Rroxscaffold_3G00230700
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000615
Physical Location & Seq
Reverse (-)
15602784 .. 15606055
3272 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00230700.1

Sequence Viewer

Length: 1194 bp
ATGGATGGAAGTTCGATTGATGTTGTCAGGGAAATTCCCATTTCGATTGATGTTGTCAGGGAACTTCCCATTTCGATTGATGCTCGCACTTTGGTCTTAGTTGGACTCGCTGGTAATGGAAAAAGTGCAACAGGCAACAGCATTCTTGGCAAAAACGCCTTCAAGACCAAGCATAGCTCTCGTGACACCACGACCACTACTGAATTGAAGACTGCTATCTTGAGAGATGGACAACAAATTAATGTTATAGACACTCCTGGTATTTTTGATAATTCTGCCAAATCAGACTTTATTGGCAAAGAAATTGCCCAATGCATTAATTTGGCTGAGGATGGGATCCATGCTGTTCTTGTGGTACTCTCAACTAGAACTCGCTTTACAAAAGAAGAGGAGTCTGCAATCCTTAGCTTGCAAACTGTATTTGGAAGTAAAATCATTGACTATATGATTGTTGTCTTTACGGGAGGAGATGACTTGGAAGAAAATGATGAGACTTTGGAAGATTATTTGAGCCATGATTGCCCAGAGCCTTTGAAGGAAATCCTTGGTCTGTGTGGAAATCGTCGTGTGCTTTTTGATAACAAGACTAAGGATGAAAGCAAGAGGGTCGAACAAGTGCAGCAACTTCTTTTGCTTGTAAACTCGGTTATAGCACAGAATGGTGGCCGGCCATACACGGATGAGAGATTTGCTGAAGTGAAGAAAGGGGCTATGAAACTTCGTGATCAACAAGAAGAGGTTGCTTCGAAGGGGTATTTGAAACGAGAAATATCTCTTTTGAATGAGCAGATGCAGAGTCAACATGATCTGCTGCTTAAACAAATTGCCGAGATGGTTGAGCTAAAGATGAGAGAGAAAACCATGATGCTTGAACAAAAGTTAGCAGATGAACATGTTGCACGACTAAGAGAAGAAAAGACTGCCCAAGAGGCTCAACAAGGGTCTGAGGATGAAATCCGAAAGCTTAGAGATGATCTACAAGCAGAGATGTGGAAAAGAGCCGAAGAGACTGCCCAAGAGGCTCAACAAAGGTCCGAGGATGAAATCCGAAAGCTTAGCGACGATCGCAAGCGGAGATACCGAAAAGAGCCGAAGAGACTACGAGAGATGAGGAAAAAAGCCAAAGAGAGTGCCCAAGAGGCTCAACAAAGGTCTAAGGATGAAATTCGAAAGCTTAGAGACGATCGCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

397

Amino Acids

45.34

Weight (kDa)

5.72

Isoelectric Point (pI)

