RLG00000001469
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000615
Physical Location & Seq
Forward (+)
15963476 .. 15966095
2620 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001469

Sequence Viewer

Length: 1014 bp
ATGGATGGAAGTTCAACTGATGTTGTCAGGGAACATCCCATTTCTAATTCTGCTCGCACATTGGTCTTAGTTGGACGCACTGGTAATGGAAAAAGTGCAACAGGCAACAACATTCTTGGTGGAAGAGGCTTCATTTCCAAGCGTAGCTCAAGTGGTGTCACGACCACTACTGAATTGAAGACTGCTATCTTGAGAGATGGACAACAAATTAACGTTATAGACACTCCTGGTCTTTTTGATAGTTCTGTCAAATCAGACGTTATTAGCAAAGAAATTGTCCAATGCATTAAATTGGCCAAGGATGGAATCCATGCTATTCTTGTGGTTTTCTCAACTAGAAATCGCTTTTCACAAGAAGAGAAGTCTTCAATCCTTGGCTTGCAAGCTCTATTTGGAAGTAAAATCTTTGACTATATGATTGTTGTCTTTACGGGAGGAGATGAGTTGGAAGAAAATGATGAGACTTTGGAAGATTATTTGGGCCATGATTGCCCAGAGCCTTTGAAGGAAATCCTTGGTCTGTGTGGAAATCGCTGTGTGCTTTTTGATAACAAGACTAAGGATGAAAGCAAGAGGGTTGAACAGGTGCAGCAGCTTCTCTCGCTTGTAAACTTGGTTACAGAACAGAATGGTGGGCGGCCATACACGGATGAGATATTTGCTGAAGTGAAGAAAGAGGCTATGAAACTTCGTGATCAACAAGAAGAGGTTGCTTCGAAGGGGTATTCAAAACGAGAAATATCTCATTTGAATGAGCTGATGCAGCATGCACATGATTTGCAGCTTAAACGAATTACTGAGATGATAGAGTCAAAAATGAGAGAGAAAACCATGATGCTTGAACAAAAGTTAGCTGATGAACATGCTGCACGACTAAGAGCAGAAGAGACTGCCCAAAAGGCTCAACAAAGGTCTCAGGATGAAATCCGAAAGCTTAAAGATGATCTACAAGCAGAGAAGCAGCGGAAAAACAACGGCAGAGGCAACGGCGGAGGCGGGTGTGCTATTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

338

Amino Acids

37.51

Weight (kDa)

6.06

Isoelectric Point (pI)

