Rh7DG401100
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000615
Physical Location & Seq
Forward (+)
55212076 .. 55216427
4352 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG401100.1

Sequence Viewer

Length: 1221 bp
ATGAAGTGCCTCTGGCAGGCCAGTGGAAGAGAACGAGGGAGGAGGGATGTACAGTTCGCACCGCCGTCGCCGGAGACAGAGAGATTGAGCGGAGGGATGTTTGGGTTCGATCAAATCGCACTGAGGAGGATACAAGGACTTAATACACATACACAGAGACTTCTCTTTTGTTATCTTCTCTGCTTCTCTCTCTCTGTGTGGCCTCCGAGAGAGAGTCTCTGTGTTCTTGGCTTCGCTCCTTTTCCTCTACCTGAGTTTAGTTTCCTTGCGAGACGATCTTGTTTTCTGATTTTATACGATGGGTGGAATGCGACAGGCAACAGCATTCTTGGCAAAAAAGCTTTCAATTCCAAGCGTAGCTCTAATGGTGTCACGAGCACCTGTGAATTAAAGACTGCTATCTTGAGAGATGGACAGCAAGTTAATGTTATAGACACTCCTGGTCTTTTTGATTATTCTGCCAAATCAGACTTCATTGGCAAAGAAATTGTCAAATGCATTAATTTGGCTAAGGATGGAATCCATGCTGTTCTTGTGGTTTTCTCAACTAGAACTCGCTTTTCTCAAGAAGAGGAGTCTGCAATCCTTAGCTTGCAAACTCTATTTGGAAGTAAAATCTTTGACTATATGATTGTTGTCTTTACGGGAGGAGATGACTTTGAAGAAAATGATGAGACTTTGGAAGATTATTTGGGCCGTGATTGCCCGGAGCCTTTAAAGGAAATCCTTGGTCTATGTGGAAATCGTCGTGTGCTTTTTGATAACAAGACTAAGGATGAAAGCAAGAGGGTCCAACAAGTGCAGCAGCTTCTCTCGCTTGTAAACTCGGTTATAGCACAGAATGGTGGGCGACCATACACGGATGAGATATTTGCTGAAGTTAAGAAAGGGGCTATGAAACTTCGTGATCAACAAGAAGAGGTTGCTTCTTTGAAGGGGTATTCAAAACGAGAAATATCTCATTTGAACGAGCAGATGCAGCTTGCTCATGATCTCCAGCTTAAACGAATTACTGAGATGGTTGAGTTAAAGATGAGAGAAACAACTATGATGCTTGAACAAAAGTTAGCAGATGAACATGCTGCACGACTAAGAGCAGAAGAGACTGCCCAAGAGGCTCAACAAAGGTCTGAGGATGAAATCCGAAAGCTTAGAGACGATCTACAAAAAGCAGAGGAAGAGCTTCGGAAAAGAGTTGAAAGCAAGTGTGCTATTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

406

Amino Acids

46.26

Weight (kDa)

6.11

Isoelectric Point (pI)