45.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIG1 PF04548 30 - 243 1.6e-78 AIG1 family
MMR_HSR1 PF01926 31 - 133 2.1e-09 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000615)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33970 AT1G33970 AT1G33970 AT1G33970 AT1G33970
fragaria_vesca FvH4_5g32530 FvH4_5g32530
malus_domestica MD15G1403700.v1.1
prunus_persica Prupe.1G549700_v2.0.a1 Prupe.1G549700_v2.0.a1
pyrus_communis pycom15g36100
rosa_chinensis RchiOBHm_Chr7g0226331 RchiOBHm_Chr7g0229101 RchiOBHm_Chr7g0229111 RchiOBHm_Chr7g0229141 RchiOBHm_Chr7g0229161 RchiOBHm_Chr7g0229171 RchiOBHm_Chr7g0229211 RchiOBHm_Chr7g0229241 RchiOBHm_Chr7g0229381 RchiOBHm_Chr7g0229761 RchiOBHm_Chr7g0229911
rosa_laevigata RLG00000000796 RLG00000001464 RLG00000001466 RLG00000001469 RLG00000001523 RLG00000001526 RLG00000001529 RLG00000001530 RLG00000001749 RLG00000001913 RLG00000002114 RLG00000002115 RLG00000023248 RLG00000023250
rosa_multiflora Rmu_co8281135.1_g000001 Rmu_sc0000271.1_g000002 Rmu_sc0000271.1_g000007 Rmu_sc0000271.1_g000014 Rmu_sc0000693.1_g000012 Rmu_sc0000693.1_g000015 Rmu_sc0000693.1_g000023 Rmu_sc0001044.1_g000005 Rmu_sc0006689.1_g000007 Rmu_sc0012733.1_g000005
rosa_roxburghii Rroxscaffold_3G00230540 Rroxscaffold_3G00230590 Rroxscaffold_3G00230600 Rroxscaffold_3G00230700 Rroxscaffold_3G00230710 Rroxscaffold_3G00232980 Rroxscaffold_3G00237610
rosa_rugosa Rorug07G0203800 Rorug07G0203900 Rorug07G0256100 Rorug07G0256400 Rorug07G0256400 Rorug07G0256400 Rorug07G0256500 Rorug07G0256600 Rorug07G0256600 Rorug07G0257100 Rorug07G0257200 Rorug07G0257300 Rorug07G0257400
rosa_samantha Rh7DG401100 Rh7DG401300 Rh7DG401900 Rh7DG402100 Rh7DG402300 Rh7DG402700
rosa_wichuraiana Rw0G001910 Rw0G001930 Rw0G001940 Rw7G033790 Rw7G033810 Rw7G033840 Rw7G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 1072
AclWI GGATC 2 cut(s) 331, 344
AcoI YGGCCR 2 cut(s) 664, 668
AcsI RAATTY 2 cut(s) 33, 1164
AcuI CTGAAG 1 cut(s) 714
AfaI GTAC 1 cut(s) 357
AflIII ACRYGT 1 cut(s) 892
AgsI TTSAA 6 cut(s) 163, 208, 535, 760, 781, 872
AjnI CCWGG 1 cut(s) 256
AluBI AGCT 6 cut(s) 177, 408, 841, 964, 1054, 1174
AluI AGCT 6 cut(s) 177, 408, 841, 964, 1054, 1174
Alw26I GTCTC 4 cut(s) 485, 1001, 1090, 1173
AlwI GGATC 2 cut(s) 331, 344
AoxI GGCC 2 cut(s) 664, 668
ApeKI GCWGC 2 cut(s) 619, 811
ApoI RAATTY 2 cut(s) 33, 1164
AseI ATTAAT 2 cut(s) 240, 318
AspS9I GGNCC 1 cut(s) 1032
AsuII TTCGAA 2 cut(s) 746, 1168
