Rorug07G0256500
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000615
Physical Location & Seq
Reverse (-)
23970456 .. 23985540
15085 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0256500.1

Sequence Viewer

Length: 594 bp
ATGGCTGATATTACAGTGTTCATCACCGCCACGGTTGGCTCCAGATCAGGATCAGCGGTGCAAATGAACACGTCGACTGAAGGAAGTTTGTCATCTTCCGGCAATCTCTCCGGGAACACAGTTCGAGAGACTGGCCTCCACCGATATGCCTGGGTTGCTGATAACCTGCTTGATCAAGCTACTAGCAGTTTAGAAATTTTCATACTTTGTTCTCAGACCCTTAGAAGCAAGCAGCTAAATCAATGGCTGTGGGACATTATGGATGAGTTTGTGTACCAGTTTCAGAGCTTCTGTCAGTATAGGGCTAAGATGAAGAACAAGACTGAGCAGGAGACTACTTTTCTCAGACAGTTTGATCAAGGTGTGGTGCACAGAGATGTTAAGCCCGGAAACTTCCTCTTCTCTCAGAAGCTAAGCAAAGGTTACCTGATTGATTTCAACCTTGCCATGGTTTGGCAAACAGCTTCTCTGTGCCATTTGGTTCACACAGCAGCTCTTCTTGCTGCGCCCCTCACAAAAAACCCCAATATTGTGAGTGTTCTTGGAACTTCTGGACTGTACATGTCAGGATCATATGTTGAGCAAAGACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

197

Amino Acids

22.01

Weight (kDa)

7.73

Isoelectric Point (pI)