55.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIG1 PF04548 101 - 304 2.6e-74 AIG1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000615)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33970 AT1G33970 AT1G33970 AT1G33970 AT1G33970
fragaria_vesca FvH4_5g32530 FvH4_5g32530
malus_domestica MD15G1403700.v1.1
prunus_persica Prupe.1G549700_v2.0.a1 Prupe.1G549700_v2.0.a1
pyrus_communis pycom15g36100
rosa_chinensis RchiOBHm_Chr7g0226331 RchiOBHm_Chr7g0229101 RchiOBHm_Chr7g0229111 RchiOBHm_Chr7g0229141 RchiOBHm_Chr7g0229161 RchiOBHm_Chr7g0229171 RchiOBHm_Chr7g0229211 RchiOBHm_Chr7g0229241 RchiOBHm_Chr7g0229381 RchiOBHm_Chr7g0229761 RchiOBHm_Chr7g0229911
rosa_laevigata RLG00000000796 RLG00000001464 RLG00000001466 RLG00000001469 RLG00000001523 RLG00000001526 RLG00000001529 RLG00000001530 RLG00000001749 RLG00000001913 RLG00000002114 RLG00000002115 RLG00000023248 RLG00000023250
rosa_multiflora Rmu_co8281135.1_g000001 Rmu_sc0000271.1_g000002 Rmu_sc0000271.1_g000007 Rmu_sc0000271.1_g000014 Rmu_sc0000693.1_g000012 Rmu_sc0000693.1_g000015 Rmu_sc0000693.1_g000023 Rmu_sc0001044.1_g000005 Rmu_sc0006689.1_g000007 Rmu_sc0012733.1_g000005
rosa_roxburghii Rroxscaffold_3G00230540 Rroxscaffold_3G00230590 Rroxscaffold_3G00230600 Rroxscaffold_3G00230700 Rroxscaffold_3G00230710 Rroxscaffold_3G00232980 Rroxscaffold_3G00237610
rosa_rugosa Rorug07G0203800 Rorug07G0203900 Rorug07G0256100 Rorug07G0256400 Rorug07G0256400 Rorug07G0256400 Rorug07G0256500 Rorug07G0256600 Rorug07G0256600 Rorug07G0257100 Rorug07G0257200 Rorug07G0257300 Rorug07G0257400
rosa_samantha Rh7DG401100 Rh7DG401300 Rh7DG401900 Rh7DG402100 Rh7DG402300 Rh7DG402700
rosa_wichuraiana Rw0G001910 Rw0G001930 Rw0G001940 Rw7G033790 Rw7G033810 Rw7G033840 Rw7G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 90
AciI CCGC 2 cut(s) 62, 90
AcuI CTGAAG 1 cut(s) 897
AfaI GTAC 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 16
AgsI TTSAA 7 cut(s) 346, 662, 934, 945, 967, 1058, 1199
AjnI CCWGG 1 cut(s) 439
AjuI GAANNNNNNNTTGG 2 cut(s) 455, 487
AloI GAACNNNNNNTCC 2 cut(s) 38, 70
AluBI AGCT 8 cut(s) 341, 360, 591, 808, 982, 1000, 1150, 1183
AluI AGCT 8 cut(s) 341, 360, 591, 808, 982, 1000, 1150, 1183
Alw21I GWGCWC 1 cut(s) 380
Alw26I GTCTC 7 cut(s) 68, 151, 221, 265, 668, 1097, 1149
AoxI GGCC 3 cut(s) 18, 200, 694
ApeKI GCWGC 4 cut(s) 802, 805, 979, 1082
ArsI GACNNNNNNTTYG 4 cut(s) 150, 182, 474, 506
AseI ATTAAT 1 cut(s) 501
Asp700I GAANNNNTTC 1 cut(s) 1182