AvaII GGWCC 1 cut(s) 1032
BaeGI GKGCMC 1 cut(s) 1135
BamHI GGATCC 1 cut(s) 336
BauI CACGAG 1 cut(s) 180
BbsI GAAGAC 1 cut(s) 215
BbvCI CCTCAGC 1 cut(s) 327
BbvI GCAGC 2 cut(s) 631, 798
BccI CCATC 3 cut(s) 221, 326, 826
BcgI CGANNNNNNTGC 6 cut(s) 161, 195, 589, 623, 992, 1026
BciT130I CCWGG 1 cut(s) 258
BclI TGATCA 1 cut(s) 724
BcoDI GTCTC 4 cut(s) 485, 1001, 1090, 1173
BfaI CTAG 1 cut(s) 366
BglI GCCNNNNNGGC 3 cut(s) 929, 1019, 1139
BisI GCNGC 2 cut(s) 620, 812
BlpI GCTNAGC 1 cut(s) 1055
BlsI GCNGC 2 cut(s) 621, 813
Bme1390I CCNGG 1 cut(s) 258
Bme18I GGWCC 1 cut(s) 1032
BmgT120I GGNCC 1 cut(s) 1032
BmiI GGNNCC 1 cut(s) 338
BmrFI CCNGG 1 cut(s) 258
BmsI GCATC 3 cut(s) 70, 780, 855
BpiI GAAGAC 1 cut(s) 215
Bpu10I CCTNAGC 2 cut(s) 327, 404
Bpu1102I GCTNAGC 1 cut(s) 1055
Bpu14I TTCGAA 2 cut(s) 746, 1168
BpuEI CTTGAG 1 cut(s) 241
BsaJI CCNNGG 2 cut(s) 544, 1035
Bse118I RCCGGY 1 cut(s) 666
BseBI CCWGG 1 cut(s) 258
BseDI CCNNGG 2 cut(s) 544, 1035
BseGI GGATG 7 cut(s) 10, 337, 598, 685, 955, 1045, 1165
BseMII CTCAG 2 cut(s) 318, 936
BseRI GAGGAG 2 cut(s) 404, 480
BseSI GKGCMC 1 cut(s) 1135
BseXI GCAGC 2 cut(s) 631, 798
BsgI GTGCAG 1 cut(s) 638
Bsh1285I CGRYCG 2 cut(s) 1066, 1186
BshFI GGCC 2 cut(s) 666, 670
BsiEI CGRYCG 2 cut(s) 1066, 1186
BsiSI CCGG 1 cut(s) 667
BsmAI GTCTC 4 cut(s) 485, 1001, 1090, 1173
BsmBI CGTCTC 1 cut(s) 1173
BsmI GAATGC 1 cut(s) 141
BsnI GGCC 2 cut(s) 666, 670
Bsp119I TTCGAA 2 cut(s) 746, 1168
Bsp1286I GDGCHC 1 cut(s) 1135
Bsp143I GATC 6 cut(s) 336, 724, 805, 973, 1063, 1183
Bsp1720I GCTNAGC 1 cut(s) 1055
BspACI CCGC 1 cut(s) 1072
BspANI GGCC 2 cut(s) 666, 670
BspCNI CTCAG 2 cut(s) 319, 937
BspLI GGNNCC 1 cut(s) 338
BspPI GGATC 2 cut(s) 331, 344
BspT104I TTCGAA 2 cut(s) 746, 1168
BsrFI RCCGGY 1 cut(s) 666
BssAI RCCGGY 1 cut(s) 666
BssECI CCNNGG 2 cut(s) 544, 1035
BssMI GATC 6 cut(s) 336, 724, 805, 973, 1063, 1183
BssSI CACGAG 1 cut(s) 180
BssT1I CCWWGG 1 cut(s) 544
Bst2BI CACGAG 1 cut(s) 180
Bst2UI CCWGG 1 cut(s) 258
Bst4CI ACNGT 1 cut(s) 418
Bst6I CTCTTC 4 cut(s) 381, 729, 999, 1088
BstBI TTCGAA 2 cut(s) 746, 1168
BstC8I GCNNGC 4 cut(s) 85, 410, 668, 1070
BstF5I GGATG 7 cut(s) 10, 337, 598, 685, 955, 1045, 1165
BstKTI GATC 6 cut(s) 339, 727, 808, 976, 1066, 1186
BstMAI GTCTC 4 cut(s) 485, 1001, 1090, 1173
BstMBI GATC 6 cut(s) 336, 724, 805, 973, 1063, 1183
BstMCI CGRYCG 2 cut(s) 1066, 1186
BstMWI GCNNNNNNNGC 6 cut(s) 147, 519, 929, 1019, 1065, 1139
