Rw0G001940
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00060
OG0000615
Physical Location & Seq
Reverse (-)
169834 .. 172486
2653 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G001940.1

Sequence Viewer

Length: 1014 bp
ATGGGTGGACGTTTGATTGATGTTGACCGGGAACTTCCCATTTCTAATGATGCTCGCACTGTGGTCTTAGTTGGACGCACTGGTAATGGAAAAAGTGCAACAGGCAACAGCATTCTTGGCAAAAACGCCTTCAAGGCCAAGCGTAGCTCTAGTAGGGTCACGACCACTACTGAATTGAAGACTGCTATCTTGAGAAATGGACAACAAATTAATGTTATAGACACTCCTGGTCTTTTTGATAATTCTGCCAAATCAGAATTTATTGGCAAAGAAATTGCCAAATGCATTAAATTGGCCGAGGATGGAATCCATGCTGTTCTTGTGGTTCTCTCAACTAGAACTCGCTTCACGAAAGAAGAGGAGTCTGCACTCCGTAGCTTGGAAATTCTATTTGGAAGTAAAATCTTTGACTATATGATTGTTATCTTCACCGGAGGAGATGAGTTGGAAGAAAATGATGAGACTTTGGAAGATTATTTGGGACATGATTGCCCGGAGCCTTTGAAGGAACTCCTTGGTCTGTGTGGAAATCGTTGTGTGCTTTTTGATAACAAGACTAAGGATAAAAGCAAGAGGGTCGAACAAGTGCAGCAGCTTCTGTCGCTTGTAAACTCGGTTATAGCACAGAATGGTGGGCGGCCATACACAGATGAGATATTTGCTGAAGCGAAGAAAGGGGCTATGAAATTTCGTGATCAACAAGAAGAGGTTGCTTCGAAGGGGTATTCAAAACGAGACATAAATCTTTTGAATGAGCAGATGCAGCGTCAATATGATCTGCAGCTTAAACAAATTACTGAGATGCTTGAGTTAAAGATGAGAGTGAATACCATGGCGCTTGAACAAAAGTTAGCAGATGAACATGCTGCACGACTAAGATCTGAACTGCAGATTGCCCGAGAGGCTCAACAAAGATCTGAAAAAGAGAGATACGATCTGCAAGTAGAGAAGCGGATACGTGACGGAAATGGCAGAGGCCGCATAGACCTCGGAGACATTTGTCCTATTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

337

Amino Acids

37.92

Weight (kDa)

6.42

Isoelectric Point (pI)

