RLG00000001466
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000615
Physical Location & Seq
Forward (+)
15915430 .. 15918218
2789 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001466

Sequence Viewer

Length: 978 bp
ATGGATGGAAGTTCGATTGATGTTGTCAGGGAACATCCCGTTTCTAATGCTGCTCGCACTGTGGTCTTAGTTGGACGCACTGGTAATGGAAAGAGTGCAACAGGCAACAGCATCCTTGGCAAAAGAGCCTTCATTTCCAAGCGTAGCTCTAGGGGTGTCACCACCACTACTGAATTGAAGACTGCTATCATGAGAGATGGACAACAAATTAACATTATAGACACTCCTGGTCTTTTTGATAGTTCTGTCAAATCAGACGTTATTAGCAAAGAAATTGTCCAATGCATTAAATTGGCCAAGGATGGAATCCAGGCTATTCTTGTGATTCTCTCAACTAGAACTCGGTTTTCACAAGAAGAGCAATCTGCAATCCTTGGCTTGCAAGCTCTATTTGGAAGTAAAATATTTGACTATATGATTGTTGTCTTTTCGGGAGGAGATGAGCTTGAAGAAAATGATGAGACGTTGGAAGATTATTTGGGCGGTCATGATTGCCCGGAGCCTTTGAAGGAAATCCTTGGTCTGTGTGGAAATCGCTGTGTGCTTTTTGATAACAAGACTAAGGATGAAAGCAAGAGGGTCGAACAGGTGCAGCGGCTTCTCTCGCTTGTAAACTTGGTTATAGCACAGAATGGTGGGCGGCCATACACGGATGAGATATTTGCTGAAGTAAAGGTATTTGTTGTTTTCTCTTTCATTTATAAAATATCTCATTTGAATGAGCAGATGCAACGTGCACATGATCTGCAGCTTAAACGAATTACTGAGATGATTGAGTTAAACATGAGAGAGAAAACCATGATGCTTGAACAAATGTTAGCAGATGAATGTGCTGCACGACTAAGAGCAGAAGAGACAGCCCAAGAGGCTCAACAAAGGCTATGTGGTAAGGAAATCGTGAAGTTTGCGGCAACTGGTTGCGACGTCTGGTTGATAATGGTTGTGGTATCCTGTATTAATGTGAAAGATGCTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

326

Amino Acids

36.07

Weight (kDa)

5.47

Isoelectric Point (pI)

