Rorug07G0256400
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000615
Physical Location & Seq
Forward (+)
23947706 .. 23961152
13447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0256400.1

Sequence Viewer

Length: 1203 bp
ATGATGGGCTCGCATAACCTACCATTCAAAGTTGGGGAAGACATAGAATGGAGTTCATTTATGAAAGGTTATCGTGGTGCGTGGTTCCGATGTAAGATAAAAGATATTGGCCGGAGAAATGGTCAACTGTCATGTGCCTTGGAATATTATGACTTTCCAGATGAAAAATCAAAATGGGAAAAAATATATCAAAGCAACCCTGCTGATAGTAAAAGGACAAGAAAAGAAAAGATATTGATGATGCGTCCTCCCTTTCCTCCTATGTATAATGAAAGTAAAAGGCCTGATGTCAGTACTATATCGGAAGTGGTAGTTATTGTCAGTGATGTCTGGAAGGTGGGAGATTTAGTTGATTGGTGGAAGGATGATTGTTATTGGTCTGGAAAAGTAGCAGAAGTATTAGGGGATGAAAAAGTTAAGGTTGAGTTGCCACTTCCTCCTGCTGGTGAAGGAGTTGAAGGAGAGACCTATGAGGCTTCTTGCAAGGACTTGCGTGCATCCCTGAATTGGTCTCTAGAAGGCGGTTGGACAGTGCCTACATCCAAGGAGAATGAAAATGGGCGTCCTTGTGCTCGAGTAATTAAGCCTGATAGTCAAGGGGACATTGCAAGCTTGATGGTCCAATCTTTGGGTGATGGAAGAAGGGATGCCCAAGCTATTGCTGGTGTCAAGCAACCTTTAACAGGAAAGGACACAACAGCTGCAGAAACAAATATGGAGTCTGATGTGGCAGATAGTGGGTTTGAGAAGATGAGTTGCCCAGATACTGTTTCAAAATTGCATGTTAAACATGCATCAAATGAAATGGAGGCAACTGCAACTAGGGTAGACATACTTGATAACAAAAAGCCCTTAAAGAGAAAGAGAACTCATGTGGCAGATAGTGGGTTTGGGAAGATGAGTTGCTCAGATAGCGTTTCAAAATTGCATGTTGAAGAGGCATCAAATGAAATGGAGGCAACTACAACAAGGGTACACGTACTTGATAACACTATGCCCTTAAAGAGGAAGAAAACTCATGAAGACATAGTGTTAAATTCAACGAACTCTGATACATTAGAAGCTGCACTTTTGGACTTGGAAGAACTTGTAAACCGGGTTAAATGGATGAAGGGTATCTTGGAGATTGGATTACCTTTGACTGGTGCGATGCAACCCCGTTGGAAATTTCTTGGAGATCATTCCTTGTCCACCTCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

400

Amino Acids

44.76

Weight (kDa)

6.0

Isoelectric Point (pI)