AspS9I GGNCC 2 cut(s) 694, 790
AsuC2I CCSGG 1 cut(s) 707
AvaII GGWCC 1 cut(s) 790
BauI CACGAG 1 cut(s) 373
Bbv12I GWGCWC 1 cut(s) 380
BbvI GCAGC 4 cut(s) 814, 817, 991, 1069
BccI CCATC 4 cut(s) 293, 404, 509, 1012
BceAI ACGGC 2 cut(s) 49, 681
BcgI CGANNNNNNTGC 2 cut(s) 48, 82
BciT130I CCWGG 1 cut(s) 441
BciVI GTATCC 1 cut(s) 123
BclI TGATCA 1 cut(s) 907
BcnI CCSGG 1 cut(s) 707
BcoDI GTCTC 7 cut(s) 68, 151, 221, 265, 668, 1097, 1149
BfaI CTAG 1 cut(s) 549
BfuI GTATCC 1 cut(s) 123
BglI GCCNNNNNGGC 1 cut(s) 1115
BisI GCNGC 4 cut(s) 803, 806, 980, 1083
BlsI GCNGC 4 cut(s) 804, 807, 981, 1084
Bme1390I CCNGG 2 cut(s) 441, 707
Bme18I GGWCC 1 cut(s) 790
BmgT120I GGNCC 2 cut(s) 694, 790
BmiI GGNNCC 2 cut(s) 711, 791
BmrFI CCNGG 2 cut(s) 441, 707
BmsI GCATC 2 cut(s) 966, 1041
BplI GAGNNNNNCTC 2 cut(s) 201, 233
BpmI CTGGAG 1 cut(s) 980
Bpu10I CCTNAGC 2 cut(s) 510, 587
BpuEI CTTGAG 2 cut(s) 424, 549
BpuMI CCSGG 1 cut(s) 707
BsaJI CCNNGG 1 cut(s) 727
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse1I ACTGG 1 cut(s) 21
BseBI CCWGG 1 cut(s) 441
BseDI CCNNGG 1 cut(s) 727
BseGI GGATG 6 cut(s) 52, 102, 520, 781, 868, 1141
BseLI CCNNNNNNNGG 1 cut(s) 16
BseMII CTCAG 4 cut(s) 113, 243, 1005, 1122
BseNI ACTGG 1 cut(s) 21
BseRI GAGGAG 4 cut(s) 55, 139, 587, 663
BseXI GCAGC 4 cut(s) 814, 817, 991, 1069
BsgI GTGCAG 2 cut(s) 821, 1068
BshFI GGCC 3 cut(s) 20, 202, 696
BsiHKAI GWGCWC 1 cut(s) 380
BsiSI CCGG 2 cut(s) 71, 707
BslI CCNNNNNNNGG 1 cut(s) 16
BsmAI GTCTC 7 cut(s) 68, 151, 221, 265, 668, 1097, 1149
BsmBI CGTCTC 2 cut(s) 265, 1149
BsmI GAATGC 2 cut(s) 313, 324
BsnI GGCC 3 cut(s) 20, 202, 696
Bsp1286I GDGCHC 1 cut(s) 380
Bsp1407I TGTACA 1 cut(s) 49
Bsp143I GATC 5 cut(s) 109, 275, 907, 991, 1159
BspACI CCGC 2 cut(s) 62, 90
BspANI GGCC 3 cut(s) 20, 202, 696
BspCNI CTCAG 4 cut(s) 114, 244, 1006, 1123
BspHI TCATGA 1 cut(s) 988
BspLI GGNNCC 2 cut(s) 711, 791
BspQI GCTCTTC 1 cut(s) 1173
BsrBI CCGCTC 1 cut(s) 90
BsrGI TGTACA 1 cut(s) 49
BsrI ACTGG 1 cut(s) 21
BssECI CCNNGG 1 cut(s) 727
BssMI GATC 5 cut(s) 109, 275, 907, 991, 1159
BssSI CACGAG 1 cut(s) 373
BssT1I CCWWGG 1 cut(s) 727
Bst2BI CACGAG 1 cut(s) 373
Bst2UI CCWGG 1 cut(s) 441
Bst4CI ACNGT 1 cut(s) 54
Bst6I CTCTTC 5 cut(s) 22, 564, 912, 1095, 1173
BstAUI TGTACA 1 cut(s) 49
BstC8I GCNNGC 3 cut(s) 18, 593, 984
BstDEI CTNAG 9 cut(s) 122, 252, 510, 587, 771, 1014, 1091, 1131, 1151
BstENI CCTNNNNNAGG 1 cut(s) 14
BstF5I GGATG 6 cut(s) 52, 102, 520, 781, 868, 1141