40.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RsgA_GTPase PF03193 18 - 78 8.6e-07 RsgA GTPase
AIG1 PF04548 19 - 225 1.3e-75 AIG1 family
MMR_HSR1 PF01926 20 - 120 2e-10 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000615)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33970 AT1G33970 AT1G33970 AT1G33970 AT1G33970
fragaria_vesca FvH4_5g32530 FvH4_5g32530
malus_domestica MD15G1403700.v1.1
prunus_persica Prupe.1G549700_v2.0.a1 Prupe.1G549700_v2.0.a1
pyrus_communis pycom15g36100
rosa_chinensis RchiOBHm_Chr7g0226331 RchiOBHm_Chr7g0229101 RchiOBHm_Chr7g0229111 RchiOBHm_Chr7g0229141 RchiOBHm_Chr7g0229161 RchiOBHm_Chr7g0229171 RchiOBHm_Chr7g0229211 RchiOBHm_Chr7g0229241 RchiOBHm_Chr7g0229381 RchiOBHm_Chr7g0229761 RchiOBHm_Chr7g0229911
rosa_laevigata RLG00000000796 RLG00000001464 RLG00000001466 RLG00000001469 RLG00000001523 RLG00000001526 RLG00000001529 RLG00000001530 RLG00000001749 RLG00000001913 RLG00000002114 RLG00000002115 RLG00000023248 RLG00000023250
rosa_multiflora Rmu_co8281135.1_g000001 Rmu_sc0000271.1_g000002 Rmu_sc0000271.1_g000007 Rmu_sc0000271.1_g000014 Rmu_sc0000693.1_g000012 Rmu_sc0000693.1_g000015 Rmu_sc0000693.1_g000023 Rmu_sc0001044.1_g000005 Rmu_sc0006689.1_g000007 Rmu_sc0012733.1_g000005
rosa_roxburghii Rroxscaffold_3G00230540 Rroxscaffold_3G00230590 Rroxscaffold_3G00230600 Rroxscaffold_3G00230700 Rroxscaffold_3G00230710 Rroxscaffold_3G00232980 Rroxscaffold_3G00237610
rosa_rugosa Rorug07G0203800 Rorug07G0203900 Rorug07G0256100 Rorug07G0256400 Rorug07G0256400 Rorug07G0256400 Rorug07G0256500 Rorug07G0256600 Rorug07G0256600 Rorug07G0257100 Rorug07G0257200 Rorug07G0257300 Rorug07G0257400
rosa_samantha Rh7DG401100 Rh7DG401300 Rh7DG401900 Rh7DG402100 Rh7DG402300 Rh7DG402700
rosa_wichuraiana Rw0G001910 Rw0G001930 Rw0G001940 Rw7G033790 Rw7G033810 Rw7G033840 Rw7G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 702
AatII GACGTC 1 cut(s) 927
AciI CCGC 4 cut(s) 483, 595, 640, 908
AcoI YGGCCR 2 cut(s) 294, 641
AcuI CTGAAG 1 cut(s) 687
AcyI GRCGYC 1 cut(s) 924
AgsI TTSAA 5 cut(s) 178, 449, 508, 718, 809
AjnI CCWGG 2 cut(s) 226, 309
AluBI AGCT 4 cut(s) 147, 386, 445, 751
AluI AGCT 4 cut(s) 147, 386, 445, 751
Alw21I GWGCWC 1 cut(s) 739
Alw26I GTCTC 2 cut(s) 455, 848
Alw44I GTGCAC 1 cut(s) 735
AoxI GGCC 2 cut(s) 294, 641
ApaLI GTGCAC 1 cut(s) 735
ApeKI GCWGC 4 cut(s) 50, 592, 748, 833
ArsI GACNNNNNNTTYG 2 cut(s) 261, 293
AseI ATTAAT 1 cut(s) 957
AsuC2I CCSGG 1 cut(s) 497
AsuHPI GGTGA 1 cut(s) 151
BaeGI GKGCMC 1 cut(s) 739
BalI TGGCCA 1 cut(s) 296
BbsI GAAGAC 1 cut(s) 185
Bbv12I GWGCWC 1 cut(s) 739
BbvI GCAGC 4 cut(s) 37, 604, 760, 820
BccI CCATC 2 cut(s) 191, 296
BcgI CGANNNNNNTGC 2 cut(s) 562, 596
BciT130I CCWGG 2 cut(s) 228, 311
BciVI GTATCC 1 cut(s) 958
BcnI CCSGG 1 cut(s) 497
BcoDI GTCTC 2 cut(s) 455, 848
BfaI CTAG 2 cut(s) 150, 336
BfmI CTRYAG 1 cut(s) 746
BfuI GTATCC 1 cut(s) 958
BglI GCCNNNNNGGC 1 cut(s) 866
BisI GCNGC 7 cut(s) 51, 593, 596, 641, 749, 834, 909
BlsI GCNGC 7 cut(s) 52, 594, 597, 642, 750, 835, 910
Bme1390I CCNGG 3 cut(s) 228, 311, 497
