Rmu_sc0000271.1_g000014
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000271.1
OG0000615
Physical Location & Seq
Reverse (-)
64823 .. 67044
2222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000271.1_g000014.1.cds

Sequence Viewer

Length: 1008 bp
atgggtggaagttcgattgatgatgactgggagcttcccttttccaatgctgctcgcactgtggtcttagttggacgcactggtaatggaaaaagtgcgacaggcaacagcattcttggcaaaaaagctttcaattccaagcgtagctctaatggtgtcacgagcacctgtgaattaaagactgctatcttgagagatggacagcaagttaatgttatagacactcctggtctttttgattattctgccaaatcagacttcattggcaaagaaattgtcaaatgcattaatttggctaaggatggaatccatgctgttcttgtggttttctcaactagaactcgcttttctcaagaagaggagtctgcaatccttagcttgcaaactctatttggaagtaaaatctttgactatatgattgttgtctttacgggaggagatgactttgaagaaaatgatgagactttggaagattatttgggccgtgattgcccggagcctttaaaggaaatccttggtctatgtggaaatcgtcgtgtgctttttgataacaagactaaggatgaaagcaagagggtcgaacaagtgcagcagcttctctcgcttgtaaactcggttatagcacagaatggtgggcgaccatacacggatgagatatttgctgaagttaagaaaggggctatgaaacttcgtgatcaacaagaagaggttgcttctttgaaggggtattcaaaacgagaaatatctcatttgaacgagcagatgcagctggctcatgatctccagcttaaacgaattactgagatggttgagttaaagatgagagaaacaactatgatgcttgaacaaaagttagcagatgaacatgctgcacgactaagagcagaagagactgcccaagaggctcaacaaaggtctgaggatgaaatccgaaagcttagagacgatctacaaaaagcagaggaagagcttcggaaaagagttgaaagcaagtgtgctattctttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

335

Amino Acids

37.68

Weight (kDa)

5.28

Isoelectric Point (pI)

