Rmu_sc0000271.1_g000007
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000271.1
OG0000615
Physical Location & Seq
Reverse (-)
37564 .. 40284
2721 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000271.1_g000007.1.cds

Sequence Viewer

Length: 1020 bp
atgggtggacgttcgattgatgttgagcgggaacttcccttttctaatgctgctcgcactatggtcttagttggacgcactggtaatggaaaaagtgcaacaggcaacagcattcttggcaaaaaagccttcaattccaggcgtagctctagtactgtcacgaccactactgaattgaagactgctatcttgggagatggacaacaaattaatgttatagacactcctggtctttttgataattctgccaaatcagactttattggcaaagaaattgtccaatgcattaaattggccaaggatggaatcgatgctgttcttgtggttctctcaactaaaactcgtttatcagaagaagaggagtctgcaatccgtagcttggaaactctatttggaagtaaaatctttgactatatgattattgtctttacggggggagatgagttggaagaaaatgatagcactttggaagattatttgggccgtgattgcccggagcctttgaaggaaatccttggtctgtgtggaaatcgctgtgtgctttttgataacaagactaaggatgaaagcaagagggtcgaacaagtgcagcggcttctctcgcttgtaaacttggttatagcacagaatggtgggcggccatacacggatgagatattagctgaagtgaagaaagaggctatgaaacttcgtgatcaacaagaagaggttgcttctttggaggggtattcaaaacgagaaatatctcatttgaatgagcagatgcagcctgcacatgatctgcagcttaaacgaattactgagatgggtgagttaaagataagagagaataccatgatgcttaaacaaaagttagcaggtgaacatgctgcacgactaagagcagaagagactgcccaagaggctcaacaaaggtctgagaatgaaatccgaaagcttagtgacgatctacaagcagagaagcggaaaagttgcagaagcggcagcatagaccacagattcagatgtgctattctttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

339

Amino Acids

37.84

Weight (kDa)

5.68

Isoelectric Point (pI)

