Rorug07G0203800
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000615
Physical Location & Seq
Forward (+)
17837389 .. 17838654
1266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0203800.1

Sequence Viewer

Length: 780 bp
ATGGCCGCCACCTCCCTCTCCATCTCCCCAAACCCTAGCTTCACCACCACCACCTCTCACAAACCCTCTCCCTCTCTCTCAACCCCAACCCACCTCAAATTCCCAACCACCACCGCGACCGCCTCAACCATCCCCGCCAAATCCCTATCCACCCAACACCTCTCCCAAACCCCAACCCCACGCGCCACCTTCTCCACACGCGCCTCCGCCGCAGCCTCCACCACTCCCTCCACCTCCTTCCACGGCCTCTGCTACGTCGTCGGCGACAACATCGACACCGACCAGATCATCCCCGCCGAGTACCTCACCCTCGTCCCCTCCAACCCCTCCGAGTACGAGAAGCTCGGCTCCTACGCCCTCTGCGGCCTCCCGGCGTCCTACTCCACGCGCTTCGTCGACCCCAACGAGACCAAGTCCAAGTACTCCATCGTCATCGGCGGCGCCAACTTCGGCTGCGGCTCGTCCCGCGAGCACGCGCCGGTGGCTCTCGGCGCGGCGGGAGTGGCGGCGGTGGTGGCGGAGTCGTACGCGCGCATCTTCTTCAGGAACTCGGTGGCCACCGGCGAGGTGTACCCGCTGGAATCGGAGACGAGGATTTGTGAGGAGTGCAGGACCGGTGATGTGGTGAGCATTGAGCTGAGCGAGAGCCGTCTGATCAATCACACGACTGGGAAAGAGTATGTGTTGAAGCCGATCGGGGATGCCGGTCCGGTTATCAGAGCCGGTGGGATATTTGCTTATGCTAGAGAGGCTGGGATGATTCCAACTTTGTCTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

259

Amino Acids

27.16

Weight (kDa)

6.3

Isoelectric Point (pI)

