RLG00000001464
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000615
Physical Location & Seq
Forward (+)
15885265 .. 15888005
2741 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001464

Sequence Viewer

Length: 1092 bp
ATGATTAATGCTGACCAGGAACTTCCCTTTTATAATGCTGCTCGCACTGTGGTCTTAGTTGGACGCACTGGTAATGGAAAAAGTGCAACAGGCAACAGCATTCTTGGCGAAAGAGCCTTCACTTCCAAGCGTAGCTCTAGTGGTGTCACGACCACTACTGAATTGAAGACTGCTATCTTGAGAGATGGACAACAAATTAATGTTATAGACACTCCTGGTCTTTTTGATAATTCTGCCAAATCAGACTTTATTGTCAATGAAATTGCCCAATGCATTAAATTGGCTGAGGATGGGATCCATGCTGTTCTTGTGGTTCTCTCAACTAGAACTCGCTTTTCACAAGAAGAGAATTCTGCAATCCATAGCTTGGAAACTCTCTTTGGAAGTAAAATCGTTGACTATATGATTGTTGTCTTTACGGGAGGAGATGAGCTTGAAGAAAATGATGAGACTTTGGAAGATTATTTGGGCCGTGATTGTCCAGAGCCTTTGAAGGAAATCCTTGGTCTCTGTGGAAATCGCTGTGTGCTTTTTGATAACAAGACTAAGGATGAAAGCAAGAGGATCGAACAAGTGCAACGGCTTCTCTCACTTGTAAACTCGGTTATAGCACAGAATGGTGGGCGGCCATACACAGATGAGAAATTTACTGAAGTGAAGAAAGGGGCTATGAAACTTCGTGATCAACAAGAAGATATTGCTTCTTTGAAGGGTTATTCAGAACGAGAAATATCTCGTTTGAATGAGCAGATACAGCTTGCACATGATCAACAGCTTAAACAAATTACTGAGATGGGTGAGTTAAAGATGAGAGAGAATACCACGATGCTTGAACAAAAGTTAGCAGATGAACACGCTGCACGACTAAGAGCAGAAGAGACTGCCCAAGTGGCTCAACAAAGGTCTGAGAATGAAATTCAAAATCTTAGTTATGAACTACAAGCAGAGAAGCGGAAAAGTGGCAGAAGAAAGCTATGTGGTAAGGATATCGTGGAGTTTGCGGCAACTGGTTGCGACTTCTGGTTGATAATGGCCATGATGTCCTGTGTAAATGTGAAAGATGCTGGCTCACAGTTGGAAGTTAATATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

364

Amino Acids

40.55

Weight (kDa)

5.09

Isoelectric Point (pI)