46.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000615)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33970 AT1G33970 AT1G33970 AT1G33970 AT1G33970
fragaria_vesca FvH4_5g32530 FvH4_5g32530
malus_domestica MD15G1403700.v1.1
prunus_persica Prupe.1G549700_v2.0.a1 Prupe.1G549700_v2.0.a1
pyrus_communis pycom15g36100
rosa_chinensis RchiOBHm_Chr7g0226331 RchiOBHm_Chr7g0229101 RchiOBHm_Chr7g0229111 RchiOBHm_Chr7g0229141 RchiOBHm_Chr7g0229161 RchiOBHm_Chr7g0229171 RchiOBHm_Chr7g0229211 RchiOBHm_Chr7g0229241 RchiOBHm_Chr7g0229381 RchiOBHm_Chr7g0229761 RchiOBHm_Chr7g0229911
rosa_laevigata RLG00000000796 RLG00000001464 RLG00000001466 RLG00000001469 RLG00000001523 RLG00000001526 RLG00000001529 RLG00000001530 RLG00000001749 RLG00000001913 RLG00000002114 RLG00000002115 RLG00000023248 RLG00000023250
rosa_multiflora Rmu_co8281135.1_g000001 Rmu_sc0000271.1_g000002 Rmu_sc0000271.1_g000007 Rmu_sc0000271.1_g000014 Rmu_sc0000693.1_g000012 Rmu_sc0000693.1_g000015 Rmu_sc0000693.1_g000023 Rmu_sc0001044.1_g000005 Rmu_sc0006689.1_g000007 Rmu_sc0012733.1_g000005
rosa_roxburghii Rroxscaffold_3G00230540 Rroxscaffold_3G00230590 Rroxscaffold_3G00230600 Rroxscaffold_3G00230700 Rroxscaffold_3G00230710 Rroxscaffold_3G00232980 Rroxscaffold_3G00237610
rosa_rugosa Rorug07G0203800 Rorug07G0203900 Rorug07G0256100 Rorug07G0256400 Rorug07G0256400 Rorug07G0256400 Rorug07G0256500 Rorug07G0256600 Rorug07G0256600 Rorug07G0257100 Rorug07G0257200 Rorug07G0257300 Rorug07G0257400
rosa_samantha Rh7DG401100 Rh7DG401300 Rh7DG401900 Rh7DG402100 Rh7DG402300 Rh7DG402700
rosa_wichuraiana Rw0G001910 Rw0G001930 Rw0G001940 Rw7G033790 Rw7G033810 Rw7G033840 Rw7G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 848
Acc36I ACCTGC 1 cut(s) 848
AccBSI CCGCTC 1 cut(s) 28
AciI CCGC 5 cut(s) 28, 592, 637, 964, 981
AcoI YGGCCR 2 cut(s) 294, 638
AcuI CTGAAG 1 cut(s) 684
AfaI GTAC 1 cut(s) 154
AfiI CCNNNNNNNGG 1 cut(s) 379
AgsI TTSAA 5 cut(s) 133, 178, 505, 732, 754
AjnI CCWGG 2 cut(s) 137, 226
AjuI GAANNNNNNNTTGG 2 cut(s) 375, 407
AluBI AGCT 5 cut(s) 147, 378, 662, 787, 937
AluI AGCT 5 cut(s) 147, 378, 662, 787, 937
Alw26I GTCTC 1 cut(s) 884
AoxI GGCC 3 cut(s) 294, 481, 638
ApeKI GCWGC 6 cut(s) 50, 589, 766, 784, 869, 984
ArsI GACNNNNNNTTYG 2 cut(s) 261, 293
AseI ATTAAT 1 cut(s) 210
AspS9I GGNCC 1 cut(s) 481
AsuC2I CCSGG 1 cut(s) 494
AsuHPI GGTGA 2 cut(s) 821, 872
BalI TGGCCA 1 cut(s) 296