35.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aconitase_C PF00694 140 - 188 1.4e-17 Aconitase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000615)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33970 AT1G33970 AT1G33970 AT1G33970 AT1G33970
fragaria_vesca FvH4_5g32530 FvH4_5g32530
malus_domestica MD15G1403700.v1.1
prunus_persica Prupe.1G549700_v2.0.a1 Prupe.1G549700_v2.0.a1
pyrus_communis pycom15g36100
rosa_chinensis RchiOBHm_Chr7g0226331 RchiOBHm_Chr7g0229101 RchiOBHm_Chr7g0229111 RchiOBHm_Chr7g0229141 RchiOBHm_Chr7g0229161 RchiOBHm_Chr7g0229171 RchiOBHm_Chr7g0229211 RchiOBHm_Chr7g0229241 RchiOBHm_Chr7g0229381 RchiOBHm_Chr7g0229761 RchiOBHm_Chr7g0229911
rosa_laevigata RLG00000000796 RLG00000001464 RLG00000001466 RLG00000001469 RLG00000001523 RLG00000001526 RLG00000001529 RLG00000001530 RLG00000001749 RLG00000001913 RLG00000002114 RLG00000002115 RLG00000023248 RLG00000023250
rosa_multiflora Rmu_co8281135.1_g000001 Rmu_sc0000271.1_g000002 Rmu_sc0000271.1_g000007 Rmu_sc0000271.1_g000014 Rmu_sc0000693.1_g000012 Rmu_sc0000693.1_g000015 Rmu_sc0000693.1_g000023 Rmu_sc0001044.1_g000005 Rmu_sc0006689.1_g000007 Rmu_sc0012733.1_g000005
rosa_roxburghii Rroxscaffold_3G00230540 Rroxscaffold_3G00230590 Rroxscaffold_3G00230600 Rroxscaffold_3G00230700 Rroxscaffold_3G00230710 Rroxscaffold_3G00232980 Rroxscaffold_3G00237610
rosa_rugosa Rorug07G0203800 Rorug07G0203900 Rorug07G0256100 Rorug07G0256400 Rorug07G0256400 Rorug07G0256400 Rorug07G0256500 Rorug07G0256600 Rorug07G0256600 Rorug07G0257100 Rorug07G0257200 Rorug07G0257300 Rorug07G0257400
rosa_samantha Rh7DG401100 Rh7DG401300 Rh7DG401900 Rh7DG402100 Rh7DG402300 Rh7DG402700
rosa_wichuraiana Rw0G001910 Rw0G001930 Rw0G001940 Rw7G033790 Rw7G033810 Rw7G033840 Rw7G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 440
AccI GTMKAC 1 cut(s) 396
AccII CGCG 9 cut(s) 116, 183, 201, 388, 468, 476, 494, 530, 532
AcoI YGGCCR 2 cut(s) 3, 555
AcsI RAATTY 1 cut(s) 98
AcuI CTGAAG 1 cut(s) 526
AcyI GRCGYC 2 cut(s) 374, 441
AfaI GTAC 5 cut(s) 302, 335, 422, 527, 572
AgeI ACCGGT 1 cut(s) 614
AgsI TTSAA 1 cut(s) 688
AluBI AGCT 3 cut(s) 39, 343, 637
AluI AGCT 3 cut(s) 39, 343, 637
Alw21I GWGCWC 1 cut(s) 474
Alw26I GTCTC 2 cut(s) 401, 581
AoxI GGCC 4 cut(s) 3, 244, 364, 555
ApeKI GCWGC 2 cut(s) 212, 453
ApoI RAATTY 1 cut(s) 98
AsiGI ACCGGT 1 cut(s) 614
AspLEI GCGC 8 cut(s) 185, 203, 390, 443, 478, 494, 532, 534
AspS9I GGNCC 2 cut(s) 612, 707
AsuC2I CCSGG 1 cut(s) 371
AsuHPI GGTGA 4 cut(s) 34, 298, 629, 637
AvaII GGWCC 2 cut(s) 612, 707
BalI TGGCCA 1 cut(s) 557