41.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIG1 PF04548 19 - 233 2.3e-81 AIG1 family
MMR_HSR1 PF01926 20 - 126 1.5e-11 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000615)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33970 AT1G33970 AT1G33970 AT1G33970 AT1G33970
fragaria_vesca FvH4_5g32530 FvH4_5g32530
malus_domestica MD15G1403700.v1.1
prunus_persica Prupe.1G549700_v2.0.a1 Prupe.1G549700_v2.0.a1
pyrus_communis pycom15g36100
rosa_chinensis RchiOBHm_Chr7g0226331 RchiOBHm_Chr7g0229101 RchiOBHm_Chr7g0229111 RchiOBHm_Chr7g0229141 RchiOBHm_Chr7g0229161 RchiOBHm_Chr7g0229171 RchiOBHm_Chr7g0229211 RchiOBHm_Chr7g0229241 RchiOBHm_Chr7g0229381 RchiOBHm_Chr7g0229761 RchiOBHm_Chr7g0229911
rosa_laevigata RLG00000000796 RLG00000001464 RLG00000001466 RLG00000001469 RLG00000001523 RLG00000001526 RLG00000001529 RLG00000001530 RLG00000001749 RLG00000001913 RLG00000002114 RLG00000002115 RLG00000023248 RLG00000023250
rosa_multiflora Rmu_co8281135.1_g000001 Rmu_sc0000271.1_g000002 Rmu_sc0000271.1_g000007 Rmu_sc0000271.1_g000014 Rmu_sc0000693.1_g000012 Rmu_sc0000693.1_g000015 Rmu_sc0000693.1_g000023 Rmu_sc0001044.1_g000005 Rmu_sc0006689.1_g000007 Rmu_sc0012733.1_g000005
rosa_roxburghii Rroxscaffold_3G00230540 Rroxscaffold_3G00230590 Rroxscaffold_3G00230600 Rroxscaffold_3G00230700 Rroxscaffold_3G00230710 Rroxscaffold_3G00232980 Rroxscaffold_3G00237610
rosa_rugosa Rorug07G0203800 Rorug07G0203900 Rorug07G0256100 Rorug07G0256400 Rorug07G0256400 Rorug07G0256400 Rorug07G0256500 Rorug07G0256600 Rorug07G0256600 Rorug07G0257100 Rorug07G0257200 Rorug07G0257300 Rorug07G0257400
rosa_samantha Rh7DG401100 Rh7DG401300 Rh7DG401900 Rh7DG402100 Rh7DG402300 Rh7DG402700
rosa_wichuraiana Rw0G001910 Rw0G001930 Rw0G001940 Rw7G033790 Rw7G033810 Rw7G033840 Rw7G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 637, 952, 979
AcoI YGGCCR 2 cut(s) 294, 638
AcsI RAATTY 3 cut(s) 257, 384, 686
AcuI CTGAAG 1 cut(s) 684
AfiI CCNNNNNNNGG 1 cut(s) 379
AgsI TTSAA 6 cut(s) 133, 178, 505, 729, 751, 842
AjnI CCWGG 1 cut(s) 226
AjuI GAANNNNNNNTTGG 2 cut(s) 375, 407
AluBI AGCT 4 cut(s) 147, 378, 595, 784
AluI AGCT 4 cut(s) 147, 378, 595, 784
Alw26I GTCTC 3 cut(s) 455, 729, 987
AlwNI CAGNNNCTG 1 cut(s) 598
Ama87I CYCGRG 1 cut(s) 897
AoxI GGCC 4 cut(s) 135, 294, 638, 976
ApeKI GCWGC 5 cut(s) 589, 592, 763, 781, 866
ApoI RAATTY 3 cut(s) 257, 384, 686
AseI ATTAAT 1 cut(s) 210
AspLEI GCGC 1 cut(s) 838
AsuC2I CCSGG 2 cut(s) 29, 494
AsuHPI GGTGA 1 cut(s) 421
AsuII TTCGAA 1 cut(s) 716
AvaI CYCGRG 1 cut(s) 897
BbsI GAAGAC 1 cut(s) 185
BbvI GCAGC 5 cut(s) 601, 604, 775, 793, 853
