc4I CCNNNNNNNGG 1 cut(s) 379
Bse1I ACTGG 1 cut(s) 85
BseBI CCWGG 2 cut(s) 29, 228
BseDI CCNNGG 3 cut(s) 297, 310, 511
BseGI GGATG 3 cut(s) 307, 565, 910
BseLI CCNNNNNNNGG 1 cut(s) 379
BseMII CTCAG 4 cut(s) 635, 774, 891, 936
BseNI ACTGG 1 cut(s) 85
BseRI GAGGAG 1 cut(s) 450
BseXI GCAGC 5 cut(s) 37, 598, 778, 838, 967
BsgI GTGCAG 2 cut(s) 605, 837
BshFI GGCC 4 cut(s) 137, 296, 480, 637
BsiSI CCGG 1 cut(s) 491
BslI CCNNNNNNNGG 1 cut(s) 379
BsmAI GTCTC 3 cut(s) 452, 521, 866
BsmI GAATGC 1 cut(s) 111
BsnI GGCC 4 cut(s) 137, 296, 480, 637
Bso31I GGTCTC 1 cut(s) 521
Bsp119I TTCGAA 1 cut(s) 701
Bsp143I GATC 3 cut(s) 679, 760, 928
Bsp19I CCATGG 1 cut(s) 310
BspACI CCGC 1 cut(s) 589
BspANI GGCC 4 cut(s) 137, 296, 480, 637
BspCNI CTCAG 4 cut(s) 634, 775, 892, 937
BspT104I TTCGAA 1 cut(s) 701
BspTNI GGTCTC 1 cut(s) 521
BsrI ACTGG 1 cut(s) 85
BssECI CCNNGG 3 cut(s) 297, 310, 511
BssMI GATC 3 cut(s) 679, 760, 928
BssT1I CCWWGG 2 cut(s) 310, 511
Bst2UI CCWGG 2 cut(s) 29, 228
Bst4CI ACNGT 1 cut(s) 61
Bst6I CTCTTC 3 cut(s) 354, 684, 864
BstBI TTCGAA 1 cut(s) 701
BstC8I GCNNGC 2 cut(s) 55, 753
BstDEI CTNAG 8 cut(s) 67, 555, 621, 783, 860, 900, 945, 951
BstDSI CCRYGG 1 cut(s) 310
BstF5I GGATG 3 cut(s) 307, 565, 910
BstKTI GATC 3 cut(s) 682, 763, 931
BstMAI GTCTC 3 cut(s) 452, 521, 866
BstMBI GATC 3 cut(s) 679, 760, 928
BstMWI GCNNNNNNNGC 6 cut(s) 117, 134, 486, 598, 748, 955
BstNI CCWGG 2 cut(s) 29, 228
BstSCI CCNGG 3 cut(s) 27, 226, 489
BstV1I GCAGC 5 cut(s) 37, 598, 778, 838, 967
BstV2I GAAGAC 1 cut(s) 185
BsuRI GGCC 4 cut(s) 137, 296, 480, 637
BtgI CCRYGG 1 cut(s) 310
BtsCI GGATG 3 cut(s) 307, 565, 910
BtsIMutI CAGTG 2 cut(s) 57, 78
Cac8I GCNNGC 2 cut(s) 55, 753
Cfr13I GGNCC 1 cut(s) 478
CseI GACGC 1 cut(s) 84
CviAII CATG 3 cut(s) 311, 758, 817
DdeI CTNAG 8 cut(s) 67, 555, 621, 783, 860, 900, 945, 951
DpnI GATC 3 cut(s) 681, 762, 930
DpnII GATC 3 cut(s) 679, 760, 928
DraI TTTAAA 1 cut(s) 798
EaeI YGGCCR 1 cut(s) 294
Eam1104I CTCTTC 3 cut(s) 354, 684, 864
EarI CTCTTC 3 cut(s) 354, 684, 864
Eco130I CCWWGG 2 cut(s) 310, 511
Eco31I GGTCTC 1 cut(s) 521
Eco57I CTGAAG 1 cut(s) 681
EcoRII CCWGG 2 cut(s) 27, 226
EcoT14I CCWWGG 2 cut(s) 310, 511
EcoT22I ATGCAT 1 cut(s) 287
ErhI CCWWGG 2 cut(s) 310, 511
FaeI CATG 3 cut(s) 314, 761, 820
FaiI YATR 9 cut(s) 218, 312, 414, 416, 617, 640, 759, 818, 986
FatI CATG 3 cut(s) 310, 757, 816
FbaI TGATCA 2 cut(s) 679, 760
Fnu4HI GCNGC 6 cut(s) 51, 587, 590, 767, 852, 956
FokI GGATG 3 cut(s) 314, 572, 917
Fsp4HI GCNGC 6 cut(s) 51, 587, 590, 767, 852, 956
FspBI CTAG 2 cut(s) 150, 336
GluI GCNGC 6 cut(s) 51, 587, 590, 767, 852, 956
HaeIII GGCC 4 cut(s) 137, 296, 480, 637
HapII CCGG 1 cut(s) 491
HgaI GACGC 1 cut(s) 84
Hin1II CATG 3 cut(s) 314, 761, 820
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 2 cut(s) 306, 362
HpaI GTTAAC 1 cut(s) 25
HpaII CCGG 1 cut(s) 491
Hpy166II GTNNAC 3 cut(s) 8, 25, 607
Hpy188I TCNGA 4 cut(s) 256, 624, 901, 914
Hpy188III TCNNGA 3 cut(s) 160, 190, 677