BanI GGYRCC 1 cut(s) 440
Bbv12I GWGCWC 1 cut(s) 474
BbvI GCAGC 2 cut(s) 224, 440
BccI CCATC 3 cut(s) 29, 137, 434
BceAI ACGGC 2 cut(s) 259, 633
BclI TGATCA 1 cut(s) 654
BcnI CCSGG 1 cut(s) 371
BcoDI GTCTC 2 cut(s) 401, 581
BfaI CTAG 2 cut(s) 36, 744
BfoI RGCGCY 1 cut(s) 444
BisI GCNGC 9 cut(s) 6, 210, 213, 364, 439, 454, 457, 495, 507
BlpI GCTNAGC 1 cut(s) 638
BlsI GCNGC 9 cut(s) 7, 211, 214, 365, 440, 455, 458, 496, 508
BmcAI AGTACT 1 cut(s) 422
Bme1390I CCNGG 1 cut(s) 371
Bme18I GGWCC 2 cut(s) 612, 707
BmgT120I GGNCC 2 cut(s) 612, 707
BmiI GGNNCC 2 cut(s) 349, 442
BmrFI CCNGG 1 cut(s) 371
BmrI ACTGGG 1 cut(s) 678
BmsI GCATC 2 cut(s) 543, 691
BmuI ACTGGG 1 cut(s) 678
Bpu1102I GCTNAGC 1 cut(s) 638
BpuMI CCSGG 1 cut(s) 371
BsaHI GRCGYC 2 cut(s) 374, 441
BsaI GGTCTC 1 cut(s) 401
BsaJI CCNNGG 1 cut(s) 241
BsaWI WCCGGW 2 cut(s) 614, 709
Bse118I RCCGGY 5 cut(s) 478, 560, 614, 704, 722
Bse1I ACTGG 1 cut(s) 673
BseDI CCNNGG 1 cut(s) 241
BseGI GGATG 4 cut(s) 129, 288, 706, 762
BseMII CTCAG 1 cut(s) 629
BseNI ACTGG 1 cut(s) 673
BsePI GCGCGC 1 cut(s) 530
BseRI GAGGAG 1 cut(s) 617
BseXI GCAGC 2 cut(s) 224, 440
BseYI CCCAGC 1 cut(s) 752
BsgI GTGCAG 1 cut(s) 628
Bsh1236I CGCG 9 cut(s) 116, 183, 201, 388, 468, 476, 494, 530, 532
Bsh1285I CGRYCG 2 cut(s) 120, 696
BshFI GGCC 4 cut(s) 5, 246, 366, 557
BshNI GGYRCC 1 cut(s) 440
BshTI ACCGGT 1 cut(s) 614
BsiEI CGRYCG 2 cut(s) 120, 696
BsiHKAI GWGCWC 1 cut(s) 474
BsiSI CCGG 7 cut(s) 371, 479, 561, 615, 705, 710, 723
BsiWI CGTACG 1 cut(s) 525
BslFI GGGAC 2 cut(s) 299, 448
BsmAI GTCTC 2 cut(s) 401, 581
BsmBI CGTCTC 1 cut(s) 581
BsmFI GGGAC 2 cut(s) 299, 448
BsnI GGCC 4 cut(s) 5, 246, 366, 557
Bso31I GGTCTC 1 cut(s) 401
Bsp1286I GDGCHC 1 cut(s) 474
Bsp143I GATC 3 cut(s) 285, 654, 693
Bsp1720I GCTNAGC 1 cut(s) 638
BspANI GGCC 4 cut(s) 5, 246, 366, 557
BspCNI CTCAG 1 cut(s) 630
BspFNI CGCG 9 cut(s) 116, 183, 201, 388, 468, 476, 494, 530, 532
BspLI GGNNCC 2 cut(s) 349, 442
BspT107I GGYRCC 1 cut(s) 440
BspTNI GGTCTC 1 cut(s) 401
BsrFI RCCGGY 5 cut(s) 478, 560, 614, 704, 722
BsrI ACTGG 1 cut(s) 673
BssAI RCCGGY 5 cut(s) 478, 560, 614, 704, 722
BssECI CCNNGG 1 cut(s) 241
BssHII GCGCGC 1 cut(s) 530
BssMI GATC 3 cut(s) 285, 654, 693
BssNI GRCGYC 2 cut(s) 374, 441
BstACI GRCGYC 2 cut(s) 374, 441
BstC8I GCNNGC 3 cut(s) 470, 474, 532
BstDEI CTNAG 1 cut(s) 638
BstDSI CCRYGG 1 cut(s) 241
BstF5I GGATG 4 cut(s) 129, 288, 706, 762
BstFNI CGCG 9 cut(s) 116, 183, 201, 388, 468, 476, 494, 530, 532
BstH2I RGCGCY 1 cut(s) 444
BstHHI GCGC 8 cut(s) 185, 203, 390, 443, 478, 494, 532, 534
BstKTI GATC 3 cut(s) 288, 657, 696