BstKTI GATC 5 cut(s) 112, 278, 910, 994, 1162
BstMAI GTCTC 7 cut(s) 68, 151, 221, 265, 668, 1097, 1149
BstMBI GATC 5 cut(s) 109, 275, 907, 991, 1159
BstMWI GCNNNNNNNGC 5 cut(s) 330, 702, 814, 979, 1115
BstNI CCWGG 1 cut(s) 441
BstNSI RCATGY 1 cut(s) 1082
BstSCI CCNGG 2 cut(s) 439, 705
BstV1I GCAGC 4 cut(s) 814, 817, 991, 1069
BsuI GTATCC 1 cut(s) 123
BsuRI GGCC 3 cut(s) 20, 202, 696
BtsCI GGATG 6 cut(s) 52, 102, 520, 781, 868, 1141
BtsIMutI CAGTG 2 cut(s) 28, 119
Cac8I GCNNGC 3 cut(s) 18, 593, 984
CciI TCATGA 1 cut(s) 988
Cfr13I GGNCC 2 cut(s) 694, 790
Csp6I GTAC 1 cut(s) 50
CviAII CATG 3 cut(s) 524, 989, 1079
CviQI GTAC 1 cut(s) 50
DdeI CTNAG 9 cut(s) 122, 252, 510, 587, 771, 1014, 1091, 1131, 1151
DpnI GATC 5 cut(s) 111, 277, 909, 993, 1161
DpnII GATC 5 cut(s) 109, 275, 907, 991, 1159
DraI TTTAAA 1 cut(s) 717
Eam1104I CTCTTC 5 cut(s) 22, 564, 912, 1095, 1173
EarI CTCTTC 5 cut(s) 22, 564, 912, 1095, 1173
Eco130I CCWWGG 1 cut(s) 727
Eco47I GGWCC 1 cut(s) 790
Eco57I CTGAAG 1 cut(s) 897
EcoNI CCTNNNNNAGG 1 cut(s) 14
EcoRII CCWGG 1 cut(s) 439
EcoT14I CCWWGG 1 cut(s) 727
EcoT22I ATGCAT 1 cut(s) 500
ErhI CCWWGG 1 cut(s) 727
Esp3I CGTCTC 2 cut(s) 265, 1149
FaeI CATG 3 cut(s) 527, 992, 1082
FatI CATG 3 cut(s) 523, 988, 1078
FbaI TGATCA 1 cut(s) 907
Fnu4HI GCNGC 4 cut(s) 803, 806, 980, 1083
FokI GGATG 6 cut(s) 59, 109, 527, 788, 875, 1148
Fsp4HI GCNGC 4 cut(s) 803, 806, 980, 1083
FspBI CTAG 1 cut(s) 549
GluI GCNGC 4 cut(s) 803, 806, 980, 1083
GsuI CTGGAG 1 cut(s) 980
HaeIII GGCC 3 cut(s) 20, 202, 696
HapII CCGG 2 cut(s) 71, 707
Hin1II CATG 3 cut(s) 527, 992, 1082
HindIII AAGCTT 2 cut(s) 339, 1148
HinfI GANTC 3 cut(s) 214, 519, 575
HpaII CCGG 2 cut(s) 71, 707
Hpy166II GTNNAC 1 cut(s) 823
Hpy188I TCNGA 6 cut(s) 207, 288, 469, 1132, 1145, 1188
Hpy188III TCNNGA 5 cut(s) 373, 403, 566, 905, 989
Hpy8I GTNNAC 1 cut(s) 823
Hpy99I CGWCG 2 cut(s) 70, 750
HpyAV CCTTC 1 cut(s) 928
HpyCH4III ACNGT 1 cut(s) 54
HpyCH4V TGCA 6 cut(s) 498, 581, 595, 802, 979, 1085
HpyF10VI GCNNNNNNNGC 5 cut(s) 330, 702, 814, 979, 1115
HpyF3I CTNAG 9 cut(s) 122, 252, 510, 587, 771, 1014, 1091, 1131, 1151
Hsp92II CATG 3 cut(s) 527, 992, 1082
Ksp22I TGATCA 1 cut(s) 907
Kzo9I GATC 5 cut(s) 109, 275, 907, 991, 1159
LguI GCTCTTC 1 cut(s) 1173
LmnI GCTCC 2 cut(s) 241, 709
Lsp1109I GCAGC 4 cut(s) 814, 817, 991, 1069
LweI GCATC 2 cut(s) 966, 1041
MaeI CTAG 1 cut(s) 549
MaeIII GTNAC 1 cut(s) 370
MalI GATC 5 cut(s) 111, 277, 909, 993, 1161
MbiI CCGCTC 1 cut(s) 90