BmiI GGNNCC 1 cut(s) 501
BmrFI CCNGG 3 cut(s) 228, 311, 497
BmsI GCATC 4 cut(s) 120, 717, 792, 958
BpiI GAAGAC 1 cut(s) 185
BpuMI CCSGG 1 cut(s) 497
BsaHI GRCGYC 1 cut(s) 924
BsaJI CCNNGG 4 cut(s) 115, 297, 373, 517
Bse1I ACTGG 2 cut(s) 85, 919
BseBI CCWGG 2 cut(s) 228, 311
BseDI CCNNGG 4 cut(s) 115, 297, 373, 517
BseGI GGATG 6 cut(s) 10, 34, 111, 307, 571, 658
BseMII CTCAG 1 cut(s) 756
BseNI ACTGG 2 cut(s) 85, 919
BseRI GAGGAG 1 cut(s) 450
BseSI GKGCMC 1 cut(s) 739
BseXI GCAGC 4 cut(s) 37, 604, 760, 820
BsgI GTGCAG 2 cut(s) 611, 819
BshFI GGCC 2 cut(s) 296, 643
BsiHKAI GWGCWC 1 cut(s) 739
BsiSI CCGG 1 cut(s) 497
BsmAI GTCTC 2 cut(s) 455, 848
BsmBI CGTCTC 1 cut(s) 455
BsnI GGCC 2 cut(s) 296, 643
Bsp1286I GDGCHC 1 cut(s) 739
Bsp143I GATC 1 cut(s) 742
BspACI CCGC 4 cut(s) 483, 595, 640, 908
BspANI GGCC 2 cut(s) 296, 643
BspCNI CTCAG 1 cut(s) 757
BspHI TCATGA 2 cut(s) 189, 487
BspLI GGNNCC 1 cut(s) 501
BspMAI CTGCAG 1 cut(s) 750
BspQI GCTCTTC 1 cut(s) 351
BsrI ACTGG 2 cut(s) 85, 919
BssECI CCNNGG 4 cut(s) 115, 297, 373, 517
BssMI GATC 1 cut(s) 742
BssNI GRCGYC 1 cut(s) 924
BssT1I CCWWGG 4 cut(s) 115, 297, 373, 517
Bst2UI CCWGG 2 cut(s) 228, 311
Bst4CI ACNGT 1 cut(s) 61
Bst6I CTCTTC 2 cut(s) 351, 846
BstACI GRCGYC 1 cut(s) 924
BstC8I GCNNGC 3 cut(s) 55, 380, 384
BstDEI CTNAG 4 cut(s) 67, 561, 765, 842
BstF5I GGATG 6 cut(s) 10, 34, 111, 307, 571, 658
BstKTI GATC 1 cut(s) 745
BstMAI GTCTC 2 cut(s) 455, 848
BstMBI GATC 1 cut(s) 742
BstMWI GCNNNNNNNGC 3 cut(s) 117, 604, 866
BstNI CCWGG 2 cut(s) 228, 311
BstSCI CCNGG 3 cut(s) 226, 309, 495
BstSFI CTRYAG 1 cut(s) 746
BstSLI GKGCMC 1 cut(s) 739
BstV1I GCAGC 4 cut(s) 37, 604, 760, 820
BstV2I GAAGAC 1 cut(s) 185
BsuI GTATCC 1 cut(s) 958
BsuRI GGCC 2 cut(s) 296, 643
BtsCI GGATG 6 cut(s) 10, 34, 111, 307, 571, 658
BtsIMutI CAGTG 2 cut(s) 57, 78
Cac8I GCNNGC 3 cut(s) 55, 380, 384
CciI TCATGA 2 cut(s) 189, 487
CseI GACGC 1 cut(s) 84
CviAII CATG 5 cut(s) 190, 488, 740, 784, 799
DdeI CTNAG 4 cut(s) 67, 561, 765, 842
DpnI GATC 1 cut(s) 744
DpnII GATC 1 cut(s) 742
EaeI YGGCCR 2 cut(s) 294, 641
Eam1104I CTCTTC 2 cut(s) 351, 846
EarI CTCTTC 2 cut(s) 351, 846
Eco130I CCWWGG 4 cut(s) 115, 297, 373, 517
Eco57I CTGAAG 1 cut(s) 687
EcoRII CCWGG 2 cut(s) 226, 309
EcoT14I CCWWGG 4 cut(s) 115, 297, 373, 517
EcoT22I ATGCAT 1 cut(s) 287
ErhI CCWWGG 4 cut(s) 115, 297, 373, 517
Esp3I CGTCTC 1 cut(s) 455
FaeI CATG 5 cut(s) 193, 491, 743, 787, 802
FatI CATG 5 cut(s) 189, 487, 739, 783, 798
Fnu4HI GCNGC 7 cut(s) 51, 593, 596, 641, 749, 834, 909
FokI GGATG 6 cut(s) 17, 21, 98, 314, 578, 665
Fsp4HI GCNGC 7 cut(s) 51, 593, 596, 641, 749, 834, 909
FspBI CTAG 2 cut(s) 150, 336
GluI GCNGC 7 cut(s) 51, 593, 596, 641, 749, 834, 909
HaeIII GGCC 2 cut(s) 296, 643
HapII CCGG 1 cut(s) 497
HgaI GACGC 1 cut(s) 84
Hin1I GRCGYC 1 cut(s) 924
Hin1II CATG 5 cut(s) 193, 491, 743, 787, 802
HinfI GANTC 2 cut(s) 306, 325
HpaII CCGG 1 cut(s) 497
HphI GGTGA 1 cut(s) 151
Hpy166II GTNNAC 2 cut(s) 613, 737
Hpy188I TCNGA 1 cut(s) 256
Hpy188III TCNNGA 4 cut(s) 190, 432, 488, 898