BbsI GAAGAC 1 cut(s) 185
BbvI GCAGC 6 cut(s) 37, 601, 778, 796, 856, 996
BccI CCATC 3 cut(s) 191, 296, 799
BceAI ACGGC 1 cut(s) 468
BcgI CGANNNNNNTGC 2 cut(s) 559, 593
BciT130I CCWGG 2 cut(s) 139, 228
BclI TGATCA 1 cut(s) 694
BcnI CCSGG 1 cut(s) 494
BcoDI GTCTC 1 cut(s) 884
BfaI CTAG 1 cut(s) 150
BfmI CTRYAG 1 cut(s) 782
BfuAI ACCTGC 1 cut(s) 848
BglI GCCNNNNNGGC 1 cut(s) 902
BisI GCNGC 9 cut(s) 51, 590, 593, 638, 767, 785, 870, 982, 985
BlsI GCNGC 9 cut(s) 52, 591, 594, 639, 768, 786, 871, 983, 986
BmcAI AGTACT 1 cut(s) 154
Bme1390I CCNGG 3 cut(s) 139, 228, 494
BmgT120I GGNCC 1 cut(s) 481
BmiI GGNNCC 1 cut(s) 498
BmrFI CCNGG 3 cut(s) 139, 228, 494
BmsI GCATC 3 cut(s) 301, 753, 828
BpiI GAAGAC 1 cut(s) 185
BpuMI CCSGG 1 cut(s) 494
Bsa29I ATCGAT 1 cut(s) 309
BsaJI CCNNGG 2 cut(s) 297, 514
Bsc4I CCNNNNNNNGG 1 cut(s) 379
Bse1I ACTGG 1 cut(s) 85
BseBI CCWGG 2 cut(s) 139, 228
BseCI ATCGAT 1 cut(s) 309
BseDI CCNNGG 2 cut(s) 297, 514
BseGI GGATG 3 cut(s) 307, 568, 655
BseLI CCNNNNNNNGG 1 cut(s) 379
BseMII CTCAG 2 cut(s) 792, 909
BseNI ACTGG 1 cut(s) 85
BseRI GAGGAG 1 cut(s) 374
BseXI GCAGC 6 cut(s) 37, 601, 778, 796, 856, 996
BsgI GTGCAG 3 cut(s) 608, 756, 855
BshFI GGCC 3 cut(s) 296, 483, 640
BshVI ATCGAT 1 cut(s) 309
BsiSI CCGG 1 cut(s) 494
BslI CCNNNNNNNGG 1 cut(s) 379
BsmAI GTCTC 1 cut(s) 884
BsmI GAATGC 1 cut(s) 111
BsnI GGCC 3 cut(s) 296, 483, 640
Bsp143I GATC 3 cut(s) 694, 778, 946
BspACI CCGC 5 cut(s) 28, 592, 637, 964, 981
BspANI GGCC 3 cut(s) 296, 483, 640
BspCNI CTCAG 2 cut(s) 793, 910
BspDI ATCGAT 1 cut(s) 309
BspLI GGNNCC 1 cut(s) 498
BspMAI CTGCAG 1 cut(s) 786
BspMI ACCTGC 1 cut(s) 848
BsrBI CCGCTC 1 cut(s) 28
BsrI ACTGG 1 cut(s) 85
BssECI CCNNGG 2 cut(s) 297, 514
BssMI GATC 3 cut(s) 694, 778, 946
BssT1I CCWWGG 2 cut(s) 297, 514
Bst2UI CCWGG 2 cut(s) 139, 228
Bst4CI ACNGT 1 cut(s) 157
Bst6I CTCTTC 3 cut(s) 351, 699, 882
BstC8I GCNNGC 2 cut(s) 55, 771
BstDEI CTNAG 6 cut(s) 67, 558, 801, 878, 918, 938
BstF5I GGATG 3 cut(s) 307, 568, 655
BstKTI GATC 3 cut(s) 697, 781, 949
BstMAI GTCTC 1 cut(s) 884
BstMBI GATC 3 cut(s) 694, 778, 946
BstMWI GCNNNNNNNGC 6 cut(s) 117, 489, 601, 766, 902, 981
BstNI CCWGG 2 cut(s) 139, 228
BstNSI RCATGY 1 cut(s) 869
BstSCI CCNGG 3 cut(s) 137, 226, 492
BstSFI CTRYAG 1 cut(s) 782
BstV1I GCAGC 6 cut(s) 37, 601, 778, 796, 856, 996
BstV2I GAAGAC 1 cut(s) 185
Bsu15I ATCGAT 1 cut(s) 309
BsuRI GGCC 3 cut(s) 296, 483, 640
