RLG00000001749
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000615
Physical Location & Seq
Forward (+)
20087151 .. 20089182
2032 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001749

Sequence Viewer

Length: 642 bp
ATGTTGCCCGGGAACTTACCTTTCCTAATGCTGCTCTCTAGTGGTGTCACGACCACTACTGAATTGAAGACTGCTATCTTGAAAGATGGACAACAAATTAATGTTATAGACACTCCTGGTCTTTTTGATAATTCTGCCAGATCAGACTTTATTGGCAAAGAAATTGCCCAATGCATTAAATTGGCCGAGGATGGGATCCATGCTGTTCTTGTGGTTCTCTCAATTAGAACTCGCTTTACAAAAGAAGAGCAGTCTGCAATATGTAGCTTGGAAAATCTATTTGGACGTAAAATCTTTAACCATACGATTGTTGTCTTTACGGGAGGAGATGAGTTGGAAGAAGATGAGACTTTGGAAGATTATTTGGGCCGTGATTGCCCGAAGCCTTTGAAGGACTTCCTTGGTCTGTGTAGAAATCGCTGTGTGCTTTTTGATAACAAGACTGAGGATGAAAGCAAGAGGGTAGAACAAGTGCAGCGGCTACTCTCACTTGTAAACTTGGTTATAGCACAGAATGGTGGGTGGCCATACATGGATGCGAGATTTGCTAAAGTGAAGTCAGAACCCCTACTGGGGTTCGTTCACCAGTCTGTGCAATCTCCACAGGCAAAGTCCGGATGTGGATTTCTCTGCGAGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

214

Amino Acids

23.62

Weight (kDa)

5.18

Isoelectric Point (pI)