45.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIG1 PF04548 20 - 234 6.4e-80 AIG1 family
MMR_HSR1 PF01926 21 - 120 1.1e-08 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000615)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33970 AT1G33970 AT1G33970 AT1G33970 AT1G33970
fragaria_vesca FvH4_5g32530 FvH4_5g32530
malus_domestica MD15G1403700.v1.1
prunus_persica Prupe.1G549700_v2.0.a1 Prupe.1G549700_v2.0.a1
pyrus_communis pycom15g36100
rosa_chinensis RchiOBHm_Chr7g0226331 RchiOBHm_Chr7g0229101 RchiOBHm_Chr7g0229111 RchiOBHm_Chr7g0229141 RchiOBHm_Chr7g0229161 RchiOBHm_Chr7g0229171 RchiOBHm_Chr7g0229211 RchiOBHm_Chr7g0229241 RchiOBHm_Chr7g0229381 RchiOBHm_Chr7g0229761 RchiOBHm_Chr7g0229911
rosa_laevigata RLG00000000796 RLG00000001464 RLG00000001466 RLG00000001469 RLG00000001523 RLG00000001526 RLG00000001529 RLG00000001530 RLG00000001749 RLG00000001913 RLG00000002114 RLG00000002115 RLG00000023248 RLG00000023250
rosa_multiflora Rmu_co8281135.1_g000001 Rmu_sc0000271.1_g000002 Rmu_sc0000271.1_g000007 Rmu_sc0000271.1_g000014 Rmu_sc0000693.1_g000012 Rmu_sc0000693.1_g000015 Rmu_sc0000693.1_g000023 Rmu_sc0001044.1_g000005 Rmu_sc0006689.1_g000007 Rmu_sc0012733.1_g000005
rosa_roxburghii Rroxscaffold_3G00230540 Rroxscaffold_3G00230590 Rroxscaffold_3G00230600 Rroxscaffold_3G00230700 Rroxscaffold_3G00230710 Rroxscaffold_3G00232980 Rroxscaffold_3G00237610
rosa_rugosa Rorug07G0203800 Rorug07G0203900 Rorug07G0256100 Rorug07G0256400 Rorug07G0256400 Rorug07G0256400 Rorug07G0256500 Rorug07G0256600 Rorug07G0256600 Rorug07G0257100 Rorug07G0257200 Rorug07G0257300 Rorug07G0257400
rosa_samantha Rh7DG401100 Rh7DG401300 Rh7DG401900 Rh7DG402100 Rh7DG402300 Rh7DG402700
rosa_wichuraiana Rw0G001910 Rw0G001930 Rw0G001940 Rw7G033790 Rw7G033810 Rw7G033840 Rw7G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 637, 964, 990, 996
AclI AACGTT 1 cut(s) 213
AcoI YGGCCR 2 cut(s) 294, 638
AcuI CTGAAG 1 cut(s) 684
AgsI TTSAA 8 cut(s) 15, 178, 369, 505, 581, 729, 751, 842
AjnI CCWGG 1 cut(s) 226
AluBI AGCT 7 cut(s) 147, 386, 595, 757, 784, 854, 934
AluI AGCT 7 cut(s) 147, 386, 595, 757, 784, 854, 934
Alw26I GTCTC 3 cut(s) 455, 881, 918
AoxI GGCC 3 cut(s) 294, 481, 638
ApeKI GCWGC 6 cut(s) 589, 592, 763, 781, 866, 961
ArsI GACNNNNNNTTYG 2 cut(s) 261, 293
AspS9I GGNCC 1 cut(s) 481
AsuII TTCGAA 1 cut(s) 716
BalI TGGCCA 1 cut(s) 296
BbsI GAAGAC 2 cut(s) 185, 357
BbvI GCAGC 6 cut(s) 601, 604, 775, 793, 853, 973
BccI CCATC 2 cut(s) 191, 296
BceAI ACGGC 2 cut(s) 991, 1003
BciT130I CCWGG 1 cut(s) 228
BclI TGATCA 1 cut(s) 694
BcoDI GTCTC 3 cut(s) 455, 881, 918
BfaI CTAG 1 cut(s) 336
BglI GCCNNNNNGGC 1 cut(s) 899
BisI GCNGC 7 cut(s) 590, 593, 638, 764, 782, 867, 962
BlsI GCNGC 7 cut(s) 591, 594, 639, 765, 783, 868, 963
Bme1390I CCNGG 1 cut(s) 228
BmgT120I GGNCC 1 cut(s) 481
BmrFI CCNGG 1 cut(s) 228
BmsI GCATC 2 cut(s) 750, 825