46.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000615)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33970 AT1G33970 AT1G33970 AT1G33970 AT1G33970
fragaria_vesca FvH4_5g32530 FvH4_5g32530
malus_domestica MD15G1403700.v1.1
prunus_persica Prupe.1G549700_v2.0.a1 Prupe.1G549700_v2.0.a1
pyrus_communis pycom15g36100
rosa_chinensis RchiOBHm_Chr7g0226331 RchiOBHm_Chr7g0229101 RchiOBHm_Chr7g0229111 RchiOBHm_Chr7g0229141 RchiOBHm_Chr7g0229161 RchiOBHm_Chr7g0229171 RchiOBHm_Chr7g0229211 RchiOBHm_Chr7g0229241 RchiOBHm_Chr7g0229381 RchiOBHm_Chr7g0229761 RchiOBHm_Chr7g0229911
rosa_laevigata RLG00000000796 RLG00000001464 RLG00000001466 RLG00000001469 RLG00000001523 RLG00000001526 RLG00000001529 RLG00000001530 RLG00000001749 RLG00000001913 RLG00000002114 RLG00000002115 RLG00000023248 RLG00000023250
rosa_multiflora Rmu_co8281135.1_g000001 Rmu_sc0000271.1_g000002 Rmu_sc0000271.1_g000007 Rmu_sc0000271.1_g000014 Rmu_sc0000693.1_g000012 Rmu_sc0000693.1_g000015 Rmu_sc0000693.1_g000023 Rmu_sc0001044.1_g000005 Rmu_sc0006689.1_g000007 Rmu_sc0012733.1_g000005
rosa_roxburghii Rroxscaffold_3G00230540 Rroxscaffold_3G00230590 Rroxscaffold_3G00230600 Rroxscaffold_3G00230700 Rroxscaffold_3G00230710 Rroxscaffold_3G00232980 Rroxscaffold_3G00237610
rosa_rugosa Rorug07G0203800 Rorug07G0203900 Rorug07G0256100 Rorug07G0256400 Rorug07G0256400 Rorug07G0256400 Rorug07G0256500 Rorug07G0256600 Rorug07G0256600 Rorug07G0257100 Rorug07G0257200 Rorug07G0257300 Rorug07G0257400
rosa_samantha Rh7DG401100 Rh7DG401300 Rh7DG401900 Rh7DG402100 Rh7DG402300 Rh7DG402700
rosa_wichuraiana Rw0G001910 Rw0G001930 Rw0G001940 Rw7G033790 Rw7G033810 Rw7G033840 Rw7G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 684
AgsI TTSAA 7 cut(s) 133, 449, 721, 732, 754, 845, 986
AjnI CCWGG 1 cut(s) 226
AjuI GAANNNNNNNTTGG 2 cut(s) 242, 274
AluBI AGCT 9 cut(s) 34, 128, 147, 378, 595, 769, 787, 937, 970
AluI AGCT 9 cut(s) 34, 128, 147, 378, 595, 769, 787, 937, 970
Alw21I GWGCWC 1 cut(s) 167
Alw26I GTCTC 3 cut(s) 455, 884, 936
AoxI GGCC 1 cut(s) 481
ApeKI GCWGC 5 cut(s) 50, 589, 592, 766, 869
ArsI GACNNNNNNTTYG 2 cut(s) 261, 293
AseI ATTAAT 1 cut(s) 288
Asp700I GAANNNNTTC 1 cut(s) 969
AspS9I GGNCC 1 cut(s) 481
AsuC2I CCSGG 1 cut(s) 494
BauI CACGAG 1 cut(s) 160
Bbv12I GWGCWC 1 cut(s) 167
BbvI GCAGC 5 cut(s) 37, 601, 604, 778, 856
BccI CCATC 3 cut(s) 191, 296, 799
BceAI ACGGC 1 cut(s) 468
BcgI CGANNNNNNTGC 2 cut(s) 559, 593
BciT130I CCWGG 1 cut(s) 228
BclI TGATCA 1 cut(s) 694
BcnI CCSGG 1 cut(s) 494
BcoDI GTCTC 3 cut(s) 455, 884, 936
BfaI CTAG 1 cut(s) 336
BglI GCCNNNNNGGC 1 cut(s) 902
BisI GCNGC 5 cut(s) 51, 590, 593, 767, 870
BlsI GCNGC 5 cut(s) 52, 591, 594, 768, 871
Bme1390I CCNGG 2 cut(s) 228, 494
BmgT120I GGNCC 1 cut(s) 481
BmiI GGNNCC 1 cut(s) 498
BmrFI CCNGG 2 cut(s) 228, 494
BmrI ACTGGG 1 cut(s) 37
BmsI GCATC 2 cut(s) 753, 828
BmuI ACTGGG 1 cut(s) 37