BstNI CCWGG 1 cut(s) 258
BstNSI RCATGY 1 cut(s) 896
BstSCI CCNGG 1 cut(s) 256
BstSLI GKGCMC 1 cut(s) 1135
BstV1I GCAGC 2 cut(s) 631, 798
BstV2I GAAGAC 1 cut(s) 215
BstX2I RGATCY 1 cut(s) 336
BstYI RGATCY 1 cut(s) 336
BsuRI GGCC 2 cut(s) 666, 670
BtsCI GGATG 7 cut(s) 10, 337, 598, 685, 955, 1045, 1165
Cac8I GCNNGC 4 cut(s) 85, 410, 668, 1070
Cfr10I RCCGGY 1 cut(s) 666
Cfr13I GGNCC 1 cut(s) 1032
Csp6I GTAC 1 cut(s) 356
CviAII CATG 5 cut(s) 341, 515, 803, 862, 893
CviQI GTAC 1 cut(s) 356
DpnI GATC 6 cut(s) 338, 726, 807, 975, 1065, 1185
DpnII GATC 6 cut(s) 336, 724, 805, 973, 1063, 1183
EaeI YGGCCR 2 cut(s) 664, 668
Eam1104I CTCTTC 4 cut(s) 381, 729, 999, 1088
EarI CTCTTC 4 cut(s) 381, 729, 999, 1088
Eco130I CCWWGG 1 cut(s) 544
Eco47I GGWCC 1 cut(s) 1032
Eco57I CTGAAG 1 cut(s) 714
EcoRII CCWGG 1 cut(s) 256
EcoT14I CCWWGG 1 cut(s) 544
EcoT22I ATGCAT 1 cut(s) 317
ErhI CCWWGG 1 cut(s) 544
Esp3I CGTCTC 1 cut(s) 1173
FaeI CATG 5 cut(s) 344, 518, 806, 865, 896
FatI CATG 5 cut(s) 340, 514, 802, 861, 892
FbaI TGATCA 1 cut(s) 724
Fnu4HI GCNGC 2 cut(s) 620, 812
FokI GGATG 7 cut(s) 17, 344, 605, 692, 962, 1052, 1172
FseI GGCCGGCC 1 cut(s) 670
Fsp4HI GCNGC 2 cut(s) 620, 812
FspBI CTAG 1 cut(s) 366
GluI GCNGC 2 cut(s) 620, 812
HaeIII GGCC 2 cut(s) 666, 670
HapII CCGG 1 cut(s) 667
Hin1II CATG 5 cut(s) 344, 518, 806, 865, 896
HincII GTYRAC 1 cut(s) 800
HindII GTYRAC 1 cut(s) 800
HindIII AAGCTT 3 cut(s) 962, 1052, 1172
HinfI GANTC 3 cut(s) 105, 392, 796
HpaII CCGG 1 cut(s) 667
Hpy166II GTNNAC 2 cut(s) 640, 800
Hpy188I TCNGA 5 cut(s) 286, 946, 959, 1036, 1049
Hpy188III TCNNGA 4 cut(s) 163, 182, 220, 722
Hpy8I GTNNAC 2 cut(s) 640, 800
Hpy99I CGWCG 2 cut(s) 567, 1064
HpyAV CCTTC 3 cut(s) 169, 529, 742
HpyCH4III ACNGT 1 cut(s) 418
HpyCH4V TGCA 7 cut(s) 128, 315, 398, 412, 619, 793, 899
HpyF10VI GCNNNNNNNGC 6 cut(s) 147, 519, 929, 1019, 1065, 1139
Hsp92II CATG 5 cut(s) 344, 518, 806, 865, 896
KroI GCCGGC 1 cut(s) 666
KroNI GCCGGC 1 cut(s) 668
Ksp22I TGATCA 1 cut(s) 724
Kzo9I GATC 6 cut(s) 336, 724, 805, 973, 1063, 1183
LpnPI CCDG 8 cut(s) 13, 43, 96, 117, 243, 270, 537, 680
Lsp1109I GCAGC 2 cut(s) 631, 798
LweI GCATC 3 cut(s) 70, 780, 855
MaeI CTAG 1 cut(s) 366
MaeIII GTNAC 1 cut(s) 182
MalI GATC 6 cut(s) 338, 726, 807, 975, 1065, 1185
MboI GATC 6 cut(s) 336, 724, 805, 973, 1063, 1183
MboII GAAGA 9 cut(s) 220, 398, 491, 512, 712, 746, 923, 1016, 1105
MflI RGATCY 1 cut(s) 336