39.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Paf67 PF10255 79 - 120 7e-16 RNA polymerase I-associated factor PAF67
Pkinase PF00069 118 - 168 9.2e-06 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000615)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33970 AT1G33970 AT1G33970 AT1G33970 AT1G33970
fragaria_vesca FvH4_5g32530 FvH4_5g32530
malus_domestica MD15G1403700.v1.1
prunus_persica Prupe.1G549700_v2.0.a1 Prupe.1G549700_v2.0.a1
pyrus_communis pycom15g36100
rosa_chinensis RchiOBHm_Chr7g0226331 RchiOBHm_Chr7g0229101 RchiOBHm_Chr7g0229111 RchiOBHm_Chr7g0229141 RchiOBHm_Chr7g0229161 RchiOBHm_Chr7g0229171 RchiOBHm_Chr7g0229211 RchiOBHm_Chr7g0229241 RchiOBHm_Chr7g0229381 RchiOBHm_Chr7g0229761 RchiOBHm_Chr7g0229911
rosa_laevigata RLG00000000796 RLG00000001464 RLG00000001466 RLG00000001469 RLG00000001523 RLG00000001526 RLG00000001529 RLG00000001530 RLG00000001749 RLG00000001913 RLG00000002114 RLG00000002115 RLG00000023248 RLG00000023250
rosa_multiflora Rmu_co8281135.1_g000001 Rmu_sc0000271.1_g000002 Rmu_sc0000271.1_g000007 Rmu_sc0000271.1_g000014 Rmu_sc0000693.1_g000012 Rmu_sc0000693.1_g000015 Rmu_sc0000693.1_g000023 Rmu_sc0001044.1_g000005 Rmu_sc0006689.1_g000007 Rmu_sc0012733.1_g000005
rosa_roxburghii Rroxscaffold_3G00230540 Rroxscaffold_3G00230590 Rroxscaffold_3G00230600 Rroxscaffold_3G00230700 Rroxscaffold_3G00230710 Rroxscaffold_3G00232980 Rroxscaffold_3G00237610
rosa_rugosa Rorug07G0203800 Rorug07G0203900 Rorug07G0256100 Rorug07G0256400 Rorug07G0256400 Rorug07G0256400 Rorug07G0256500 Rorug07G0256600 Rorug07G0256600 Rorug07G0257100 Rorug07G0257200 Rorug07G0257300 Rorug07G0257400
rosa_samantha Rh7DG401100 Rh7DG401300 Rh7DG401900 Rh7DG402100 Rh7DG402300 Rh7DG402700
rosa_wichuraiana Rw0G001910 Rw0G001930 Rw0G001940 Rw7G033790 Rw7G033810 Rw7G033840 Rw7G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 174
AccB7I CCANNNNNTGG 1 cut(s) 453
AccI GTMKAC 1 cut(s) 74
AciI CCGC 2 cut(s) 27, 56
AclWI GGATC 2 cut(s) 58, 577
AcsI RAATTY 1 cut(s) 195
AcuI CTGAAG 1 cut(s) 99
AfaI GTAC 2 cut(s) 275, 560
AfiI CCNNNNNNNGG 2 cut(s) 448, 453
AflIII ACRYGT 2 cut(s) 69, 561
AgsI TTSAA 1 cut(s) 439
AjiI CACGTC 1 cut(s) 72
AjnI CCWGG 1 cut(s) 149
AluBI AGCT 6 cut(s) 179, 235, 288, 412, 464, 494
AluI AGCT 6 cut(s) 179, 235, 288, 412, 464, 494
Alw21I GWGCWC 1 cut(s) 372
Alw26I GTCTC 2 cut(s) 122, 326
Alw44I GTGCAC 1 cut(s) 368
AlwI GGATC 2 cut(s) 58, 577
AoxI GGCC 1 cut(s) 133
ApaLI GTGCAC 1 cut(s) 368
ApeKI GCWGC 3 cut(s) 232, 491, 503
ApoI RAATTY 1 cut(s) 195
AspLEI GCGC 1 cut(s) 508
AsuC2I CCSGG 2 cut(s) 112, 387
AsuHPI GGTGA 1 cut(s) 16
BaeGI GKGCMC 1 cut(s) 372
Bbv12I GWGCWC 1 cut(s) 372
BbvI GCAGC 3 cut(s) 244, 490, 503
BciT130I CCWGG 1 cut(s) 151
BclI TGATCA 2 cut(s) 172, 355
BcnI CCSGG 2 cut(s) 112, 387
BcoDI GTCTC 2 cut(s) 122, 326
BfaI CTAG 1 cut(s) 183
BfuAI ACCTGC 1 cut(s) 174
BisI GCNGC 3 cut(s) 233, 492, 504
BlpI GCTNAGC 1 cut(s) 413
BlsI GCNGC 3 cut(s) 234, 493, 505
Bme1390I CCNGG 3 cut(s) 112, 151, 387
BmgBI CACGTC 1 cut(s) 72
BmiI GGNNCC 1 cut(s) 40