BpmI CTGGAG 1 cut(s) 767
Bpu10I CCTNAGC 2 cut(s) 297, 374
BpuEI CTTGAG 2 cut(s) 211, 336
BpuMI CCSGG 1 cut(s) 494
BsaJI CCNNGG 1 cut(s) 514
Bse1I ACTGG 2 cut(s) 32, 85
BseBI CCWGG 1 cut(s) 228
BseDI CCNNGG 1 cut(s) 514
BseGI GGATG 4 cut(s) 307, 568, 655, 928
BseMII CTCAG 2 cut(s) 792, 909
BseNI ACTGG 2 cut(s) 32, 85
BseRI GAGGAG 2 cut(s) 374, 450
BseXI GCAGC 5 cut(s) 37, 601, 604, 778, 856
BsgI GTGCAG 2 cut(s) 608, 855
BshFI GGCC 1 cut(s) 483
BsiHKAI GWGCWC 1 cut(s) 167
BsiSI CCGG 1 cut(s) 494
BsmAI GTCTC 3 cut(s) 455, 884, 936
BsmBI CGTCTC 1 cut(s) 936
BsmI GAATGC 1 cut(s) 111
BsnI GGCC 1 cut(s) 483
Bsp1286I GDGCHC 1 cut(s) 167
Bsp143I GATC 3 cut(s) 694, 778, 946
BspANI GGCC 1 cut(s) 483
BspCNI CTCAG 2 cut(s) 793, 910
BspHI TCATGA 1 cut(s) 775
BspLI GGNNCC 1 cut(s) 498
BspQI GCTCTTC 1 cut(s) 960
BsrI ACTGG 2 cut(s) 32, 85
BssECI CCNNGG 1 cut(s) 514
BssMI GATC 3 cut(s) 694, 778, 946
BssSI CACGAG 1 cut(s) 160
BssT1I CCWWGG 1 cut(s) 514
Bst2BI CACGAG 1 cut(s) 160
Bst2UI CCWGG 1 cut(s) 228
Bst4CI ACNGT 1 cut(s) 61
Bst6I CTCTTC 4 cut(s) 351, 699, 882, 960
BstC8I GCNNGC 3 cut(s) 55, 380, 771
BstDEI CTNAG 8 cut(s) 67, 297, 374, 558, 801, 878, 918, 938
BstF5I GGATG 4 cut(s) 307, 568, 655, 928
BstKTI GATC 3 cut(s) 697, 781, 949
BstMAI GTCTC 3 cut(s) 455, 884, 936
BstMBI GATC 3 cut(s) 694, 778, 946
BstMWI GCNNNNNNNGC 5 cut(s) 117, 489, 601, 766, 902
BstNI CCWGG 1 cut(s) 228
BstNSI RCATGY 1 cut(s) 869
BstSCI CCNGG 2 cut(s) 226, 492
BstV1I GCAGC 5 cut(s) 37, 601, 604, 778, 856
BsuRI GGCC 1 cut(s) 483
BtsCI GGATG 4 cut(s) 307, 568, 655, 928
BtsIMutI CAGTG 2 cut(s) 57, 78
Cac8I GCNNGC 3 cut(s) 55, 380, 771
CciI TCATGA 1 cut(s) 775
Cfr13I GGNCC 1 cut(s) 481
CseI GACGC 1 cut(s) 84
CviAII CATG 3 cut(s) 311, 776, 866
DdeI CTNAG 8 cut(s) 67, 297, 374, 558, 801, 878, 918, 938
DpnI GATC 3 cut(s) 696, 780, 948
DpnII GATC 3 cut(s) 694, 778, 946
DraI TTTAAA 1 cut(s) 504
Eam1104I CTCTTC 4 cut(s) 351, 699, 882, 960
EarI CTCTTC 4 cut(s) 351, 699, 882, 960
Eco130I CCWWGG 1 cut(s) 514
Eco57I CTGAAG 1 cut(s) 684
EcoRII CCWGG 1 cut(s) 226
EcoT14I CCWWGG 1 cut(s) 514
EcoT22I ATGCAT 1 cut(s) 287
ErhI CCWWGG 1 cut(s) 514
Esp3I CGTCTC 1 cut(s) 936
FaeI CATG 3 cut(s) 314, 779, 869
FatI CATG 3 cut(s) 310, 775, 865
FbaI TGATCA 1 cut(s) 694
Fnu4HI GCNGC 5 cut(s) 51, 590, 593, 767, 870
FokI GGATG 4 cut(s) 314, 575, 662, 935
Fsp4HI GCNGC 5 cut(s) 51, 590, 593, 767, 870
FspBI CTAG 1 cut(s) 336
GluI GCNGC 5 cut(s) 51, 590, 593, 767, 870
GsuI CTGGAG 1 cut(s) 767
HaeIII GGCC 1 cut(s) 483
HapII CCGG 1 cut(s) 494
HgaI GACGC 1 cut(s) 84
Hin1II CATG 3 cut(s) 314, 779, 869
HindIII AAGCTT 2 cut(s) 126, 935
HinfI GANTC 2 cut(s) 306, 362
HpaII CCGG 1 cut(s) 494
Hpy166II GTNNAC 1 cut(s) 610
Hpy188I TCNGA 4 cut(s) 256, 919, 932, 975
Hpy188III TCNNGA 5 cut(s) 160, 190, 353, 692, 776
Hpy8I GTNNAC 1 cut(s) 610
Hpy99I CGWCG 1 cut(s) 537
HpyAV CCTTC 1 cut(s) 715