BccI CCATC 1 cut(s) 296
BcgI CGANNNNNNTGC 4 cut(s) 559, 593, 970, 1004
BciT130I CCWGG 1 cut(s) 228
BciVI GTATCC 1 cut(s) 948
BclI TGATCA 1 cut(s) 694
BcnI CCSGG 2 cut(s) 29, 494
BcoDI GTCTC 3 cut(s) 455, 729, 987
BfaI CTAG 2 cut(s) 150, 336
BfmI CTRYAG 2 cut(s) 779, 887
BfoI RGCGCY 1 cut(s) 839
BfuI GTATCC 1 cut(s) 948
BglI GCCNNNNNGGC 2 cut(s) 134, 902
BglII AGATCT 2 cut(s) 878, 914
BisI GCNGC 7 cut(s) 590, 593, 638, 764, 782, 867, 979
BlsI GCNGC 7 cut(s) 591, 594, 639, 765, 783, 868, 980
Bme1390I CCNGG 3 cut(s) 29, 228, 494
BmeT110I CYCGRG 1 cut(s) 897
BmiI GGNNCC 1 cut(s) 498
BmrFI CCNGG 3 cut(s) 29, 228, 494
BmsI GCATC 3 cut(s) 40, 750, 792
BoxI GACNNNNGTC 1 cut(s) 999
BpiI GAAGAC 1 cut(s) 185
Bpu14I TTCGAA 1 cut(s) 716
BpuEI CTTGAG 2 cut(s) 211, 827
BpuMI CCSGG 2 cut(s) 29, 494
BsaAI YACGTR 1 cut(s) 959
BsaBI GATNNNNATC 1 cut(s) 422
BsaJI CCNNGG 4 cut(s) 297, 514, 831, 988
BsaWI WCCGGW 1 cut(s) 431
Bsc4I CCNNNNNNNGG 1 cut(s) 379
Bse1I ACTGG 1 cut(s) 85
Bse8I GATNNNNATC 1 cut(s) 422
BseBI CCWGG 1 cut(s) 228
BseDI CCNNGG 4 cut(s) 297, 514, 831, 988
BseGI GGATG 1 cut(s) 307
BseJI GATNNNNATC 1 cut(s) 422
BseLI CCNNNNNNNGG 1 cut(s) 379
BseMII CTCAG 1 cut(s) 789
BseNI ACTGG 1 cut(s) 85
BseRI GAGGAG 2 cut(s) 374, 450
BseXI GCAGC 5 cut(s) 601, 604, 775, 793, 853
BsgI GTGCAG 3 cut(s) 351, 608, 852
BshFI GGCC 4 cut(s) 137, 296, 640, 978
BsiHKCI CYCGRG 1 cut(s) 897
BsiSI CCGG 3 cut(s) 28, 432, 494
BslFI GGGAC 1 cut(s) 495
BslI CCNNNNNNNGG 1 cut(s) 379
BsmAI GTCTC 3 cut(s) 455, 729, 987
BsmFI GGGAC 1 cut(s) 495
BsmI GAATGC 1 cut(s) 111
BsnI GGCC 4 cut(s) 137, 296, 640, 978
BsoBI CYCGRG 1 cut(s) 897
Bsp119I TTCGAA 1 cut(s) 716
Bsp143I GATC 5 cut(s) 694, 775, 878, 914, 934
Bsp19I CCATGG 1 cut(s) 831
BspACI CCGC 3 cut(s) 637, 952, 979
BspANI GGCC 4 cut(s) 137, 296, 640, 978
BspCNI CTCAG 1 cut(s) 790
BspLI GGNNCC 1 cut(s) 498
BspMAI CTGCAG 2 cut(s) 783, 891
BspT104I TTCGAA 1 cut(s) 716
BsrI ACTGG 1 cut(s) 85
BssECI CCNNGG 4 cut(s) 297, 514, 831, 988
BssMI GATC 5 cut(s) 694, 775, 878, 914, 934
BssT1I CCWWGG 2 cut(s) 514, 831
Bst2UI CCWGG 1 cut(s) 228
Bst4CI ACNGT 1 cut(s) 61
Bst6I CTCTTC 2 cut(s) 351, 699
BstBAI YACGTR 1 cut(s) 959
BstBI TTCGAA 1 cut(s) 716
BstC8I GCNNGC 1 cut(s) 55
BstDEI CTNAG 4 cut(s) 67, 558, 798, 875
BstDSI CCRYGG 1 cut(s) 831
BstF5I GGATG 1 cut(s) 307
BstH2I RGCGCY 1 cut(s) 839
BstHHI GCGC 1 cut(s) 838
BstKTI GATC 5 cut(s) 697, 778, 881, 917, 937
BstMAI GTCTC 3 cut(s) 455, 729, 987
BstMBI GATC 5 cut(s) 694, 775, 878, 914, 934
BstMWI GCNNNNNNNGC 6 cut(s) 117, 134, 601, 763, 902, 978
BstNI CCWGG 1 cut(s) 228