BsuTUI ATCGAT 1 cut(s) 309
BtsCI GGATG 3 cut(s) 307, 568, 655
BtsIMutI CAGTG 1 cut(s) 78
BveI ACCTGC 1 cut(s) 848
Cac8I GCNNGC 2 cut(s) 55, 771
Cfr13I GGNCC 1 cut(s) 481
ClaI ATCGAT 1 cut(s) 309
CseI GACGC 1 cut(s) 84
Csp6I GTAC 1 cut(s) 153
CviAII CATG 3 cut(s) 776, 835, 866
CviQI GTAC 1 cut(s) 153
DdeI CTNAG 6 cut(s) 67, 558, 801, 878, 918, 938
DpnI GATC 3 cut(s) 696, 780, 948
DpnII GATC 3 cut(s) 694, 778, 946
EaeI YGGCCR 2 cut(s) 294, 638
Eam1104I CTCTTC 3 cut(s) 351, 699, 882
EarI CTCTTC 3 cut(s) 351, 699, 882
Eco130I CCWWGG 2 cut(s) 297, 514
Eco57I CTGAAG 1 cut(s) 684
EcoRII CCWGG 2 cut(s) 137, 226
EcoT14I CCWWGG 2 cut(s) 297, 514
EcoT22I ATGCAT 1 cut(s) 287
ErhI CCWWGG 2 cut(s) 297, 514
FaeI CATG 3 cut(s) 779, 838, 869
FatI CATG 3 cut(s) 775, 834, 865
FauI CCCGC 1 cut(s) 21
FbaI TGATCA 1 cut(s) 694
Fnu4HI GCNGC 9 cut(s) 51, 590, 593, 638, 767, 785, 870, 982, 985
FokI GGATG 3 cut(s) 314, 575, 662
Fsp4HI GCNGC 9 cut(s) 51, 590, 593, 638, 767, 785, 870, 982, 985
FspBI CTAG 1 cut(s) 150
GluI GCNGC 9 cut(s) 51, 590, 593, 638, 767, 785, 870, 982, 985
HaeIII GGCC 3 cut(s) 296, 483, 640
HapII CCGG 1 cut(s) 494
HgaI GACGC 1 cut(s) 84
Hin1II CATG 3 cut(s) 779, 838, 869
HindIII AAGCTT 1 cut(s) 935
HinfI GANTC 3 cut(s) 306, 362, 999
HpaII CCGG 1 cut(s) 494
HphI GGTGA 2 cut(s) 821, 872
Hpy166II GTNNAC 3 cut(s) 8, 610, 863
Hpy188I TCNGA 5 cut(s) 256, 352, 919, 932, 1004
Hpy188III TCNNGA 2 cut(s) 160, 692
Hpy8I GTNNAC 3 cut(s) 8, 610, 863
HpyAV CCTTC 2 cut(s) 139, 499
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4IV ACGT 1 cut(s) 10
HpyCH4V TGCA 9 cut(s) 98, 285, 368, 589, 766, 773, 784, 872, 975
HpyF10VI GCNNNNNNNGC 6 cut(s) 117, 489, 601, 766, 902, 981
HpyF3I CTNAG 6 cut(s) 67, 558, 801, 878, 918, 938
HpySE526I ACGT 1 cut(s) 10
Hsp92II CATG 3 cut(s) 779, 838, 869
Ksp22I TGATCA 1 cut(s) 694
Kzo9I GATC 3 cut(s) 694, 778, 946
LmnI GCTCC 1 cut(s) 496
LpnPI CCDG 9 cut(s) 66, 87, 124, 151, 213, 240, 507, 783, 843
Lsp1109I GCAGC 6 cut(s) 37, 601, 778, 796, 856, 996
LweI GCATC 3 cut(s) 301, 753, 828
MaeI CTAG 1 cut(s) 150
MaeII ACGT 1 cut(s) 10
MaeIII GTNAC 2 cut(s) 157, 941
MalI GATC 3 cut(s) 696, 780, 948
MbiI CCGCTC 1 cut(s) 28
MboI GATC 3 cut(s) 694, 778, 946
MboII GAAGA 8 cut(s) 190, 365, 368, 461, 482, 682, 716, 899
MlsI TGGCCA 1 cut(s) 296
MluCI AATT 7 cut(s) 133, 173, 207, 241, 273, 290, 795
MluNI TGGCCA 1 cut(s) 296
MlyI GAGTC 1 cut(s) 371
MmeI TCCRAC 2 cut(s) 52, 426