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4V TGCA 6 cut(s) 285, 368, 382, 589, 766, 872
HpyF10VI GCNNNNNNNGC 5 cut(s) 117, 489, 601, 766, 902
HpyF3I CTNAG 8 cut(s) 67, 297, 374, 558, 801, 878, 918, 938
Hsp92II CATG 3 cut(s) 314, 779, 869
Ksp22I TGATCA 1 cut(s) 694
Kzo9I GATC 3 cut(s) 694, 778, 946
LguI GCTCTTC 1 cut(s) 960
LmnI GCTCC 2 cut(s) 31, 496
LpnPI CCDG 9 cut(s) 13, 66, 87, 181, 213, 240, 507, 755, 797
Lsp1109I GCAGC 5 cut(s) 37, 601, 604, 778, 856
LweI GCATC 2 cut(s) 753, 828
MaeI CTAG 1 cut(s) 336
MaeIII GTNAC 1 cut(s) 157
MalI GATC 3 cut(s) 696, 780, 948
MboI GATC 3 cut(s) 694, 778, 946
MboII GAAGA 6 cut(s) 368, 461, 482, 716, 899, 977
MhlI GDGCHC 1 cut(s) 167
MluCI AATT 5 cut(s) 133, 173, 273, 289, 795
MlyI GAGTC 1 cut(s) 371
MmeI TCCRAC 1 cut(s) 52
MnlI CCTC 7 cut(s) 352, 428, 567, 700, 895, 913, 955
Mph1103I ATGCAT 1 cut(s) 287
MroXI GAANNNNTTC 1 cut(s) 969
MseI TTAA 8 cut(s) 176, 210, 288, 503, 669, 789, 815, 1006
MspA1I CMGCKG 1 cut(s) 769
MspI CCGG 1 cut(s) 494
MspR9I CCNGG 2 cut(s) 228, 494
Mva1269I GAATGC 1 cut(s) 111
MvaI CCWGG 1 cut(s) 228
MwoI GCNNNNNNNGC 5 cut(s) 117, 489, 601, 766, 902
NciI CCSGG 1 cut(s) 494
NdeII GATC 3 cut(s) 694, 778, 946
NlaIII CATG 3 cut(s) 314, 779, 869
NlaIV GGNNCC 1 cut(s) 498
NmuCI GTSAC 1 cut(s) 157
NsiI ATGCAT 1 cut(s) 287
NspI RCATGY 1 cut(s) 869
PagI TCATGA 1 cut(s) 775
PciSI GCTCTTC 1 cut(s) 960
PctI GAATGC 1 cut(s) 111
PdmI GAANNNNTTC 1 cut(s) 969
PfeI GAWTC 1 cut(s) 306
PkrI GCNGC 5 cut(s) 52, 591, 594, 768, 871
PleI GAGTC 1 cut(s) 370
PpsI GAGTC 1 cut(s) 370
PshBI ATTAAT 1 cut(s) 288
Psp6I CCWGG 1 cut(s) 226
PspGI CCWGG 1 cut(s) 226
PspN4I GGNNCC 1 cut(s) 498
PspPI GGNCC 1 cut(s) 481
PvuII CAGCTG 1 cut(s) 769
SapI GCTCTTC 1 cut(s) 960
SaqAI TTAA 8 cut(s) 176, 210, 288, 503, 669, 789, 815, 1006
SatI GCNGC 5 cut(s) 51, 590, 593, 767, 870
Sau3AI GATC 3 cut(s) 694, 778, 946
Sau96I GGNCC 1 cut(s) 481
SchI GAGTC 1 cut(s) 371
ScrFI CCNGG 2 cut(s) 228, 494
SduI GDGCHC 1 cut(s) 167
SfaNI GCATC 2 cut(s) 753, 828
SmlI CTYRAG 2 cut(s) 190, 351
SmoI CTYRAG 2 cut(s) 190, 351
Sse9I AATT 5 cut(s) 133, 173, 273, 289, 795
SspMI CTAG 1 cut(s) 336
StyD4I CCNGG 2 cut(s) 226, 492
StyI CCWWGG 1 cut(s) 514
TaaI ACNGT 1 cut(s) 61
TaqI TCGA 2 cut(s) 14, 579
TasI AATT 5 cut(s) 133, 173, 273, 289, 795
TfiI GAWTC 1 cut(s) 306
Tru1I TTAA 8 cut(s) 176, 210, 288, 503, 669, 789, 815, 1006
Tru9I TTAA 8 cut(s) 176, 210, 288, 503, 669, 789, 815, 1006
TscAI CASTG 2 cut(s) 64, 85
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 5 cut(s) 50, 589, 592, 766, 869
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 5 cut(s) 250, 579, 698, 876, 939
TspGWI ACGGA 1 cut(s) 662
TspRI CASTG 2 cut(s) 64, 85
VspI ATTAAT 1 cut(s) 288
XceI RCATGY 1 cut(s) 869
XmnI GAANNNNTTC 1 cut(s) 969
XspI CTAG 1 cut(s) 336
Zsp2I ATGCAT 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.