40.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIG1 PF04548 15 - 229 9.7e-81 AIG1 family
MMR_HSR1 PF01926 16 - 122 7.5e-11 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000615)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33970 AT1G33970 AT1G33970 AT1G33970 AT1G33970
fragaria_vesca FvH4_5g32530 FvH4_5g32530
malus_domestica MD15G1403700.v1.1
prunus_persica Prupe.1G549700_v2.0.a1 Prupe.1G549700_v2.0.a1
pyrus_communis pycom15g36100
rosa_chinensis RchiOBHm_Chr7g0226331 RchiOBHm_Chr7g0229101 RchiOBHm_Chr7g0229111 RchiOBHm_Chr7g0229141 RchiOBHm_Chr7g0229161 RchiOBHm_Chr7g0229171 RchiOBHm_Chr7g0229211 RchiOBHm_Chr7g0229241 RchiOBHm_Chr7g0229381 RchiOBHm_Chr7g0229761 RchiOBHm_Chr7g0229911
rosa_laevigata RLG00000000796 RLG00000001464 RLG00000001466 RLG00000001469 RLG00000001523 RLG00000001526 RLG00000001529 RLG00000001530 RLG00000001749 RLG00000001913 RLG00000002114 RLG00000002115 RLG00000023248 RLG00000023250
rosa_multiflora Rmu_co8281135.1_g000001 Rmu_sc0000271.1_g000002 Rmu_sc0000271.1_g000007 Rmu_sc0000271.1_g000014 Rmu_sc0000693.1_g000012 Rmu_sc0000693.1_g000015 Rmu_sc0000693.1_g000023 Rmu_sc0001044.1_g000005 Rmu_sc0006689.1_g000007 Rmu_sc0012733.1_g000005
rosa_roxburghii Rroxscaffold_3G00230540 Rroxscaffold_3G00230590 Rroxscaffold_3G00230600 Rroxscaffold_3G00230700 Rroxscaffold_3G00230710 Rroxscaffold_3G00232980 Rroxscaffold_3G00237610
rosa_rugosa Rorug07G0203800 Rorug07G0203900 Rorug07G0256100 Rorug07G0256400 Rorug07G0256400 Rorug07G0256400 Rorug07G0256500 Rorug07G0256600 Rorug07G0256600 Rorug07G0257100 Rorug07G0257200 Rorug07G0257300 Rorug07G0257400
rosa_samantha Rh7DG401100 Rh7DG401300 Rh7DG401900 Rh7DG402100 Rh7DG402300 Rh7DG402700
rosa_wichuraiana Rw0G001910 Rw0G001930 Rw0G001940 Rw7G033790 Rw7G033810 Rw7G033840 Rw7G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 33
AasI GACNNNNNNGTC 1 cut(s) 251
AccB7I CCANNNNNTGG 1 cut(s) 367
AciI CCGC 3 cut(s) 625, 952, 1001
AclWI GGATC 3 cut(s) 289, 302, 572
AcoI YGGCCR 2 cut(s) 626, 1032
AcsI RAATTY 3 cut(s) 349, 644, 915
AcuI CTGAAG 1 cut(s) 672
AfiI CCNNNNNNNGG 1 cut(s) 367
AgsI TTSAA 7 cut(s) 166, 437, 493, 709, 742, 833, 920
AjnI CCWGG 2 cut(s) 15, 214
AjuI GAANNNNNNNTTGG 2 cut(s) 363, 395
AluBI AGCT 6 cut(s) 135, 366, 433, 757, 775, 973
AluI AGCT 6 cut(s) 135, 366, 433, 757, 775, 973
Alw26I GTCTC 3 cut(s) 443, 512, 872
AlwI GGATC 3 cut(s) 289, 302, 572
AoxI GGCC 3 cut(s) 469, 626, 1032
ApeKI GCWGC 2 cut(s) 38, 857
ApoI RAATTY 3 cut(s) 349, 644, 915
AseI ATTAAT 2 cut(s) 6, 198
AspS9I GGNCC 1 cut(s) 469
AsuHPI GGTGA 1 cut(s) 809
BalI TGGCCA 1 cut(s) 1034
BamHI GGATCC 1 cut(s) 294
BbsI GAAGAC 1 cut(s) 173
BbvCI CCTCAGC 1 cut(s) 285
BbvI GCAGC 2 cut(s) 25, 844
BccI CCATC 3 cut(s) 179, 284, 787
BceAI ACGGC 2 cut(s) 456, 596
BcgI CGANNNNNNTGC 2 cut(s) 547, 581
BciT130I CCWGG 2 cut(s) 17, 216
BclI TGATCA 2 cut(s) 682, 766
BcoDI GTCTC 3 cut(s) 443, 512, 872
BfaI CTAG 2 cut(s) 138, 324