BmrFI CCNGG 3 cut(s) 112, 151, 387
BpmI CTGGAG 1 cut(s) 25
Bpu1102I GCTNAGC 1 cut(s) 413
BpuMI CCSGG 2 cut(s) 112, 387
BsaBI GATNNNNATC 1 cut(s) 49
BsaJI CCNNGG 3 cut(s) 30, 150, 447
Bsc4I CCNNNNNNNGG 2 cut(s) 448, 453
Bse1I ACTGG 2 cut(s) 136, 277
Bse8I GATNNNNATC 1 cut(s) 49
BseBI CCWGG 1 cut(s) 151
BseDI CCNNGG 3 cut(s) 30, 150, 447
BseGI GGATG 1 cut(s) 268
BseJI GATNNNNATC 1 cut(s) 49
BseLI CCNNNNNNNGG 2 cut(s) 448, 453
BseMII CTCAG 4 cut(s) 227, 315, 358, 419
BseNI ACTGG 2 cut(s) 136, 277
BseSI GKGCMC 1 cut(s) 372
BseXI GCAGC 3 cut(s) 244, 490, 503
BshFI GGCC 1 cut(s) 135
BsiHKAI GWGCWC 1 cut(s) 372
BsiSI CCGG 3 cut(s) 99, 111, 387
BslFI GGGAC 1 cut(s) 266
BslI CCNNNNNNNGG 2 cut(s) 448, 453
BsmAI GTCTC 2 cut(s) 122, 326
BsmFI GGGAC 1 cut(s) 266
BsnI GGCC 1 cut(s) 135
Bsp1286I GDGCHC 1 cut(s) 372
Bsp1407I TGTACA 1 cut(s) 558
Bsp143I GATC 5 cut(s) 44, 50, 172, 355, 569
Bsp1720I GCTNAGC 1 cut(s) 413
Bsp19I CCATGG 1 cut(s) 447
BspACI CCGC 2 cut(s) 27, 56
BspANI GGCC 1 cut(s) 135
BspCNI CTCAG 4 cut(s) 226, 316, 357, 418
BspLI GGNNCC 1 cut(s) 40
BspMI ACCTGC 1 cut(s) 174
BspPI GGATC 2 cut(s) 58, 577
BspQI GCTCTTC 1 cut(s) 501
BsrGI TGTACA 1 cut(s) 558
BsrI ACTGG 2 cut(s) 136, 277
BssECI CCNNGG 3 cut(s) 30, 150, 447
BssMI GATC 5 cut(s) 44, 50, 172, 355, 569
BssT1I CCWWGG 1 cut(s) 447
Bst2UI CCWGG 1 cut(s) 151
Bst4CI ACNGT 5 cut(s) 16, 34, 121, 351, 558
Bst6I CTCTTC 2 cut(s) 404, 501
BstAUI TGTACA 1 cut(s) 558
BstC8I GCNNGC 1 cut(s) 230
BstDEI CTNAG 8 cut(s) 213, 221, 306, 324, 344, 405, 413, 591
BstDSI CCRYGG 2 cut(s) 30, 447
BstEII GGTNACC 1 cut(s) 422
BstF5I GGATG 1 cut(s) 268
BstHHI GCGC 1 cut(s) 508
BstKTI GATC 5 cut(s) 47, 53, 175, 358, 572
BstMAI GTCTC 2 cut(s) 122, 326
BstMBI GATC 5 cut(s) 44, 50, 172, 355, 569
BstMWI GCNNNNNNNGC 2 cut(s) 155, 500
BstNI CCWGG 1 cut(s) 151
BstNSI RCATGY 1 cut(s) 565
BstPI GGTNACC 1 cut(s) 422
BstSCI CCNGG 3 cut(s) 110, 149, 385
BstSLI GKGCMC 1 cut(s) 372
BstV1I GCAGC 3 cut(s) 244, 490, 503
BsuRI GGCC 1 cut(s) 135
BtgI CCRYGG 2 cut(s) 30, 447
BtrI CACGTC 1 cut(s) 72
BtsCI GGATG 1 cut(s) 268
BtsIMutI CAGTG 1 cut(s) 21
BveI ACCTGC 1 cut(s) 174
Cac8I GCNNGC 1 cut(s) 230
CfoI GCGC 1 cut(s) 508
Csp6I GTAC 2 cut(s) 274, 559
CspCI CAANNNNNGTGG 2 cut(s) 230, 265
CviAII CATG 2 cut(s) 448, 562
CviQI GTAC 2 cut(s) 274, 559
DdeI CTNAG 8 cut(s) 213, 221, 306, 324, 344, 405, 413, 591
DpnI GATC 5 cut(s) 46, 52, 174, 357, 571
DpnII GATC 5 cut(s) 44, 50, 172, 355, 569
Eam1104I CTCTTC 2 cut(s) 404, 501
EarI CTCTTC 2 cut(s) 404, 501
Eco130I CCWWGG 1 cut(s) 447
Eco57I CTGAAG 1 cut(s) 99
Eco91I GGTNACC 1 cut(s) 422
EcoO65I GGTNACC 1 cut(s) 422
EcoRII CCWGG 1 cut(s) 149
EcoT14I CCWWGG 1 cut(s) 447
ErhI CCWWGG 1 cut(s) 447
FaeI CATG 2 cut(s) 451, 565
FaiI YATR 8 cut(s) 147, 203, 260, 300, 449, 563, 574, 576
FaqI GGGAC 1 cut(s) 266
FatI CATG 2 cut(s) 447, 561
FauNDI CATATG 1 cut(s) 574
FbaI TGATCA 2 cut(s) 172, 355
FblI GTMKAC 1 cut(s) 74
Fnu4HI GCNGC 3 cut(s) 233, 492, 504
FokI GGATG 1 cut(s) 275
Fsp4HI GCNGC 3 cut(s) 233, 492, 504
FspBI CTAG 1 cut(s) 183