BpiI GAAGAC 2 cut(s) 185, 357
Bpu14I TTCGAA 1 cut(s) 716
BpuEI CTTGAG 2 cut(s) 133, 211
BsaI GGTCTC 1 cut(s) 918
BsaJI CCNNGG 3 cut(s) 297, 373, 514
Bse1I ACTGG 1 cut(s) 85
BseBI CCWGG 1 cut(s) 228
BseDI CCNNGG 3 cut(s) 297, 373, 514
BseGI GGATG 6 cut(s) 10, 34, 307, 568, 655, 925
BseMII CTCAG 2 cut(s) 789, 929
BseNI ACTGG 1 cut(s) 85
BseRI GAGGAG 1 cut(s) 450
BseXI GCAGC 6 cut(s) 601, 604, 775, 793, 853, 973
BsgI GTGCAG 2 cut(s) 608, 852
BshFI GGCC 3 cut(s) 296, 483, 640
BsmAI GTCTC 3 cut(s) 455, 881, 918
BsnI GGCC 3 cut(s) 296, 483, 640
Bso31I GGTCTC 1 cut(s) 918
Bsp119I TTCGAA 1 cut(s) 716
Bsp143I GATC 2 cut(s) 694, 943
BspACI CCGC 4 cut(s) 637, 964, 990, 996
BspANI GGCC 3 cut(s) 296, 483, 640
BspCNI CTCAG 2 cut(s) 790, 928
BspT104I TTCGAA 1 cut(s) 716
BspTNI GGTCTC 1 cut(s) 918
BsrI ACTGG 1 cut(s) 85
BssECI CCNNGG 3 cut(s) 297, 373, 514
BssMI GATC 2 cut(s) 694, 943
BssT1I CCWWGG 3 cut(s) 297, 373, 514
Bst2UI CCWGG 1 cut(s) 228
Bst6I CTCTTC 4 cut(s) 118, 351, 699, 879
BstBI TTCGAA 1 cut(s) 716
BstC8I GCNNGC 4 cut(s) 55, 380, 384, 768
BstDEI CTNAG 5 cut(s) 67, 558, 798, 875, 915
BstF5I GGATG 6 cut(s) 10, 34, 307, 568, 655, 925
BstKTI GATC 2 cut(s) 697, 946
BstMAI GTCTC 3 cut(s) 455, 881, 918
BstMBI GATC 2 cut(s) 694, 943
BstMWI GCNNNNNNNGC 4 cut(s) 489, 601, 763, 899
BstNI CCWGG 1 cut(s) 228
BstNSI RCATGY 2 cut(s) 770, 866
BstSCI CCNGG 1 cut(s) 226
BstV1I GCAGC 6 cut(s) 601, 604, 775, 793, 853, 973
BstV2I GAAGAC 2 cut(s) 185, 357
BsuRI GGCC 3 cut(s) 296, 483, 640
BtsCI GGATG 6 cut(s) 10, 34, 307, 568, 655, 925
BtsIMutI CAGTG 1 cut(s) 78
Cac8I GCNNGC 4 cut(s) 55, 380, 384, 768
Cfr13I GGNCC 1 cut(s) 481
CseI GACGC 1 cut(s) 84
CviAII CATG 6 cut(s) 311, 485, 767, 773, 832, 863
DdeI CTNAG 5 cut(s) 67, 558, 798, 875, 915
DpnI GATC 2 cut(s) 696, 945
DpnII GATC 2 cut(s) 694, 943
EaeI YGGCCR 2 cut(s) 294, 638
Eam1104I CTCTTC 4 cut(s) 118, 351, 699, 879
EarI CTCTTC 4 cut(s) 118, 351, 699, 879
EciI GGCGGA 1 cut(s) 1005
Eco130I CCWWGG 3 cut(s) 297, 373, 514
Eco31I GGTCTC 1 cut(s) 918
Eco57I CTGAAG 1 cut(s) 684
EcoRII CCWGG 1 cut(s) 226
EcoT14I CCWWGG 3 cut(s) 297, 373, 514
EcoT22I ATGCAT 1 cut(s) 287
ErhI CCWWGG 3 cut(s) 297, 373, 514
FaeI CATG 6 cut(s) 314, 488, 770, 776, 835, 866
FatI CATG 6 cut(s) 310, 484, 766, 772, 831, 862
FauI CCCGC 1 cut(s) 989
FbaI TGATCA 1 cut(s) 694
Fnu4HI GCNGC 7 cut(s) 590, 593, 638, 764, 782, 867, 962
FokI GGATG 6 cut(s) 17, 21, 314, 575, 662, 932
Fsp4HI GCNGC 7 cut(s) 590, 593, 638, 764, 782, 867, 962
FspBI CTAG 1 cut(s) 336
GluI GCNGC 7 cut(s) 590, 593, 638, 764, 782, 867, 962
HaeIII GGCC 3 cut(s) 296, 483, 640
HgaI GACGC 1 cut(s) 84
Hin1II CATG 6 cut(s) 314, 488, 770, 776, 835, 866
HindIII AAGCTT 1 cut(s) 932
HinfI GANTC 2 cut(s) 306, 809
Hpy166II GTNNAC 1 cut(s) 610
Hpy188I TCNGA 2 cut(s) 256, 929
Hpy188III TCNNGA 4 cut(s) 160, 190, 692, 917
Hpy8I GTNNAC 1 cut(s) 610