37.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 12 - 86 1.3e-09 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000615)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33970 AT1G33970 AT1G33970 AT1G33970 AT1G33970
fragaria_vesca FvH4_5g32530 FvH4_5g32530
malus_domestica MD15G1403700.v1.1
prunus_persica Prupe.1G549700_v2.0.a1 Prupe.1G549700_v2.0.a1
pyrus_communis pycom15g36100
rosa_chinensis RchiOBHm_Chr7g0226331 RchiOBHm_Chr7g0229101 RchiOBHm_Chr7g0229111 RchiOBHm_Chr7g0229141 RchiOBHm_Chr7g0229161 RchiOBHm_Chr7g0229171 RchiOBHm_Chr7g0229211 RchiOBHm_Chr7g0229241 RchiOBHm_Chr7g0229381 RchiOBHm_Chr7g0229761 RchiOBHm_Chr7g0229911
rosa_laevigata RLG00000000796 RLG00000001464 RLG00000001466 RLG00000001469 RLG00000001523 RLG00000001526 RLG00000001529 RLG00000001530 RLG00000001749 RLG00000001913 RLG00000002114 RLG00000002115 RLG00000023248 RLG00000023250
rosa_multiflora Rmu_co8281135.1_g000001 Rmu_sc0000271.1_g000002 Rmu_sc0000271.1_g000007 Rmu_sc0000271.1_g000014 Rmu_sc0000693.1_g000012 Rmu_sc0000693.1_g000015 Rmu_sc0000693.1_g000023 Rmu_sc0001044.1_g000005 Rmu_sc0006689.1_g000007 Rmu_sc0012733.1_g000005
rosa_roxburghii Rroxscaffold_3G00230540 Rroxscaffold_3G00230590 Rroxscaffold_3G00230600 Rroxscaffold_3G00230700 Rroxscaffold_3G00230710 Rroxscaffold_3G00232980 Rroxscaffold_3G00237610
rosa_rugosa Rorug07G0203800 Rorug07G0203900 Rorug07G0256100 Rorug07G0256400 Rorug07G0256400 Rorug07G0256400 Rorug07G0256500 Rorug07G0256600 Rorug07G0256600 Rorug07G0257100 Rorug07G0257200 Rorug07G0257300 Rorug07G0257400
rosa_samantha Rh7DG401100 Rh7DG401300 Rh7DG401900 Rh7DG402100 Rh7DG402300 Rh7DG402700
rosa_wichuraiana Rw0G001910 Rw0G001930 Rw0G001940 Rw7G033790 Rw7G033810 Rw7G033840 Rw7G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 628
AccI GTMKAC 1 cut(s) 828
AciI CCGC 1 cut(s) 522
AcoI YGGCCR 1 cut(s) 109
AcsI RAATTY 2 cut(s) 1036, 1166
AcyI GRCGYC 1 cut(s) 562
AfaI GTAC 3 cut(s) 295, 975, 981
AfiI CCNNNNNNNGG 6 cut(s) 443, 507, 628, 683, 1005, 1142
AflIII ACRYGT 1 cut(s) 976
AgsI TTSAA 6 cut(s) 28, 458, 774, 921, 935, 1041
AjuI GAANNNNNNNTTGG 2 cut(s) 1103, 1135
AluBI AGCT 4 cut(s) 612, 656, 701, 1064
AluI AGCT 4 cut(s) 612, 656, 701, 1064
Alw21I GWGCWC 1 cut(s) 574
Alw26I GTCTC 2 cut(s) 458, 516
AlwNI CAGNNNCTG 1 cut(s) 767
Ama87I CYCGRG 1 cut(s) 573
AoxI GGCC 2 cut(s) 109, 281
ApeKI GCWGC 2 cut(s) 701, 1064
ApoI RAATTY 2 cut(s) 1036, 1166
ArsI GACNNNNNNTTYG 2 cut(s) 704, 736
AspS9I GGNCC 1 cut(s) 619