BglI GCCNNNNNGGC 1 cut(s) 890
BisI GCNGC 4 cut(s) 39, 626, 858, 1002
BlsI GCNGC 4 cut(s) 40, 627, 859, 1003
Bme1390I CCNGG 2 cut(s) 17, 216
BmgT120I GGNCC 1 cut(s) 469
BmiI GGNNCC 1 cut(s) 296
BmrFI CCNGG 2 cut(s) 17, 216
BmsI GCATC 2 cut(s) 816, 1051
BpiI GAAGAC 1 cut(s) 173
Bpu10I CCTNAGC 1 cut(s) 285
BpuEI CTTGAG 1 cut(s) 199
BsaI GGTCTC 1 cut(s) 512
BsaJI CCNNGG 1 cut(s) 502
Bsc4I CCNNNNNNNGG 1 cut(s) 367
Bse1I ACTGG 2 cut(s) 73, 1012
BseBI CCWGG 2 cut(s) 17, 216
BseDI CCNNGG 1 cut(s) 502
BseGI GGATG 2 cut(s) 295, 556
BseLI CCNNNNNNNGG 1 cut(s) 367
BseMII CTCAG 3 cut(s) 276, 780, 897
BseNI ACTGG 2 cut(s) 73, 1012
BseRI GAGGAG 1 cut(s) 438
BseXI GCAGC 2 cut(s) 25, 844
BsgI GTGCAG 1 cut(s) 843
BshFI GGCC 3 cut(s) 471, 628, 1034
BslI CCNNNNNNNGG 1 cut(s) 367
BsmAI GTCTC 3 cut(s) 443, 512, 872
BsmI GAATGC 1 cut(s) 99
BsnI GGCC 3 cut(s) 471, 628, 1034
Bso31I GGTCTC 1 cut(s) 512
Bsp143I GATC 4 cut(s) 294, 564, 682, 766
BspACI CCGC 3 cut(s) 625, 952, 1001
BspANI GGCC 3 cut(s) 471, 628, 1034
BspCNI CTCAG 3 cut(s) 277, 781, 898
BspLI GGNNCC 1 cut(s) 296
BspPI GGATC 3 cut(s) 289, 302, 572
BspTNI GGTCTC 1 cut(s) 512
BsrI ACTGG 2 cut(s) 73, 1012
BssECI CCNNGG 1 cut(s) 502
BssMI GATC 4 cut(s) 294, 564, 682, 766
BssT1I CCWWGG 1 cut(s) 502
Bst2UI CCWGG 2 cut(s) 17, 216
Bst4CI ACNGT 2 cut(s) 49, 1074
Bst6I CTCTTC 2 cut(s) 339, 870
BstC8I GCNNGC 3 cut(s) 43, 759, 1066
BstDEI CTNAG 7 cut(s) 55, 285, 546, 789, 866, 906, 926
BstF5I GGATG 2 cut(s) 295, 556
BstKTI GATC 4 cut(s) 297, 567, 685, 769
BstMAI GTCTC 3 cut(s) 443, 512, 872
BstMBI GATC 4 cut(s) 294, 564, 682, 766
BstMWI GCNNNNNNNGC 3 cut(s) 105, 754, 890
BstNI CCWGG 2 cut(s) 17, 216
BstSCI CCNGG 2 cut(s) 15, 214
BstV1I GCAGC 2 cut(s) 25, 844
BstV2I GAAGAC 1 cut(s) 173
BstX2I RGATCY 1 cut(s) 294
BstYI RGATCY 1 cut(s) 294
BsuRI GGCC 3 cut(s) 471, 628, 1034
BtsCI GGATG 2 cut(s) 295, 556
BtsIMutI CAGTG 2 cut(s) 45, 66
Cac8I GCNNGC 3 cut(s) 43, 759, 1066
Cfr13I GGNCC 1 cut(s) 469
CseI GACGC 1 cut(s) 72
CspCI CAANNNNNGTGG 2 cut(s) 811, 846
CviAII CATG 3 cut(s) 299, 764, 1036
DdeI CTNAG 7 cut(s) 55, 285, 546, 789, 866, 906, 926
DpnI GATC 4 cut(s) 296, 566, 684, 768
DpnII GATC 4 cut(s) 294, 564, 682, 766
DrdI GACNNNNNNGTC 1 cut(s) 251
DseDI GACNNNNNNGTC 1 cut(s) 251
EaeI YGGCCR 2 cut(s) 626, 1032
Eam1104I CTCTTC 2 cut(s) 339, 870
EarI CTCTTC 2 cut(s) 339, 870
Eco130I CCWWGG 1 cut(s) 502
Eco31I GGTCTC 1 cut(s) 512
Eco32I GATATC 1 cut(s) 988
Eco57I CTGAAG 1 cut(s) 672
EcoRI GAATTC 1 cut(s) 349
EcoRII CCWGG 2 cut(s) 15, 214
EcoRV GATATC 1 cut(s) 988
EcoT14I CCWWGG 1 cut(s) 502
EcoT22I ATGCAT 1 cut(s) 275
ErhI CCWWGG 1 cut(s) 502
FaeI CATG 3 cut(s) 302, 767, 1039
FatI CATG 3 cut(s) 298, 763, 1035
FbaI TGATCA 2 cut(s) 682, 766
Fnu4HI GCNGC 4 cut(s) 39, 626, 858, 1002
FokI GGATG 2 cut(s) 302, 563
Fsp4HI GCNGC 4 cut(s) 39, 626, 858, 1002
FspBI CTAG 2 cut(s) 138, 324
GluI GCNGC 4 cut(s) 39, 626, 858, 1002
HaeIII GGCC 3 cut(s) 471, 628, 1034
HgaI GACGC 1 cut(s) 72