MhlI GDGCHC 1 cut(s) 1135
MluCI AATT 8 cut(s) 33, 203, 237, 271, 303, 319, 822, 1164
MlyI GAGTC 3 cut(s) 99, 401, 805
MmeI TCCRAC 1 cut(s) 82
Mph1103I ATGCAT 1 cut(s) 317
MroNI GCCGGC 1 cut(s) 666
MseI TTAA 3 cut(s) 240, 318, 816
MspI CCGG 1 cut(s) 667
MspR9I CCNGG 1 cut(s) 258
Mva1269I GAATGC 1 cut(s) 141
MvaI CCWGG 1 cut(s) 258
MwoI GCNNNNNNNGC 6 cut(s) 147, 519, 929, 1019, 1065, 1139
NaeI GCCGGC 1 cut(s) 668
NdeII GATC 6 cut(s) 336, 724, 805, 973, 1063, 1183
NgoMIV GCCGGC 1 cut(s) 666
NlaIII CATG 5 cut(s) 344, 518, 806, 865, 896
NlaIV GGNNCC 1 cut(s) 338
NmeAIII GCCGAG 1 cut(s) 853
NmuCI GTSAC 1 cut(s) 182
NsiI ATGCAT 1 cut(s) 317
NspI RCATGY 1 cut(s) 896
NspV TTCGAA 2 cut(s) 746, 1168
PciI ACATGT 1 cut(s) 892
PctI GAATGC 1 cut(s) 141
PdiI GCCGGC 1 cut(s) 668
PkrI GCNGC 2 cut(s) 621, 813
Ple19I CGATCG 2 cut(s) 1066, 1186
PleI GAGTC 3 cut(s) 99, 400, 804
PpsI GAGTC 3 cut(s) 99, 400, 804
PscI ACATGT 1 cut(s) 892
PshBI ATTAAT 2 cut(s) 240, 318
Psp6I CCWGG 1 cut(s) 256
PspGI CCWGG 1 cut(s) 256
PspN4I GGNNCC 1 cut(s) 338
PspPI GGNCC 1 cut(s) 1032
PsrI GAACNNNNNNTAC 2 cut(s) 361, 393
PsuI RGATCY 1 cut(s) 336
PvuI CGATCG 2 cut(s) 1066, 1186
RigI GGCCGGCC 1 cut(s) 670
RsaI GTAC 1 cut(s) 357
RsaNI GTAC 1 cut(s) 356
SaqAI TTAA 3 cut(s) 240, 318, 816
SatI GCNGC 2 cut(s) 620, 812
Sau3AI GATC 6 cut(s) 336, 724, 805, 973, 1063, 1183
Sau96I GGNCC 1 cut(s) 1032
SchI GAGTC 3 cut(s) 99, 401, 805
ScrFI CCNGG 1 cut(s) 258
SduI GDGCHC 1 cut(s) 1135
SetI ASST 9 cut(s) 179, 410, 741, 843, 966, 1034, 1056, 1154, 1176
SfaNI GCATC 3 cut(s) 70, 780, 855
SfuI TTCGAA 2 cut(s) 746, 1168
SinI GGWCC 1 cut(s) 1032
SmlI CTYRAG 1 cut(s) 220
SmoI CTYRAG 1 cut(s) 220
Sse9I AATT 8 cut(s) 33, 203, 237, 271, 303, 319, 822, 1164
SsiI CCGC 1 cut(s) 1072
SspMI CTAG 1 cut(s) 366
StyD4I CCNGG 1 cut(s) 256
StyI CCWWGG 1 cut(s) 544
TaaI ACNGT 1 cut(s) 418
TaqI TCGA 6 cut(s) 14, 44, 74, 609, 746, 1168
TasI AATT 8 cut(s) 33, 203, 237, 271, 303, 319, 822, 1164
Tru1I TTAA 3 cut(s) 240, 318, 816
Tru9I TTAA 3 cut(s) 240, 318, 816
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 2 cut(s) 619, 811
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 6 cut(s) 609, 728, 903, 966, 1056, 1176
TspGWI ACGGA 1 cut(s) 692
VpaK11BI GGWCC 1 cut(s) 1032
VspI ATTAAT 2 cut(s) 240, 318
XapI RAATTY 2 cut(s) 33, 1164
XceI RCATGY 1 cut(s) 896
XspI CTAG 1 cut(s) 366
Zsp2I ATGCAT 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.