AsuC2I CCSGG 1 cut(s) 1097
AsuHPI GGTGA 2 cut(s) 458, 644
AvaI CYCGRG 1 cut(s) 573
AvaII GGWCC 1 cut(s) 619
BanII GRGCYC 1 cut(s) 11
BbsI GAAGAC 2 cut(s) 45, 1029
Bbv12I GWGCWC 1 cut(s) 574
BbvI GCAGC 2 cut(s) 688, 1051
BccI CCATC 2 cut(s) 610, 629
BcnI CCSGG 1 cut(s) 1097
BcoDI GTCTC 2 cut(s) 458, 516
BfaI CTAG 2 cut(s) 515, 822
BfmI CTRYAG 1 cut(s) 702
BisI GCNGC 2 cut(s) 702, 1065
BlsI GCNGC 2 cut(s) 703, 1066
BmcAI AGTACT 1 cut(s) 295
Bme1390I CCNGG 1 cut(s) 1097
Bme18I GGWCC 1 cut(s) 619
BmeT110I CYCGRG 1 cut(s) 573
BmgT120I GGNCC 1 cut(s) 619
BmiI GGNNCC 1 cut(s) 86
BmrFI CCNGG 1 cut(s) 1097
BmsI GCATC 6 cut(s) 231, 506, 637, 803, 950, 1140
BpiI GAAGAC 2 cut(s) 45, 1029
BpuMI CCSGG 1 cut(s) 1097
BsaAI YACGTR 1 cut(s) 979
BsaHI GRCGYC 1 cut(s) 562
BsaI GGTCTC 2 cut(s) 458, 516
BsaJI CCNNGG 2 cut(s) 138, 543
BsaXI ACNNNNNCTCC 4 cut(s) 106, 136, 333, 363
Bsc4I CCNNNNNNNGG 6 cut(s) 443, 507, 628, 683, 1005, 1142
Bse1I ACTGG 1 cut(s) 1147
Bse3DI GCAATG 1 cut(s) 603
BseDI CCNNGG 2 cut(s) 138, 543
BseGI GGATG 6 cut(s) 370, 412, 497, 539, 652, 1113
BseLI CCNNNNNNNGG 6 cut(s) 443, 507, 628, 683, 1005, 1142
BseMI GCAATG 1 cut(s) 603
BseMII CTCAG 1 cut(s) 921
BseNI ACTGG 1 cut(s) 1147
BseXI GCAGC 2 cut(s) 688, 1051
BsgI GTGCAG 1 cut(s) 1050
BshFI GGCC 2 cut(s) 111, 283
BsiHKAI GWGCWC 1 cut(s) 574
BsiHKCI CYCGRG 1 cut(s) 573
BsiSI CCGG 2 cut(s) 112, 1096
BslFI GGGAC 1 cut(s) 614
BslI CCNNNNNNNGG 6 cut(s) 443, 507, 628, 683, 1005, 1142
BsmAI GTCTC 2 cut(s) 458, 516
BsmFI GGGAC 1 cut(s) 614
BsnI GGCC 2 cut(s) 111, 283
Bso31I GGTCTC 2 cut(s) 458, 516
BsoBI CYCGRG 1 cut(s) 573
Bsp1286I GDGCHC 2 cut(s) 11, 574
Bsp143I GATC 1 cut(s) 1177
BspACI CCGC 1 cut(s) 522
BspANI GGCC 2 cut(s) 111, 283
BspCNI CTCAG 1 cut(s) 920
BspHI TCATGA 1 cut(s) 1018
BspLI GGNNCC 1 cut(s) 86
BspMAI CTGCAG 1 cut(s) 706
BspTNI GGTCTC 2 cut(s) 458, 516
BsrDI GCAATG 1 cut(s) 603
BsrI ACTGG 1 cut(s) 1147
BssECI CCNNGG 2 cut(s) 138, 543
BssMI GATC 1 cut(s) 1177
BssNI GRCGYC 1 cut(s) 562
BssT1I CCWWGG 2 cut(s) 138, 543
Bst4CI ACNGT 3 cut(s) 129, 532, 769
Bst6I CTCTTC 1 cut(s) 930
BstACI GRCGYC 1 cut(s) 562
BstBAI YACGTR 1 cut(s) 979
BstC8I GCNNGC 3 cut(s) 11, 495, 610
BstDEI CTNAG 1 cut(s) 907
BstENI CCTNNNNNAGG 2 cut(s) 681, 1003
BstF5I GGATG 6 cut(s) 370, 412, 497, 539, 652, 1113
BstKTI GATC 1 cut(s) 1180
BstMAI GTCTC 2 cut(s) 458, 516
BstMBI GATC 1 cut(s) 1177
BstMWI GCNNNNNNNGC 1 cut(s) 912
BstNSI RCATGY 3 cut(s) 785, 794, 932
BstSCI CCNGG 1 cut(s) 1095