40.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIG1 PF04548 13 - 188 1.8e-58 AIG1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000615)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33970 AT1G33970 AT1G33970 AT1G33970 AT1G33970
fragaria_vesca FvH4_5g32530 FvH4_5g32530
malus_domestica MD15G1403700.v1.1
prunus_persica Prupe.1G549700_v2.0.a1 Prupe.1G549700_v2.0.a1
pyrus_communis pycom15g36100
rosa_chinensis RchiOBHm_Chr7g0226331 RchiOBHm_Chr7g0229101 RchiOBHm_Chr7g0229111 RchiOBHm_Chr7g0229141 RchiOBHm_Chr7g0229161 RchiOBHm_Chr7g0229171 RchiOBHm_Chr7g0229211 RchiOBHm_Chr7g0229241 RchiOBHm_Chr7g0229381 RchiOBHm_Chr7g0229761 RchiOBHm_Chr7g0229911
rosa_laevigata RLG00000000796 RLG00000001464 RLG00000001466 RLG00000001469 RLG00000001523 RLG00000001526 RLG00000001529 RLG00000001530 RLG00000001749 RLG00000001913 RLG00000002114 RLG00000002115 RLG00000023248 RLG00000023250
rosa_multiflora Rmu_co8281135.1_g000001 Rmu_sc0000271.1_g000002 Rmu_sc0000271.1_g000007 Rmu_sc0000271.1_g000014 Rmu_sc0000693.1_g000012 Rmu_sc0000693.1_g000015 Rmu_sc0000693.1_g000023 Rmu_sc0001044.1_g000005 Rmu_sc0006689.1_g000007 Rmu_sc0012733.1_g000005
rosa_roxburghii Rroxscaffold_3G00230540 Rroxscaffold_3G00230590 Rroxscaffold_3G00230600 Rroxscaffold_3G00230700 Rroxscaffold_3G00230710 Rroxscaffold_3G00232980 Rroxscaffold_3G00237610
rosa_rugosa Rorug07G0203800 Rorug07G0203900 Rorug07G0256100 Rorug07G0256400 Rorug07G0256400 Rorug07G0256400 Rorug07G0256500 Rorug07G0256600 Rorug07G0256600 Rorug07G0257100 Rorug07G0257200 Rorug07G0257300 Rorug07G0257400
rosa_samantha Rh7DG401100 Rh7DG401300 Rh7DG401900 Rh7DG402100 Rh7DG402300 Rh7DG402700
rosa_wichuraiana Rw0G001910 Rw0G001930 Rw0G001940 Rw7G033790 Rw7G033810 Rw7G033840 Rw7G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 614
AciI CCGC 1 cut(s) 478
AclWI GGATC 2 cut(s) 190, 203
AcoI YGGCCR 2 cut(s) 183, 524
AfiI CCNNNNNNNGG 3 cut(s) 192, 572, 573
AgsI TTSAA 3 cut(s) 67, 82, 391
AjnI CCWGG 1 cut(s) 115
AjuI GAANNNNNNNTTGG 2 cut(s) 264, 296
AluBI AGCT 1 cut(s) 267
AluI AGCT 1 cut(s) 267
Alw26I GTCTC 1 cut(s) 341
AlwI GGATC 2 cut(s) 190, 203
Ama87I CYCGRG 1 cut(s) 8
Aor13HI TCCGGA 1 cut(s) 614
AoxI GGCC 3 cut(s) 183, 367, 524
ApeKI GCWGC 2 cut(s) 31, 475
AseI ATTAAT 1 cut(s) 99
Asp700I GAANNNNTTC 1 cut(s) 395
AspS9I GGNCC 1 cut(s) 367
AsuC2I CCSGG 2 cut(s) 9, 10
AsuHPI GGTGA 1 cut(s) 575
AvaI CYCGRG 1 cut(s) 8
BalI TGGCCA 1 cut(s) 526
BamHI GGATCC 1 cut(s) 195
BbsI GAAGAC 1 cut(s) 74
BbvI GCAGC 2 cut(s) 18, 487
BccI CCATC 2 cut(s) 80, 185
BceAI ACGGC 1 cut(s) 354
BciT130I CCWGG 1 cut(s) 117
BcnI CCSGG 2 cut(s) 9, 10
BcoDI GTCTC 1 cut(s) 341
BfaI CTAG 1 cut(s) 39
BisI GCNGC 3 cut(s) 32, 476, 479