BstMAI GTCTC 2 cut(s) 401, 581
BstMBI GATC 3 cut(s) 285, 654, 693
BstMCI CGRYCG 2 cut(s) 120, 696
BstMWI GCNNNNNNNGC 7 cut(s) 209, 465, 482, 491, 503, 515, 749
BstSCI CCNGG 1 cut(s) 369
BstUI CGCG 9 cut(s) 116, 183, 201, 388, 468, 476, 494, 530, 532
BstV1I GCAGC 2 cut(s) 224, 440
BsuRI GGCC 4 cut(s) 5, 246, 366, 557
BtgI CCRYGG 1 cut(s) 241
BtsCI GGATG 4 cut(s) 129, 288, 706, 762
Cac8I GCNNGC 3 cut(s) 470, 474, 532
CfoI GCGC 8 cut(s) 185, 203, 390, 443, 478, 494, 532, 534
Cfr10I RCCGGY 5 cut(s) 478, 560, 614, 704, 722
Cfr13I GGNCC 2 cut(s) 612, 707
CpoI CGGWCCG 1 cut(s) 707
CseI GACGC 1 cut(s) 363
Csp6I GTAC 5 cut(s) 301, 334, 421, 526, 571
CspAI ACCGGT 1 cut(s) 614
CspI CGGWCCG 1 cut(s) 707
CviQI GTAC 5 cut(s) 301, 334, 421, 526, 571
DdeI CTNAG 1 cut(s) 638
DinI GGCGCC 1 cut(s) 442
DpnI GATC 3 cut(s) 287, 656, 695
DpnII GATC 3 cut(s) 285, 654, 693
EaeI YGGCCR 2 cut(s) 3, 555
EciI GGCGGA 2 cut(s) 196, 533
Eco31I GGTCTC 1 cut(s) 401
Eco47I GGWCC 2 cut(s) 612, 707
Eco57I CTGAAG 1 cut(s) 526
EgeI GGCGCC 1 cut(s) 442
EheI GGCGCC 1 cut(s) 442
Esp3I CGTCTC 1 cut(s) 581
FaiI YATR 2 cut(s) 681, 741
FaqI GGGAC 2 cut(s) 299, 448
FauI CCCGC 5 cut(s) 142, 301, 473, 490, 582
FbaI TGATCA 1 cut(s) 654
FblI GTMKAC 1 cut(s) 396
Fnu4HI GCNGC 9 cut(s) 6, 210, 213, 364, 439, 454, 457, 495, 507
FokI GGATG 4 cut(s) 116, 275, 713, 769
Fsp4HI GCNGC 9 cut(s) 6, 210, 213, 364, 439, 454, 457, 495, 507
FspBI CTAG 2 cut(s) 36, 744
GlaI GCGC 8 cut(s) 184, 202, 389, 442, 477, 493, 531, 533
GluI GCNGC 9 cut(s) 6, 210, 213, 364, 439, 454, 457, 495, 507
GsaI CCCAGC 1 cut(s) 756
HaeII RGCGCY 1 cut(s) 444
HaeIII GGCC 4 cut(s) 5, 246, 366, 557
HapII CCGG 7 cut(s) 371, 479, 561, 615, 705, 710, 723
HgaI GACGC 1 cut(s) 363
HhaI GCGC 8 cut(s) 185, 203, 390, 443, 478, 494, 532, 534
Hin1I GRCGYC 2 cut(s) 374, 441
Hin6I GCGC 8 cut(s) 183, 201, 388, 441, 476, 492, 530, 532
HinP1I GCGC 8 cut(s) 183, 201, 388, 441, 476, 492, 530, 532
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HinfI GANTC 3 cut(s) 521, 581, 760
HpaII CCGG 7 cut(s) 371, 479, 561, 615, 705, 710, 723
HphI GGTGA 4 cut(s) 34, 298, 629, 637
Hpy166II GTNNAC 2 cut(s) 397, 571
Hpy188I TCNGA 4 cut(s) 331, 586, 654, 719
Hpy188III TCNNGA 1 cut(s) 544
Hpy8I GTNNAC 2 cut(s) 397, 571
Hpy99I CGWCG 3 cut(s) 260, 263, 398
HpyAV CCTTC 2 cut(s) 199, 247
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 1 cut(s) 609
HpyF10VI GCNNNNNNNGC 7 cut(s) 209, 465, 482, 491, 503, 515, 749
HpyF3I CTNAG 1 cut(s) 638
HpySE526I ACGT 1 cut(s) 255
Hsp92I GRCGYC 2 cut(s) 374, 441