BstSFI CTRYAG 1 cut(s) 702
BstV1I GCAGC 2 cut(s) 688, 1051
BstV2I GAAGAC 2 cut(s) 45, 1029
BsuRI GGCC 2 cut(s) 111, 283
BtgZI GCGATG 1 cut(s) 1163
BtsCI GGATG 6 cut(s) 370, 412, 497, 539, 652, 1113
BtsIMutI CAGTG 2 cut(s) 328, 537
Cac8I GCNNGC 3 cut(s) 11, 495, 610
CaiI CAGNNNCTG 1 cut(s) 767
CciI TCATGA 1 cut(s) 1018
Cfr13I GGNCC 1 cut(s) 619
CseI GACGC 2 cut(s) 233, 551
Csp6I GTAC 3 cut(s) 294, 974, 980
CviAII CATG 6 cut(s) 132, 782, 791, 872, 929, 1019
CviQI GTAC 3 cut(s) 294, 974, 980
DdeI CTNAG 1 cut(s) 907
DpnI GATC 1 cut(s) 1179
DpnII GATC 1 cut(s) 1177
EaeI YGGCCR 1 cut(s) 109
Eam1104I CTCTTC 1 cut(s) 930
EarI CTCTTC 1 cut(s) 930
Eco130I CCWWGG 2 cut(s) 138, 543
Eco147I AGGCCT 1 cut(s) 283
Eco24I GRGCYC 1 cut(s) 11
Eco31I GGTCTC 2 cut(s) 458, 516
Eco47I GGWCC 1 cut(s) 619
Eco88I CYCGRG 1 cut(s) 573
EcoNI CCTNNNNNAGG 2 cut(s) 681, 1003
EcoT14I CCWWGG 2 cut(s) 138, 543
EcoT22I ATGCAT 1 cut(s) 796
EcoT38I GRGCYC 1 cut(s) 11
ErhI CCWWGG 2 cut(s) 138, 543
FaeI CATG 6 cut(s) 135, 785, 794, 875, 932, 1022
FalI AAGNNNNNCTT 4 cut(s) 1053, 1085, 1103, 1135
FaqI GGGAC 1 cut(s) 614
FatI CATG 6 cut(s) 131, 781, 790, 871, 928, 1018
FblI GTMKAC 1 cut(s) 828
Fnu4HI GCNGC 2 cut(s) 702, 1065
FokI GGATG 6 cut(s) 377, 419, 484, 526, 659, 1120
FriOI GRGCYC 1 cut(s) 11
Fsp4HI GCNGC 2 cut(s) 702, 1065
FspBI CTAG 2 cut(s) 515, 822
GluI GCNGC 2 cut(s) 702, 1065
HaeIII GGCC 2 cut(s) 111, 283
HapII CCGG 2 cut(s) 112, 1096
HgaI GACGC 2 cut(s) 233, 551
Hin1I GRCGYC 1 cut(s) 562
Hin1II CATG 6 cut(s) 135, 785, 794, 875, 932, 1022
HincII GTYRAC 1 cut(s) 125
HindII GTYRAC 1 cut(s) 125
HindIII AAGCTT 1 cut(s) 610
HinfI GANTC 1 cut(s) 719
HpaII CCGG 2 cut(s) 112, 1096
HphI GGTGA 2 cut(s) 458, 644
Hpy166II GTNNAC 5 cut(s) 125, 829, 976, 1093, 1191
Hpy188I TCNGA 5 cut(s) 89, 304, 724, 910, 1051
Hpy188III TCNNGA 5 cut(s) 158, 331, 381, 515, 1019
Hpy8I GTNNAC 5 cut(s) 125, 829, 976, 1093, 1191
HpyAV CCTTC 7 cut(s) 328, 355, 443, 452, 512, 636, 1105
HpyCH4III ACNGT 3 cut(s) 129, 532, 769
HpyCH4IV ACGT 1 cut(s) 978
HpyF10VI GCNNNNNNNGC 1 cut(s) 912
HpyF3I CTNAG 1 cut(s) 907
HpySE526I ACGT 1 cut(s) 978
Hsp92I GRCGYC 1 cut(s) 562
Hsp92II CATG 6 cut(s) 135, 785, 794, 875, 932, 1022
Kzo9I GATC 1 cut(s) 1177
Lsp1109I GCAGC 2 cut(s) 688, 1051
LweI GCATC 6 cut(s) 231, 506, 637, 803, 950, 1140
MaeI CTAG 2 cut(s) 515, 822
MaeII ACGT 1 cut(s) 978
MalI GATC 1 cut(s) 1179
MboI GATC 1 cut(s) 1177
MboII GAAGA 8 cut(s) 50, 651, 760, 907, 947, 1021, 1034, 1094
MhlI GDGCHC 2 cut(s) 11, 574