BlsI GCNGC 3 cut(s) 33, 477, 480
Bme1390I CCNGG 3 cut(s) 9, 10, 117
BmeT110I CYCGRG 1 cut(s) 8
BmgT120I GGNCC 1 cut(s) 367
BmiI GGNNCC 1 cut(s) 197
BmrFI CCNGG 3 cut(s) 9, 10, 117
BmrI ACTGGG 1 cut(s) 581
BmsI GCATC 1 cut(s) 526
BmuI ACTGGG 1 cut(s) 581
BpiI GAAGAC 1 cut(s) 74
BpuMI CCSGG 2 cut(s) 9, 10
BsaJI CCNNGG 3 cut(s) 8, 186, 400
BsaWI WCCGGW 1 cut(s) 614
Bsc4I CCNNNNNNNGG 3 cut(s) 192, 572, 573
Bse1I ACTGG 2 cut(s) 576, 586
BseAI TCCGGA 1 cut(s) 614
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 3 cut(s) 8, 186, 400
BseGI GGATG 4 cut(s) 196, 454, 541, 623
BseLI CCNNNNNNNGG 3 cut(s) 192, 572, 573
BseMII CTCAG 1 cut(s) 435
BseNI ACTGG 2 cut(s) 576, 586
BseRI GAGGAG 1 cut(s) 339
BseXI GCAGC 2 cut(s) 18, 487
BsgI GTGCAG 1 cut(s) 494
BshFI GGCC 3 cut(s) 185, 369, 526
BsiHKCI CYCGRG 1 cut(s) 8
BsiSI CCGG 2 cut(s) 9, 615
BslI CCNNNNNNNGG 3 cut(s) 192, 572, 573
BsmAI GTCTC 1 cut(s) 341
BsnI GGCC 3 cut(s) 185, 369, 526
BsoBI CYCGRG 1 cut(s) 8
Bsp13I TCCGGA 1 cut(s) 614
Bsp143I GATC 2 cut(s) 140, 195
BspACI CCGC 1 cut(s) 478
BspANI GGCC 3 cut(s) 185, 369, 526
BspCNI CTCAG 1 cut(s) 436
BspEI TCCGGA 1 cut(s) 614
BspLI GGNNCC 1 cut(s) 197
BspPI GGATC 2 cut(s) 190, 203
BspQI GCTCTTC 1 cut(s) 240
BsrI ACTGG 2 cut(s) 576, 586
BssECI CCNNGG 3 cut(s) 8, 186, 400
BssMI GATC 2 cut(s) 140, 195
BssT1I CCWWGG 1 cut(s) 400
Bst2UI CCWGG 1 cut(s) 117
Bst6I CTCTTC 1 cut(s) 240
BstDEI CTNAG 1 cut(s) 444
BstF5I GGATG 4 cut(s) 196, 454, 541, 623
BstKTI GATC 2 cut(s) 143, 198
BstMAI GTCTC 1 cut(s) 341
BstMBI GATC 2 cut(s) 140, 195
BstMWI GCNNNNNNNGC 2 cut(s) 375, 545
BstNI CCWGG 1 cut(s) 117
BstSCI CCNGG 3 cut(s) 7, 8, 115
BstV1I GCAGC 2 cut(s) 18, 487
BstV2I GAAGAC 1 cut(s) 74
BstX2I RGATCY 1 cut(s) 195
BstYI RGATCY 1 cut(s) 195
BsuRI GGCC 3 cut(s) 185, 369, 526
BtsCI GGATG 4 cut(s) 196, 454, 541, 623
Cfr13I GGNCC 1 cut(s) 367
Cfr9I CCCGGG 1 cut(s) 8
CviAII CATG 2 cut(s) 200, 532
CviJI RGCY 6 cut(s) 185, 267, 369, 385, 481, 526
CviKI_1 RGCY 6 cut(s) 185, 267, 369, 385, 481, 526
DdeI CTNAG 1 cut(s) 444
DpnI GATC 2 cut(s) 142, 197
DpnII GATC 2 cut(s) 140, 195
EaeI YGGCCR 2 cut(s) 183, 524
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
Eco130I CCWWGG 1 cut(s) 400
Eco88I CYCGRG 1 cut(s) 8
EcoRII CCWGG 1 cut(s) 115
EcoT14I CCWWGG 1 cut(s) 400
EcoT22I ATGCAT 1 cut(s) 176
ErhI CCWWGG 1 cut(s) 400
FaeI CATG 2 cut(s) 203, 535
FaiI YATR 7 cut(s) 107, 201, 262, 303, 506, 529, 533
FatI CATG 2 cut(s) 199, 531
Fnu4HI GCNGC 3 cut(s) 32, 476, 479
FokI GGATG 4 cut(s) 203, 461, 548, 630
Fsp4HI GCNGC 3 cut(s) 32, 476, 479
FspBI CTAG 1 cut(s) 39
GluI GCNGC 3 cut(s) 32, 476, 479
HaeIII GGCC 3 cut(s) 185, 369, 526
HapII CCGG 2 cut(s) 9, 615