HpyAV CCTTC 2 cut(s) 499, 712
HpyCH4IV ACGT 2 cut(s) 213, 258
HpyCH4V TGCA 8 cut(s) 98, 285, 382, 589, 763, 770, 781, 869
HpyF10VI GCNNNNNNNGC 4 cut(s) 489, 601, 763, 899
HpyF3I CTNAG 5 cut(s) 67, 558, 798, 875, 915
HpySE526I ACGT 2 cut(s) 213, 258
Hsp92II CATG 6 cut(s) 314, 488, 770, 776, 835, 866
Ksp22I TGATCA 1 cut(s) 694
Kzo9I GATC 2 cut(s) 694, 943
LpnPI CCDG 8 cut(s) 13, 66, 87, 213, 240, 507, 569, 902
Lsp1109I GCAGC 6 cut(s) 601, 604, 775, 793, 853, 973
LweI GCATC 2 cut(s) 750, 825
MaeI CTAG 1 cut(s) 336
MaeII ACGT 2 cut(s) 213, 258
MaeIII GTNAC 2 cut(s) 157, 616
MalI GATC 2 cut(s) 696, 945
MboI GATC 2 cut(s) 694, 943
MboII GAAGA 9 cut(s) 135, 190, 357, 368, 461, 482, 682, 716, 896
MlsI TGGCCA 1 cut(s) 296
MluCI AATT 6 cut(s) 46, 173, 207, 273, 290, 792
MluNI TGGCCA 1 cut(s) 296
MlyI GAGTC 1 cut(s) 818
MmeI TCCRAC 2 cut(s) 52, 426
MnlI CCTC 7 cut(s) 119, 428, 567, 670, 700, 974, 986
Mox20I TGGCCA 1 cut(s) 296
Mph1103I ATGCAT 1 cut(s) 287
MscI TGGCCA 1 cut(s) 296
MseI TTAA 5 cut(s) 210, 288, 786, 936, 1012
MslI CAYNNNNRTG 2 cut(s) 750, 771
Msp20I TGGCCA 1 cut(s) 296
MspA1I CMGCKG 1 cut(s) 964
MspR9I CCNGG 1 cut(s) 228
MvaI CCWGG 1 cut(s) 228
MwoI GCNNNNNNNGC 4 cut(s) 489, 601, 763, 899
NdeII GATC 2 cut(s) 694, 943
NlaIII CATG 6 cut(s) 314, 488, 770, 776, 835, 866
NmuCI GTSAC 1 cut(s) 157
NsiI ATGCAT 1 cut(s) 287
NspI RCATGY 2 cut(s) 770, 866
NspV TTCGAA 1 cut(s) 716
PaeI GCATGC 1 cut(s) 770
PfeI GAWTC 1 cut(s) 306
PkrI GCNGC 7 cut(s) 591, 594, 639, 765, 783, 868, 963
PleI GAGTC 1 cut(s) 817
PpsI GAGTC 1 cut(s) 817
Psp1406I AACGTT 1 cut(s) 213
Psp6I CCWGG 1 cut(s) 226
PspGI CCWGG 1 cut(s) 226
PspPI GGNCC 1 cut(s) 481
RseI CAYNNNNRTG 2 cut(s) 750, 771
SaqAI TTAA 5 cut(s) 210, 288, 786, 936, 1012
SatI GCNGC 7 cut(s) 590, 593, 638, 764, 782, 867, 962
Sau3AI GATC 2 cut(s) 694, 943
Sau96I GGNCC 1 cut(s) 481
SchI GAGTC 1 cut(s) 818
ScrFI CCNGG 1 cut(s) 228
SfaNI GCATC 2 cut(s) 750, 825
SfuI TTCGAA 1 cut(s) 716
SmiMI CAYNNNNRTG 2 cut(s) 750, 771
SmlI CTYRAG 2 cut(s) 148, 190
SmoI CTYRAG 2 cut(s) 148, 190
SphI GCATGC 1 cut(s) 770
Sse9I AATT 6 cut(s) 46, 173, 207, 273, 290, 792
SsiI CCGC 4 cut(s) 637, 964, 990, 996
SspMI CTAG 1 cut(s) 336
StyD4I CCNGG 1 cut(s) 226
StyI CCWWGG 3 cut(s) 297, 373, 514
TaiI ACGT 2 cut(s) 216, 261
TaqI TCGA 1 cut(s) 716
TasI AATT 6 cut(s) 46, 173, 207, 273, 290, 792
TauI GCSGC 1 cut(s) 640
TfiI GAWTC 1 cut(s) 306
Tru1I TTAA 5 cut(s) 210, 288, 786, 936, 1012
Tru9I TTAA 5 cut(s) 210, 288, 786, 936, 1012
TscAI CASTG 1 cut(s) 85
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 6 cut(s) 589, 592, 763, 781, 866, 961
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 5 cut(s) 121, 579, 698, 873, 936
TspGWI ACGGA 1 cut(s) 662
TspRI CASTG 1 cut(s) 85
XceI RCATGY 2 cut(s) 770, 866
XspI CTAG 1 cut(s) 336
Zsp2I ATGCAT 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.