Hin1II CATG 3 cut(s) 302, 767, 1039
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HphI GGTGA 1 cut(s) 809
Hpy166II GTNNAC 2 cut(s) 397, 598
Hpy188I TCNGA 3 cut(s) 244, 721, 907
Hpy188III TCNNGA 4 cut(s) 148, 178, 482, 680
Hpy8I GTNNAC 2 cut(s) 397, 598
HpyAV CCTTC 3 cut(s) 127, 487, 703
HpyCH4III ACNGT 2 cut(s) 49, 1074
HpyCH4V TGCA 6 cut(s) 86, 273, 356, 577, 761, 860
HpyF10VI GCNNNNNNNGC 3 cut(s) 105, 754, 890
HpyF3I CTNAG 7 cut(s) 55, 285, 546, 789, 866, 906, 926
Hsp92II CATG 3 cut(s) 302, 767, 1039
Ksp22I TGATCA 2 cut(s) 682, 766
Kzo9I GATC 4 cut(s) 294, 564, 682, 766
Lsp1109I GCAGC 2 cut(s) 25, 844
LweI GCATC 2 cut(s) 816, 1051
MaeI CTAG 2 cut(s) 138, 324
MaeIII GTNAC 1 cut(s) 145
MalI GATC 4 cut(s) 296, 566, 684, 768
MboI GATC 4 cut(s) 294, 564, 682, 766
MboII GAAGA 8 cut(s) 178, 356, 449, 470, 670, 704, 887, 978
MflI RGATCY 1 cut(s) 294
MlsI TGGCCA 1 cut(s) 1034
MluCI AATT 9 cut(s) 161, 195, 229, 261, 278, 349, 644, 783, 915
MluNI TGGCCA 1 cut(s) 1034
MmeI TCCRAC 2 cut(s) 40, 1056
MnlI CCTC 3 cut(s) 280, 416, 555
Mox20I TGGCCA 1 cut(s) 1034
Mph1103I ATGCAT 1 cut(s) 275
MscI TGGCCA 1 cut(s) 1034
MseI TTAA 6 cut(s) 6, 198, 276, 777, 803, 1083
Msp20I TGGCCA 1 cut(s) 1034
MspR9I CCNGG 2 cut(s) 17, 216
Mva1269I GAATGC 1 cut(s) 99
MvaI CCWGG 2 cut(s) 17, 216
MwoI GCNNNNNNNGC 3 cut(s) 105, 754, 890
NdeII GATC 4 cut(s) 294, 564, 682, 766
NlaIII CATG 3 cut(s) 302, 767, 1039
NlaIV GGNNCC 1 cut(s) 296
NmuCI GTSAC 1 cut(s) 145
NsiI ATGCAT 1 cut(s) 275
PctI GAATGC 1 cut(s) 99
PflMI CCANNNNNTGG 1 cut(s) 367
PkrI GCNGC 4 cut(s) 40, 627, 859, 1003
PshBI ATTAAT 2 cut(s) 6, 198
PsiI TTATAA 1 cut(s) 33
Psp6I CCWGG 2 cut(s) 15, 214
PspGI CCWGG 2 cut(s) 15, 214
PspN4I GGNNCC 1 cut(s) 296
PspPI GGNCC 1 cut(s) 469
PsuI RGATCY 1 cut(s) 294
SaqAI TTAA 6 cut(s) 6, 198, 276, 777, 803, 1083
SatI GCNGC 4 cut(s) 39, 626, 858, 1002
Sau3AI GATC 4 cut(s) 294, 564, 682, 766
Sau96I GGNCC 1 cut(s) 469
ScrFI CCNGG 2 cut(s) 17, 216
SetI ASST 7 cut(s) 137, 368, 435, 759, 777, 905, 975
SfaNI GCATC 2 cut(s) 816, 1051
SmlI CTYRAG 1 cut(s) 178
SmoI CTYRAG 1 cut(s) 178
Sse9I AATT 9 cut(s) 161, 195, 229, 261, 278, 349, 644, 783, 915
SsiI CCGC 3 cut(s) 625, 952, 1001
SspMI CTAG 2 cut(s) 138, 324
StyD4I CCNGG 2 cut(s) 15, 214
StyI CCWWGG 1 cut(s) 502
TaaI ACNGT 2 cut(s) 49, 1074
TaqI TCGA 1 cut(s) 567
TasI AATT 9 cut(s) 161, 195, 229, 261, 278, 349, 644, 783, 915
TauI GCSGC 2 cut(s) 628, 1004
Tru1I TTAA 6 cut(s) 6, 198, 276, 777, 803, 1083
Tru9I TTAA 6 cut(s) 6, 198, 276, 777, 803, 1083
TscAI CASTG 2 cut(s) 52, 73
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 2 cut(s) 38, 857
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 6 cut(s) 273, 567, 686, 864, 927, 948
TspRI CASTG 2 cut(s) 52, 73
Van91I CCANNNNNTGG 1 cut(s) 367
VspI ATTAAT 2 cut(s) 6, 198
XapI RAATTY 3 cut(s) 349, 644, 915
XspI CTAG 2 cut(s) 138, 324
Zsp2I ATGCAT 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.