Hin1II CATG 2 cut(s) 203, 535
HpaII CCGG 2 cut(s) 9, 615
HphI GGTGA 1 cut(s) 575
Hpy166II GTNNAC 2 cut(s) 496, 583
Hpy188I TCNGA 2 cut(s) 145, 562
Hpy188III TCNNGA 3 cut(s) 49, 79, 615
Hpy8I GTNNAC 2 cut(s) 496, 583
HpyAV CCTTC 1 cut(s) 385
HpyCH4IV ACGT 1 cut(s) 286
HpyCH4V TGCA 4 cut(s) 174, 257, 475, 595
HpyF10VI GCNNNNNNNGC 2 cut(s) 375, 545
HpyF3I CTNAG 1 cut(s) 444
HpySE526I ACGT 1 cut(s) 286
Hsp92II CATG 2 cut(s) 203, 535
Kpn2I TCCGGA 1 cut(s) 614
Kzo9I GATC 2 cut(s) 140, 195
LguI GCTCTTC 1 cut(s) 240
LpnPI CCDG 8 cut(s) 22, 102, 129, 151, 557, 590, 599, 628
Lsp1109I GCAGC 2 cut(s) 18, 487
LweI GCATC 1 cut(s) 526
MaeI CTAG 1 cut(s) 39
MaeII ACGT 1 cut(s) 286
MaeIII GTNAC 1 cut(s) 46
MalI GATC 2 cut(s) 142, 197
MboI GATC 2 cut(s) 140, 195
MboII GAAGA 5 cut(s) 79, 257, 350, 353, 368
MflI RGATCY 1 cut(s) 195
MlsI TGGCCA 1 cut(s) 526
MluCI AATT 6 cut(s) 62, 96, 130, 162, 179, 222
MluNI TGGCCA 1 cut(s) 526
MmeI TCCRAC 1 cut(s) 315
MnlI CCTC 5 cut(s) 181, 317, 439, 453, 628
Mox20I TGGCCA 1 cut(s) 526
Mph1103I ATGCAT 1 cut(s) 176
MroI TCCGGA 1 cut(s) 614
MroXI GAANNNNTTC 1 cut(s) 395
MscI TGGCCA 1 cut(s) 526
MseI TTAA 3 cut(s) 99, 177, 297
Msp20I TGGCCA 1 cut(s) 526
MspA1I CMGCKG 1 cut(s) 478
MspI CCGG 2 cut(s) 9, 615
MspR9I CCNGG 3 cut(s) 9, 10, 117
MvaI CCWGG 1 cut(s) 117
MwoI GCNNNNNNNGC 2 cut(s) 375, 545
NciI CCSGG 2 cut(s) 9, 10
NdeII GATC 2 cut(s) 140, 195
NlaIII CATG 2 cut(s) 203, 535
NlaIV GGNNCC 1 cut(s) 197
NmeAIII GCCGAG 1 cut(s) 211
NmuCI GTSAC 1 cut(s) 46
NsiI ATGCAT 1 cut(s) 176
PciSI GCTCTTC 1 cut(s) 240
PdmI GAANNNNTTC 1 cut(s) 395
PkrI GCNGC 3 cut(s) 33, 477, 480
PshBI ATTAAT 1 cut(s) 99
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 197
PspPI GGNCC 1 cut(s) 367
PsrI GAACNNNNNNTAC 2 cut(s) 220, 252
PsuI RGATCY 1 cut(s) 195
SapI GCTCTTC 1 cut(s) 240
SaqAI TTAA 3 cut(s) 99, 177, 297
SatI GCNGC 3 cut(s) 32, 476, 479
Sau3AI GATC 2 cut(s) 140, 195
Sau96I GGNCC 1 cut(s) 367
ScrFI CCNGG 3 cut(s) 9, 10, 117
SetI ASST 3 cut(s) 22, 269, 289
SfaNI GCATC 1 cut(s) 526
SmaI CCCGGG 1 cut(s) 10
Sse9I AATT 6 cut(s) 62, 96, 130, 162, 179, 222
SsiI CCGC 1 cut(s) 478
SspMI CTAG 1 cut(s) 39
StyD4I CCNGG 3 cut(s) 7, 8, 115
StyI CCWWGG 1 cut(s) 400
TaiI ACGT 1 cut(s) 289
TasI AATT 6 cut(s) 62, 96, 130, 162, 179, 222
TauI GCSGC 1 cut(s) 481
Tru1I TTAA 3 cut(s) 99, 177, 297
Tru9I TTAA 3 cut(s) 99, 177, 297
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 2 cut(s) 31, 475
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 1 cut(s) 465
TspMI CCCGGG 1 cut(s) 8
VspI ATTAAT 1 cut(s) 99
XmaI CCCGGG 1 cut(s) 8
XmnI GAANNNNTTC 1 cut(s) 395
XspI CTAG 1 cut(s) 39
Zsp2I ATGCAT 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.