MluCI AATT 6 cut(s) 505, 579, 776, 923, 1036, 1166
MlyI GAGTC 1 cut(s) 728
MmeI TCCRAC 2 cut(s) 506, 1142
MnlI CCTC 8 cut(s) 258, 267, 447, 466, 802, 931, 949, 999
Mph1103I ATGCAT 1 cut(s) 796
MseI TTAA 8 cut(s) 417, 582, 680, 786, 854, 1001, 1034, 1101
MspA1I CMGCKG 1 cut(s) 701
MspI CCGG 2 cut(s) 112, 1096
MspR9I CCNGG 1 cut(s) 1097
MwoI GCNNNNNNNGC 1 cut(s) 912
NciI CCSGG 1 cut(s) 1097
NdeII GATC 1 cut(s) 1177
NlaIII CATG 6 cut(s) 135, 785, 794, 875, 932, 1022
NlaIV GGNNCC 1 cut(s) 86
NsiI ATGCAT 1 cut(s) 796
NspI RCATGY 3 cut(s) 785, 794, 932
PaeR7I CTCGAG 1 cut(s) 573
PagI TCATGA 1 cut(s) 1018
PceI AGGCCT 1 cut(s) 283
PflMI CCANNNNNTGG 1 cut(s) 628
PkrI GCNGC 2 cut(s) 703, 1066
PleI GAGTC 1 cut(s) 727
PpsI GAGTC 1 cut(s) 727
Ppu21I YACGTR 1 cut(s) 979
PspN4I GGNNCC 1 cut(s) 86
PspPI GGNCC 1 cut(s) 619
PspXI VCTCGAGB 1 cut(s) 573
PstI CTGCAG 1 cut(s) 706
PstNI CAGNNNCTG 1 cut(s) 767
PvuII CAGCTG 1 cut(s) 701
RsaI GTAC 3 cut(s) 295, 975, 981
RsaNI GTAC 3 cut(s) 294, 974, 980
SaqAI TTAA 8 cut(s) 417, 582, 680, 786, 854, 1001, 1034, 1101
SatI GCNGC 2 cut(s) 702, 1065
Sau3AI GATC 1 cut(s) 1177
Sau96I GGNCC 1 cut(s) 619
ScaI AGTACT 1 cut(s) 295
SchI GAGTC 1 cut(s) 728
ScrFI CCNGG 1 cut(s) 1097
SduI GDGCHC 2 cut(s) 11, 574
SfaNI GCATC 6 cut(s) 231, 506, 637, 803, 950, 1140
SfcI CTRYAG 1 cut(s) 702
Sfr274I CTCGAG 1 cut(s) 573
SinI GGWCC 1 cut(s) 619
SlaI CTCGAG 1 cut(s) 573
SmlI CTYRAG 1 cut(s) 573
SmoI CTYRAG 1 cut(s) 573
Sse9I AATT 6 cut(s) 505, 579, 776, 923, 1036, 1166
SseBI AGGCCT 1 cut(s) 283
SsiI CCGC 1 cut(s) 522
SspI AATATT 1 cut(s) 146
SspMI CTAG 2 cut(s) 515, 822
StuI AGGCCT 1 cut(s) 283
StyD4I CCNGG 1 cut(s) 1095
StyI CCWWGG 2 cut(s) 138, 543
TaaI ACNGT 3 cut(s) 129, 532, 769
TaiI ACGT 1 cut(s) 981
TaqI TCGA 1 cut(s) 574
TasI AATT 6 cut(s) 505, 579, 776, 923, 1036, 1166
TatI WGTACW 1 cut(s) 293
Tru1I TTAA 8 cut(s) 417, 582, 680, 786, 854, 1001, 1034, 1101
Tru9I TTAA 8 cut(s) 417, 582, 680, 786, 854, 1001, 1034, 1101
TscAI CASTG 2 cut(s) 328, 537
TseI GCWGC 2 cut(s) 701, 1064
TspRI CASTG 2 cut(s) 328, 537
Van91I CCANNNNNTGG 1 cut(s) 628
VpaK11BI GGWCC 1 cut(s) 619
XagI CCTNNNNNAGG 2 cut(s) 681, 1003
XapI RAATTY 2 cut(s) 1036, 1166
XbaI TCTAGA 1 cut(s) 514
XceI RCATGY 3 cut(s) 785, 794, 932
XcmI CCANNNNNNNNNTGG 1 cut(s) 659
XhoI CTCGAG 1 cut(s) 573
XmiI GTMKAC 1 cut(s) 828
XspI CTAG 2 cut(s) 515, 822
ZrmI AGTACT 1 cut(s) 295
Zsp2I ATGCAT 1 cut(s) 796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.