Hpy8I GTNNAC 2 cut(s) 613, 737
Hpy99I CGWCG 1 cut(s) 926
HpyAV CCTTC 2 cut(s) 139, 502
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4IV ACGT 4 cut(s) 258, 464, 733, 924
HpyCH4V TGCA 9 cut(s) 98, 285, 368, 382, 592, 730, 737, 748, 836
HpyF10VI GCNNNNNNNGC 3 cut(s) 117, 604, 866
HpyF3I CTNAG 4 cut(s) 67, 561, 765, 842
HpySE526I ACGT 4 cut(s) 258, 464, 733, 924
Hsp92I GRCGYC 1 cut(s) 924
Hsp92II CATG 5 cut(s) 193, 491, 743, 787, 802
Kzo9I GATC 1 cut(s) 742
LguI GCTCTTC 1 cut(s) 351
LmnI GCTCC 1 cut(s) 499
Lsp1109I GCAGC 4 cut(s) 37, 604, 760, 820
LweI GCATC 4 cut(s) 120, 717, 792, 958
MaeI CTAG 2 cut(s) 150, 336
MaeII ACGT 4 cut(s) 258, 464, 733, 924
MaeIII GTNAC 1 cut(s) 157
MalI GATC 1 cut(s) 744
MboI GATC 1 cut(s) 742
MboII GAAGA 5 cut(s) 190, 368, 461, 482, 863
MhlI GDGCHC 1 cut(s) 739
MlsI TGGCCA 1 cut(s) 296
MluCI AATT 5 cut(s) 173, 207, 273, 290, 759
MluNI TGGCCA 1 cut(s) 296
MmeI TCCRAC 2 cut(s) 52, 447
MnlI CCTC 3 cut(s) 428, 570, 859
Mox20I TGGCCA 1 cut(s) 296
Mph1103I ATGCAT 1 cut(s) 287
MscI TGGCCA 1 cut(s) 296
MseI TTAA 5 cut(s) 210, 288, 753, 779, 957
MslI CAYNNNNRTG 1 cut(s) 717
Msp20I TGGCCA 1 cut(s) 296
MspA1I CMGCKG 1 cut(s) 595
MspI CCGG 1 cut(s) 497
MspR9I CCNGG 3 cut(s) 228, 311, 497
MvaI CCWGG 2 cut(s) 228, 311
MwoI GCNNNNNNNGC 3 cut(s) 117, 604, 866
NciI CCSGG 1 cut(s) 497
NdeII GATC 1 cut(s) 742
NlaIII CATG 5 cut(s) 193, 491, 743, 787, 802
NlaIV GGNNCC 1 cut(s) 501
NmuCI GTSAC 1 cut(s) 157
NsiI ATGCAT 1 cut(s) 287
PagI TCATGA 2 cut(s) 189, 487
PciSI GCTCTTC 1 cut(s) 351
PfeI GAWTC 2 cut(s) 306, 325
PkrI GCNGC 7 cut(s) 52, 594, 597, 642, 750, 835, 910
PshBI ATTAAT 1 cut(s) 957
PsiI TTATAA 1 cut(s) 702
Psp6I CCWGG 2 cut(s) 226, 309
PspGI CCWGG 2 cut(s) 226, 309
PspN4I GGNNCC 1 cut(s) 501
PstI CTGCAG 1 cut(s) 750
RseI CAYNNNNRTG 1 cut(s) 717
SapI GCTCTTC 1 cut(s) 351
SaqAI TTAA 5 cut(s) 210, 288, 753, 779, 957
SatI GCNGC 7 cut(s) 51, 593, 596, 641, 749, 834, 909
Sau3AI GATC 1 cut(s) 742
ScrFI CCNGG 3 cut(s) 228, 311, 497
SduI GDGCHC 1 cut(s) 739
SfaNI GCATC 4 cut(s) 120, 717, 792, 958
SfcI CTRYAG 1 cut(s) 746
SmiMI CAYNNNNRTG 1 cut(s) 717
Sse9I AATT 5 cut(s) 173, 207, 273, 290, 759
SsiI CCGC 4 cut(s) 483, 595, 640, 908
SspI AATATT 1 cut(s) 405
SspMI CTAG 2 cut(s) 150, 336
StyD4I CCNGG 3 cut(s) 226, 309, 495
StyI CCWWGG 4 cut(s) 115, 297, 373, 517
TaaI ACNGT 1 cut(s) 61
TaiI ACGT 4 cut(s) 261, 467, 736, 927
TaqI TCGA 2 cut(s) 14, 582
TasI AATT 5 cut(s) 173, 207, 273, 290, 759
TauI GCSGC 3 cut(s) 598, 643, 911
TfiI GAWTC 2 cut(s) 306, 325
Tru1I TTAA 5 cut(s) 210, 288, 753, 779, 957
Tru9I TTAA 5 cut(s) 210, 288, 753, 779, 957
TscAI CASTG 2 cut(s) 64, 85
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 4 cut(s) 50, 592, 748, 833
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 4 cut(s) 121, 582, 685, 840
TspGWI ACGGA 1 cut(s) 665
TspRI CASTG 2 cut(s) 64, 85
VneI GTGCAC 1 cut(s) 735
VspI ATTAAT 1 cut(s) 957
XspI CTAG 2 cut(s) 150, 336
ZraI GACGTC 1 cut(s) 925
Zsp2I ATGCAT 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.