GlaI GCGC 1 cut(s) 507
GluI GCNGC 3 cut(s) 233, 492, 504
GsuI CTGGAG 1 cut(s) 25
HaeIII GGCC 1 cut(s) 135
HapII CCGG 3 cut(s) 99, 111, 387
HhaI GCGC 1 cut(s) 508
Hin1II CATG 2 cut(s) 451, 565
Hin6I GCGC 1 cut(s) 506
HinP1I GCGC 1 cut(s) 506
HincII GTYRAC 1 cut(s) 75
HindII GTYRAC 1 cut(s) 75
HpaII CCGG 3 cut(s) 99, 111, 387
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 4 cut(s) 75, 274, 370, 484
Hpy188I TCNGA 4 cut(s) 216, 285, 347, 408
Hpy188III TCNNGA 5 cut(s) 42, 48, 125, 552, 567
Hpy8I GTNNAC 4 cut(s) 75, 274, 370, 484
Hpy99I CGWCG 1 cut(s) 76
HpyAV CCTTC 1 cut(s) 74
HpyCH4III ACNGT 5 cut(s) 16, 34, 121, 351, 558
HpyCH4IV ACGT 1 cut(s) 71
HpyCH4V TGCA 2 cut(s) 61, 370
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 500
HpyF3I CTNAG 8 cut(s) 213, 221, 306, 324, 344, 405, 413, 591
HpySE526I ACGT 1 cut(s) 71
Hsp92II CATG 2 cut(s) 451, 565
HspAI GCGC 1 cut(s) 506
Ksp22I TGATCA 2 cut(s) 172, 355
Kzo9I GATC 5 cut(s) 44, 50, 172, 355, 569
LguI GCTCTTC 1 cut(s) 501
LmnI GCTCC 1 cut(s) 44
Lsp1109I GCAGC 3 cut(s) 244, 490, 503
MaeI CTAG 1 cut(s) 183
MaeII ACGT 1 cut(s) 71
MaeIII GTNAC 1 cut(s) 422
MalI GATC 5 cut(s) 46, 52, 174, 357, 571
MboI GATC 5 cut(s) 44, 50, 172, 355, 569
MboII GAAGA 4 cut(s) 87, 325, 391, 488
MhlI GDGCHC 1 cut(s) 372
MluCI AATT 1 cut(s) 195
MnlI CCTC 3 cut(s) 146, 407, 521
MseI TTAA 1 cut(s) 381
MslI CAYNNNNRTG 2 cut(s) 144, 375
MspA1I CMGCKG 1 cut(s) 56
MspI CCGG 3 cut(s) 99, 111, 387
MspR9I CCNGG 3 cut(s) 112, 151, 387
MvaI CCWGG 1 cut(s) 151
MwoI GCNNNNNNNGC 2 cut(s) 155, 500
NciI CCSGG 2 cut(s) 112, 387
NcoI CCATGG 1 cut(s) 447
NdeI CATATG 1 cut(s) 574
NdeII GATC 5 cut(s) 44, 50, 172, 355, 569
NlaIII CATG 2 cut(s) 451, 565
NlaIV GGNNCC 1 cut(s) 40
NspI RCATGY 1 cut(s) 565
PciI ACATGT 1 cut(s) 561
PciSI GCTCTTC 1 cut(s) 501
PflMI CCANNNNNTGG 1 cut(s) 453
PfoI TCCNGGA 1 cut(s) 110
PkrI GCNGC 3 cut(s) 234, 493, 505
PscI ACATGT 1 cut(s) 561
Psp6I CCWGG 1 cut(s) 149
PspEI GGTNACC 1 cut(s) 422
PspGI CCWGG 1 cut(s) 149
PspN4I GGNNCC 1 cut(s) 40
RsaI GTAC 2 cut(s) 275, 560
RsaNI GTAC 2 cut(s) 274, 559
RseI CAYNNNNRTG 2 cut(s) 144, 375
SalI GTCGAC 1 cut(s) 73
SapI GCTCTTC 1 cut(s) 501
SaqAI TTAA 1 cut(s) 381
SatI GCNGC 3 cut(s) 233, 492, 504
Sau3AI GATC 5 cut(s) 44, 50, 172, 355, 569
ScrFI CCNGG 3 cut(s) 112, 151, 387
SduI GDGCHC 1 cut(s) 372
SmiMI CAYNNNNRTG 2 cut(s) 144, 375
Sse9I AATT 1 cut(s) 195
SsiI CCGC 2 cut(s) 27, 56
SspI AATATT 1 cut(s) 529
SspMI CTAG 1 cut(s) 183
StyD4I CCNGG 3 cut(s) 110, 149, 385
StyI CCWWGG 1 cut(s) 447
TaaI ACNGT 5 cut(s) 16, 34, 121, 351, 558
TaiI ACGT 1 cut(s) 74
TaqI TCGA 2 cut(s) 74, 124
TasI AATT 1 cut(s) 195
TatI WGTACW 1 cut(s) 558
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TscAI CASTG 1 cut(s) 21
TseI GCWGC 3 cut(s) 232, 491, 503
TspDTI ATGAA 4 cut(s) 10, 80, 190, 326
TspRI CASTG 1 cut(s) 21
Van91I CCANNNNNTGG 1 cut(s) 453
VneI GTGCAC 1 cut(s) 368
XapI RAATTY 1 cut(s) 195
XceI RCATGY 1 cut(s) 565
XmiI GTMKAC 1 cut(s) 74
XspI CTAG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.