MnlI CCTC 6 cut(s) 352, 567, 670, 700, 715, 895
Mox20I TGGCCA 1 cut(s) 296
Mph1103I ATGCAT 1 cut(s) 287
MscI TGGCCA 1 cut(s) 296
MseI TTAA 6 cut(s) 210, 288, 789, 815, 843, 1018
MslI CAYNNNNRTG 1 cut(s) 753
Msp20I TGGCCA 1 cut(s) 296
MspA1I CMGCKG 1 cut(s) 592
MspI CCGG 1 cut(s) 494
MspR9I CCNGG 3 cut(s) 139, 228, 494
Mva1269I GAATGC 1 cut(s) 111
MvaI CCWGG 2 cut(s) 139, 228
MwoI GCNNNNNNNGC 6 cut(s) 117, 489, 601, 766, 902, 981
NciI CCSGG 1 cut(s) 494
NdeII GATC 3 cut(s) 694, 778, 946
NlaIII CATG 3 cut(s) 779, 838, 869
NlaIV GGNNCC 1 cut(s) 498
NmuCI GTSAC 2 cut(s) 157, 941
NsiI ATGCAT 1 cut(s) 287
NspI RCATGY 1 cut(s) 869
PaqCI CACCTGC 1 cut(s) 848
PctI GAATGC 1 cut(s) 111
PfeI GAWTC 2 cut(s) 306, 999
PkrI GCNGC 9 cut(s) 52, 591, 594, 639, 768, 786, 871, 983, 986
PleI GAGTC 1 cut(s) 370
PpsI GAGTC 1 cut(s) 370
PshBI ATTAAT 1 cut(s) 210
Psp6I CCWGG 2 cut(s) 137, 226
PspGI CCWGG 2 cut(s) 137, 226
PspN4I GGNNCC 1 cut(s) 498
PspPI GGNCC 1 cut(s) 481
PstI CTGCAG 1 cut(s) 786
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
RseI CAYNNNNRTG 1 cut(s) 753
SaqAI TTAA 6 cut(s) 210, 288, 789, 815, 843, 1018
SatI GCNGC 9 cut(s) 51, 590, 593, 638, 767, 785, 870, 982, 985
Sau3AI GATC 3 cut(s) 694, 778, 946
Sau96I GGNCC 1 cut(s) 481
ScaI AGTACT 1 cut(s) 154
SchI GAGTC 1 cut(s) 371
ScrFI CCNGG 3 cut(s) 139, 228, 494
SetI ASST 9 cut(s) 13, 149, 380, 664, 711, 789, 862, 917, 939
SfaNI GCATC 3 cut(s) 301, 753, 828
SfcI CTRYAG 1 cut(s) 782
SmiMI CAYNNNNRTG 1 cut(s) 753
Sse9I AATT 7 cut(s) 133, 173, 207, 241, 273, 290, 795
SsiI CCGC 5 cut(s) 28, 592, 637, 964, 981
SspMI CTAG 1 cut(s) 150
StyD4I CCNGG 3 cut(s) 137, 226, 492
StyI CCWWGG 2 cut(s) 297, 514
TaaI ACNGT 1 cut(s) 157
TaiI ACGT 1 cut(s) 13
TaqI TCGA 3 cut(s) 14, 309, 579
TasI AATT 7 cut(s) 133, 173, 207, 241, 273, 290, 795
TatI WGTACW 1 cut(s) 152
TauI GCSGC 3 cut(s) 595, 640, 984
TfiI GAWTC 2 cut(s) 306, 999
Tru1I TTAA 6 cut(s) 210, 288, 789, 815, 843, 1018
Tru9I TTAA 6 cut(s) 210, 288, 789, 815, 843, 1018
TscAI CASTG 1 cut(s) 85
TseFI GTSAC 2 cut(s) 157, 941
TseI GCWGC 6 cut(s) 50, 589, 766, 784, 869, 984
Tsp45I GTSAC 2 cut(s) 157, 941
TspDTI ATGAA 3 cut(s) 579, 698, 939
TspGWI ACGGA 2 cut(s) 362, 662
TspRI CASTG 1 cut(s) 85
VspI ATTAAT 1 cut(s) 210
XceI RCATGY 1 cut(s) 869
XspI CTAG 1 cut(s) 150
ZrmI AGTACT 1 cut(s) 154
Zsp2I ATGCAT 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.