BstNSI RCATGY 1 cut(s) 866
BstPAI GACNNNNGTC 1 cut(s) 999
BstSCI CCNGG 3 cut(s) 27, 226, 492
BstSFI CTRYAG 2 cut(s) 779, 887
BstV1I GCAGC 5 cut(s) 601, 604, 775, 793, 853
BstV2I GAAGAC 1 cut(s) 185
BstX2I RGATCY 2 cut(s) 878, 914
BstYI RGATCY 2 cut(s) 878, 914
BsuI GTATCC 1 cut(s) 948
BsuRI GGCC 4 cut(s) 137, 296, 640, 978
BtgI CCRYGG 1 cut(s) 831
BtsCI GGATG 1 cut(s) 307
BtsIMutI CAGTG 2 cut(s) 57, 78
Cac8I GCNNGC 1 cut(s) 55
CaiI CAGNNNCTG 1 cut(s) 598
CfoI GCGC 1 cut(s) 838
CseI GACGC 2 cut(s) 84, 755
CviAII CATG 4 cut(s) 311, 485, 832, 863
DdeI CTNAG 4 cut(s) 67, 558, 798, 875
DpnI GATC 5 cut(s) 696, 777, 880, 916, 936
DpnII GATC 5 cut(s) 694, 775, 878, 914, 934
EaeI YGGCCR 2 cut(s) 294, 638
Eam1104I CTCTTC 2 cut(s) 351, 699
EarI CTCTTC 2 cut(s) 351, 699
Eco130I CCWWGG 2 cut(s) 514, 831
Eco57I CTGAAG 1 cut(s) 684
Eco88I CYCGRG 1 cut(s) 897
EcoRII CCWGG 1 cut(s) 226
EcoT14I CCWWGG 2 cut(s) 514, 831
EcoT22I ATGCAT 1 cut(s) 287
ErhI CCWWGG 2 cut(s) 514, 831
FaeI CATG 4 cut(s) 314, 488, 835, 866
FaqI GGGAC 1 cut(s) 495
FatI CATG 4 cut(s) 310, 484, 831, 862
FbaI TGATCA 1 cut(s) 694
Fnu4HI GCNGC 7 cut(s) 590, 593, 638, 764, 782, 867, 979
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 7 cut(s) 590, 593, 638, 764, 782, 867, 979
FspBI CTAG 2 cut(s) 150, 336
GlaI GCGC 1 cut(s) 837
GluI GCNGC 7 cut(s) 590, 593, 638, 764, 782, 867, 979
HaeII RGCGCY 1 cut(s) 839
HaeIII GGCC 4 cut(s) 137, 296, 640, 978
HapII CCGG 3 cut(s) 28, 432, 494
HgaI GACGC 2 cut(s) 84, 755
HhaI GCGC 1 cut(s) 838
Hin1II CATG 4 cut(s) 314, 488, 835, 866
Hin6I GCGC 1 cut(s) 836
HinP1I GCGC 1 cut(s) 836
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 2 cut(s) 306, 362
HpaII CCGG 3 cut(s) 28, 432, 494
HphI GGTGA 1 cut(s) 421
Hpy166II GTNNAC 3 cut(s) 8, 25, 610
Hpy188I TCNGA 4 cut(s) 256, 883, 919, 992
Hpy188III TCNNGA 4 cut(s) 160, 190, 349, 692
Hpy8I GTNNAC 3 cut(s) 8, 25, 610
HpyAV CCTTC 3 cut(s) 139, 499, 712
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4IV ACGT 2 cut(s) 10, 958
HpyCH4V TGCA 9 cut(s) 98, 285, 368, 589, 763, 781, 869, 889, 940
HpyF10VI GCNNNNNNNGC 6 cut(s) 117, 134, 601, 763, 902, 978
HpyF3I CTNAG 4 cut(s) 67, 558, 798, 875
HpySE526I ACGT 2 cut(s) 10, 958
Hsp92II CATG 4 cut(s) 314, 488, 835, 866
HspAI GCGC 1 cut(s) 836
Ksp22I TGATCA 1 cut(s) 694
Kzo9I GATC 5 cut(s) 694, 775, 878, 914, 934
LmnI GCTCC 1 cut(s) 496
LpnPI CCDG 7 cut(s) 41, 66, 87, 213, 240, 445, 507
Lsp1109I GCAGC 5 cut(s) 601, 604, 775, 793, 853
LweI GCATC 3 cut(s) 40, 750, 792
MaeI CTAG 2 cut(s) 150, 336
MaeII ACGT 2 cut(s) 10, 958
MaeIII GTNAC 2 cut(s) 157, 959