MboI GATC 5 cut(s) 109, 275, 907, 991, 1159
MboII GAAGA 8 cut(s) 39, 167, 581, 674, 695, 929, 1112, 1190
MhlI GDGCHC 1 cut(s) 380
MluCI AATT 5 cut(s) 346, 386, 486, 502, 1008
MlyI GAGTC 2 cut(s) 223, 584
MmeI TCCRAC 1 cut(s) 817
Mph1103I ATGCAT 1 cut(s) 500
MroXI GAANNNNTTC 1 cut(s) 1182
MseI TTAA 9 cut(s) 141, 389, 423, 501, 716, 882, 1002, 1028, 1219
MspI CCGG 2 cut(s) 71, 707
MspR9I CCNGG 2 cut(s) 441, 707
Mva1269I GAATGC 2 cut(s) 313, 324
MvaI CCWGG 1 cut(s) 441
MwoI GCNNNNNNNGC 5 cut(s) 330, 702, 814, 979, 1115
NciI CCSGG 1 cut(s) 707
NdeII GATC 5 cut(s) 109, 275, 907, 991, 1159
NlaIII CATG 3 cut(s) 527, 992, 1082
NlaIV GGNNCC 2 cut(s) 711, 791
NmuCI GTSAC 1 cut(s) 370
NsiI ATGCAT 1 cut(s) 500
NspI RCATGY 1 cut(s) 1082
PagI TCATGA 1 cut(s) 988
PciSI GCTCTTC 1 cut(s) 1173
PctI GAATGC 2 cut(s) 313, 324
PdmI GAANNNNTTC 1 cut(s) 1182
PfeI GAWTC 1 cut(s) 519
PkrI GCNGC 4 cut(s) 804, 807, 981, 1084
PleI GAGTC 2 cut(s) 222, 583
PpsI GAGTC 2 cut(s) 222, 583
PshBI ATTAAT 1 cut(s) 501
Psp6I CCWGG 1 cut(s) 439
PspGI CCWGG 1 cut(s) 439
PspN4I GGNNCC 2 cut(s) 711, 791
PspPI GGNCC 2 cut(s) 694, 790
RsaI GTAC 1 cut(s) 51
RsaNI GTAC 1 cut(s) 50
SapI GCTCTTC 1 cut(s) 1173
SaqAI TTAA 9 cut(s) 141, 389, 423, 501, 716, 882, 1002, 1028, 1219
SatI GCNGC 4 cut(s) 803, 806, 980, 1083
Sau3AI GATC 5 cut(s) 109, 275, 907, 991, 1159
Sau96I GGNCC 2 cut(s) 694, 790
SchI GAGTC 2 cut(s) 223, 584
ScrFI CCNGG 2 cut(s) 441, 707
SduI GDGCHC 1 cut(s) 380
SfaNI GCATC 2 cut(s) 966, 1041
SinI GGWCC 1 cut(s) 790
SmlI CTYRAG 2 cut(s) 403, 564
SmoI CTYRAG 2 cut(s) 403, 564
Sse9I AATT 5 cut(s) 346, 386, 486, 502, 1008
SsiI CCGC 2 cut(s) 62, 90
SspMI CTAG 1 cut(s) 549
StyD4I CCNGG 2 cut(s) 439, 705
StyI CCWWGG 1 cut(s) 727
TaaI ACNGT 1 cut(s) 54
TaqI TCGA 1 cut(s) 108
TasI AATT 5 cut(s) 346, 386, 486, 502, 1008
TatI WGTACW 1 cut(s) 49
TfiI GAWTC 1 cut(s) 519
Tru1I TTAA 9 cut(s) 141, 389, 423, 501, 716, 882, 1002, 1028, 1219
Tru9I TTAA 9 cut(s) 141, 389, 423, 501, 716, 882, 1002, 1028, 1219
TscAI CASTG 2 cut(s) 28, 126
TseFI GTSAC 1 cut(s) 370
TseI GCWGC 4 cut(s) 802, 805, 979, 1082
Tsp45I GTSAC 1 cut(s) 370
TspDTI ATGAA 6 cut(s) 17, 463, 792, 911, 1089, 1152
TspGWI ACGGA 1 cut(s) 875
TspRI CASTG 2 cut(s) 28, 126
VpaK11BI GGWCC 1 cut(s) 790
VspI ATTAAT 1 cut(s) 501
XagI CCTNNNNNAGG 1 cut(s) 14
XceI RCATGY 1 cut(s) 1082
XmnI GAANNNNTTC 1 cut(s) 1182
XspI CTAG 1 cut(s) 549
Zsp2I ATGCAT 1 cut(s) 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.