Hpy8I GTNNAC 3 cut(s) 8, 25, 607
HpyAV CCTTC 3 cut(s) 139, 496, 697
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4IV ACGT 2 cut(s) 10, 847
HpyCH4V TGCA 8 cut(s) 98, 285, 368, 586, 755, 854, 935, 966
HpyF10VI GCNNNNNNNGC 6 cut(s) 117, 134, 486, 598, 748, 955
HpyF3I CTNAG 8 cut(s) 67, 555, 621, 783, 860, 900, 945, 951
HpySE526I ACGT 2 cut(s) 10, 847
Hsp92II CATG 3 cut(s) 314, 761, 820
Ksp22I TGATCA 2 cut(s) 679, 760
KspAI GTTAAC 1 cut(s) 25
Kzo9I GATC 3 cut(s) 679, 760, 928
LmnI GCTCC 1 cut(s) 493
LpnPI CCDG 8 cut(s) 14, 41, 66, 87, 213, 240, 504, 957
Lsp1109I GCAGC 5 cut(s) 37, 598, 778, 838, 967
LweI GCATC 1 cut(s) 810
MaeI CTAG 2 cut(s) 150, 336
MaeII ACGT 2 cut(s) 10, 847
MaeIII GTNAC 1 cut(s) 157
MalI GATC 3 cut(s) 681, 762, 930
MboI GATC 3 cut(s) 679, 760, 928
MboII GAAGA 9 cut(s) 190, 368, 371, 461, 464, 479, 679, 701, 881
MluCI AATT 6 cut(s) 173, 207, 241, 273, 671, 777
MlyI GAGTC 1 cut(s) 371
MmeI TCCRAC 1 cut(s) 52
MnlI CCTC 7 cut(s) 292, 428, 564, 627, 685, 877, 895
Mph1103I ATGCAT 1 cut(s) 287
MseI TTAA 4 cut(s) 24, 210, 771, 797
MspA1I CMGCKG 1 cut(s) 589
MspI CCGG 1 cut(s) 491
MspR9I CCNGG 3 cut(s) 29, 228, 491
Mva1269I GAATGC 1 cut(s) 111
MvaI CCWGG 2 cut(s) 29, 228
MwoI GCNNNNNNNGC 6 cut(s) 117, 134, 486, 598, 748, 955
NciI CCSGG 1 cut(s) 491
NcoI CCATGG 1 cut(s) 310
NdeII GATC 3 cut(s) 679, 760, 928
NlaIII CATG 3 cut(s) 314, 761, 820
NmeAIII GCCGAG 1 cut(s) 322
NmuCI GTSAC 1 cut(s) 157
NsiI ATGCAT 1 cut(s) 287
NspV TTCGAA 1 cut(s) 701
PcsI WCGNNNNNNNCGW 1 cut(s) 853
PctI GAATGC 1 cut(s) 111
PfeI GAWTC 1 cut(s) 306
PkrI GCNGC 6 cut(s) 52, 588, 591, 768, 853, 957
PleI GAGTC 1 cut(s) 370
PpsI GAGTC 1 cut(s) 370
PshBI ATTAAT 1 cut(s) 210
Psp6I CCWGG 2 cut(s) 27, 226
PspGI CCWGG 2 cut(s) 27, 226
PspPI GGNCC 1 cut(s) 478
PsrI GAACNNNNNNTAC 2 cut(s) 331, 363
SaqAI TTAA 4 cut(s) 24, 210, 771, 797
SatI GCNGC 6 cut(s) 51, 587, 590, 767, 852, 956
Sau3AI GATC 3 cut(s) 679, 760, 928
Sau96I GGNCC 1 cut(s) 478
SchI GAGTC 1 cut(s) 371
ScrFI CCNGG 3 cut(s) 29, 228, 491
SfaNI GCATC 1 cut(s) 810
SfuI TTCGAA 1 cut(s) 701
SmlI CTYRAG 1 cut(s) 190
SmoI CTYRAG 1 cut(s) 190
Sse9I AATT 6 cut(s) 173, 207, 241, 273, 671, 777
SsiI CCGC 1 cut(s) 589
SspMI CTAG 2 cut(s) 150, 336
StyD4I CCNGG 3 cut(s) 27, 226, 489
StyI CCWWGG 2 cut(s) 310, 511
TaaI ACNGT 1 cut(s) 61
TaiI ACGT 2 cut(s) 13, 850
TaqI TCGA 1 cut(s) 701
TasI AATT 6 cut(s) 173, 207, 241, 273, 671, 777
TauI GCSGC 1 cut(s) 592
TfiI GAWTC 1 cut(s) 306
Tru1I TTAA 4 cut(s) 24, 210, 771, 797
Tru9I TTAA 4 cut(s) 24, 210, 771, 797
TscAI CASTG 2 cut(s) 64, 85
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 5 cut(s) 50, 586, 766, 851, 955
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 3 cut(s) 576, 818, 858
TspGWI ACGGA 2 cut(s) 362, 983
TspRI CASTG 2 cut(s) 64, 85
VspI ATTAAT 1 cut(s) 210
XapI RAATTY 1 cut(s) 671
XspI CTAG 2 cut(s) 150, 336
Zsp2I ATGCAT 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.