MalI GATC 5 cut(s) 696, 777, 880, 916, 936
MboI GATC 5 cut(s) 694, 775, 878, 914, 934
MboII GAAGA 7 cut(s) 190, 368, 418, 461, 482, 682, 716
MflI RGATCY 2 cut(s) 878, 914
MluCI AATT 9 cut(s) 173, 207, 241, 257, 273, 290, 384, 686, 792
MlyI GAGTC 1 cut(s) 371
MmeI TCCRAC 2 cut(s) 52, 426
MnlI CCTC 8 cut(s) 292, 352, 428, 567, 700, 895, 968, 998
Mph1103I ATGCAT 1 cut(s) 287
MseI TTAA 5 cut(s) 210, 288, 786, 812, 1012
MspI CCGG 3 cut(s) 28, 432, 494
MspR9I CCNGG 3 cut(s) 29, 228, 494
Mva1269I GAATGC 1 cut(s) 111
MvaI CCWGG 1 cut(s) 228
MwoI GCNNNNNNNGC 6 cut(s) 117, 134, 601, 763, 902, 978
NciI CCSGG 2 cut(s) 29, 494
NcoI CCATGG 1 cut(s) 831
NdeII GATC 5 cut(s) 694, 775, 878, 914, 934
NlaIII CATG 4 cut(s) 314, 488, 835, 866
NlaIV GGNNCC 1 cut(s) 498
NmeAIII GCCGAG 1 cut(s) 322
NmuCI GTSAC 2 cut(s) 157, 959
NsiI ATGCAT 1 cut(s) 287
NspI RCATGY 1 cut(s) 866
NspV TTCGAA 1 cut(s) 716
PctI GAATGC 1 cut(s) 111
PfeI GAWTC 1 cut(s) 306
PkrI GCNGC 7 cut(s) 591, 594, 639, 765, 783, 868, 980
PleI GAGTC 1 cut(s) 370
PpsI GAGTC 1 cut(s) 370
Ppu21I YACGTR 1 cut(s) 959
PshAI GACNNNNGTC 1 cut(s) 999
PshBI ATTAAT 1 cut(s) 210
Psp6I CCWGG 1 cut(s) 226
PspGI CCWGG 1 cut(s) 226
PspN4I GGNNCC 1 cut(s) 498
PstI CTGCAG 2 cut(s) 783, 891
PstNI CAGNNNCTG 1 cut(s) 598
PsuI RGATCY 2 cut(s) 878, 914
SaqAI TTAA 5 cut(s) 210, 288, 786, 812, 1012
SatI GCNGC 7 cut(s) 590, 593, 638, 764, 782, 867, 979
Sau3AI GATC 5 cut(s) 694, 775, 878, 914, 934
SchI GAGTC 1 cut(s) 371
ScrFI CCNGG 3 cut(s) 29, 228, 494
SetI ASST 8 cut(s) 13, 149, 380, 597, 711, 786, 961, 990
SfaNI GCATC 3 cut(s) 40, 750, 792
SfcI CTRYAG 2 cut(s) 779, 887
SfuI TTCGAA 1 cut(s) 716
SmlI CTYRAG 2 cut(s) 190, 806
SmoI CTYRAG 2 cut(s) 190, 806
Sse9I AATT 9 cut(s) 173, 207, 241, 257, 273, 290, 384, 686, 792
SsiI CCGC 3 cut(s) 637, 952, 979
SspMI CTAG 2 cut(s) 150, 336
StyD4I CCNGG 3 cut(s) 27, 226, 492
StyI CCWWGG 2 cut(s) 514, 831
TaaI ACNGT 1 cut(s) 61
TaiI ACGT 2 cut(s) 13, 961
TaqI TCGA 2 cut(s) 579, 716
TasI AATT 9 cut(s) 173, 207, 241, 257, 273, 290, 384, 686, 792
TauI GCSGC 2 cut(s) 640, 981
TfiI GAWTC 1 cut(s) 306
Tru1I TTAA 5 cut(s) 210, 288, 786, 812, 1012
Tru9I TTAA 5 cut(s) 210, 288, 786, 812, 1012
TscAI CASTG 2 cut(s) 64, 85
TseFI GTSAC 2 cut(s) 157, 959
TseI GCWGC 5 cut(s) 589, 592, 763, 781, 866
Tsp45I GTSAC 2 cut(s) 157, 959
TspDTI ATGAA 2 cut(s) 698, 873
TspGWI ACGGA 2 cut(s) 362, 978
TspRI CASTG 2 cut(s) 64, 85
VspI ATTAAT 1 cut(s) 210
XapI RAATTY 3 cut(s) 257, 384, 686
XceI RCATGY 1 cut(s) 866
XspI CTAG 2 cut(s) 150, 336
Zsp2I ATGCAT 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.