HspAI GCGC 8 cut(s) 183, 201, 388, 441, 476, 492, 530, 532
KasI GGCGCC 1 cut(s) 440
Ksp22I TGATCA 1 cut(s) 654
Kzo9I GATC 3 cut(s) 285, 654, 693
LmnI GCTCC 1 cut(s) 353
Lsp1109I GCAGC 2 cut(s) 224, 440
LweI GCATC 2 cut(s) 543, 691
MaeI CTAG 2 cut(s) 36, 744
MaeII ACGT 1 cut(s) 255
MalI GATC 3 cut(s) 287, 656, 695
MboI GATC 3 cut(s) 285, 654, 693
MboII GAAGA 2 cut(s) 529, 532
MhlI GDGCHC 1 cut(s) 474
MlsI TGGCCA 1 cut(s) 557
MluCI AATT 1 cut(s) 98
MluNI TGGCCA 1 cut(s) 557
Mly113I GGCGCC 1 cut(s) 441
MlyI GAGTC 1 cut(s) 530
MmeI TCCRAC 1 cut(s) 345
Mox20I TGGCCA 1 cut(s) 557
MscI TGGCCA 1 cut(s) 557
Msp20I TGGCCA 1 cut(s) 557
MspA1I CMGCKG 1 cut(s) 577
MspI CCGG 7 cut(s) 371, 479, 561, 615, 705, 710, 723
MspR9I CCNGG 1 cut(s) 371
MvnI CGCG 9 cut(s) 116, 183, 201, 388, 468, 476, 494, 530, 532
MwoI GCNNNNNNNGC 7 cut(s) 209, 465, 482, 491, 503, 515, 749
NarI GGCGCC 1 cut(s) 441
NciI CCSGG 1 cut(s) 371
NdeII GATC 3 cut(s) 285, 654, 693
NlaIV GGNNCC 2 cut(s) 349, 442
NmeAIII GCCGAG 3 cut(s) 322, 324, 468
PauI GCGCGC 1 cut(s) 530
PcsI WCGNNNNNNNCGW 2 cut(s) 261, 402
PfeI GAWTC 2 cut(s) 581, 760
Pfl23II CGTACG 1 cut(s) 525
PflFI GACNNNGTC 1 cut(s) 412
PinAI ACCGGT 1 cut(s) 614
PkrI GCNGC 9 cut(s) 7, 211, 214, 365, 440, 455, 458, 496, 508
Ple19I CGATCG 1 cut(s) 696
PleI GAGTC 1 cut(s) 529
PluTI GGCGCC 1 cut(s) 444
PpsI GAGTC 1 cut(s) 529
PspFI CCCAGC 1 cut(s) 752
PspLI CGTACG 1 cut(s) 525
PspN4I GGNNCC 2 cut(s) 349, 442
PspPI GGNCC 2 cut(s) 612, 707
PsyI GACNNNGTC 1 cut(s) 412
PteI GCGCGC 1 cut(s) 530
PvuI CGATCG 1 cut(s) 696
RsaI GTAC 5 cut(s) 302, 335, 422, 527, 572
RsaNI GTAC 5 cut(s) 301, 334, 421, 526, 571
Rsr2I CGGWCCG 1 cut(s) 707
RsrII CGGWCCG 1 cut(s) 707
SalI GTCGAC 1 cut(s) 395
SatI GCNGC 9 cut(s) 6, 210, 213, 364, 439, 454, 457, 495, 507
Sau3AI GATC 3 cut(s) 285, 654, 693
Sau96I GGNCC 2 cut(s) 612, 707
ScaI AGTACT 1 cut(s) 422
SchI GAGTC 1 cut(s) 530
ScrFI CCNGG 1 cut(s) 371
SduI GDGCHC 1 cut(s) 474
SfaNI GCATC 2 cut(s) 543, 691
SfoI GGCGCC 1 cut(s) 442
SgrAI CRCCGGYG 2 cut(s) 478, 560
SinI GGWCC 2 cut(s) 612, 707
Sse9I AATT 1 cut(s) 98
SspDI GGCGCC 1 cut(s) 440
SspMI CTAG 2 cut(s) 36, 744
StyD4I CCNGG 1 cut(s) 369
TaiI ACGT 1 cut(s) 258
TaqI TCGA 2 cut(s) 273, 396
TasI AATT 1 cut(s) 98
TatI WGTACW 1 cut(s) 420
TauI GCSGC 7 cut(s) 8, 212, 366, 441, 459, 497, 509
TfiI GAWTC 2 cut(s) 581, 760
TseI GCWGC 2 cut(s) 212, 453
Tth111I GACNNNGTC 1 cut(s) 412
VpaK11BI GGWCC 2 cut(s) 612, 707
XapI RAATTY 1 cut(s) 98
XmiI GTMKAC 1 cut(s) 396
XspI CTAG 2 cut(s) 36, 744
ZrmI AGTACT 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.