RLG00000001523
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000615
Physical Location & Seq
Reverse (-)
16855081 .. 16977875
122795 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001523

Sequence Viewer

Length: 993 bp
ATGGGTGGACGTTTGATTGATGTTGACCGGGAACTTCCCATTTCTAATGATGCTCGCACTGTGGTCTTAGTTGGACGCACTGGTAATGGAAAAAGTGCAACAGGCAACAGCATTCTTGGCAAAAACGCCTTCAAGGCCAAGCGTAGCTCTAGTAGGGTCACGACCACTACTGAATTGAAGACTGCTATCTTGAGAAATGGACAACAAATTAATGTTATAGACACTCCTGGTCTTTTTGATAATTCTGCCAAATCAGAATTTATTGGCAAAGAAATTGCCAAATGCATTAAATTGGCCGAGGATGGAATCCATGCAGTTCTTGTGGTTCTCTCAACTAGAACTCGCTTTACAAAAGAAGAGGAGTCTGCACTCCGTAGCTTGGAAATTCTATTTGGAAGTAAAATCTTTGACTATATGATTGTTATCTTCACCGGAGGAGATGAGTTGGAAGAAAATGATGAGACTTTGGAAGATTATTTGGGACATGATTGCCCGGAGCCTTTGAAGGAAATCCTTGGTCTCTGTGGAAATCGTTGTGTGCTTTTTGATAACAAGTCTAAGGATGAAAGCAAGAGGGTCGAACAAGTGCAGCGGCTTCTCTCGCTTGTAAACTTGGTTATAGCACAGAATGGTGGGCGGCCATACACGGATGAGATATTTGCTGAAGTGAAGAAATTTCGTGATCAACAAGAAGAGGTTGCTTCGAAGGGGTATTCAAAACAAGAAATATCTCGTTTGAATGAGCAGATACAGCTTGCACATGATCAGCAGCTTAAACAGATTACTGAGATGATTGATTTAAAGATGAAAGAGAAAACCATGATGCTTGAACAAAAGTTAGCAGATGAACGTGCTGCTCGACTAAGAGCAGAAGAGACTACCCAAGAGGCTCAACAAAGGTCTGAGGATGGAATCCGAAAGCTTAGAAACGATCTTGCAAACACGCCTGAGCCTAAGCAGCCAAAATGCACAGAGAAGTGTGCTATTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

331

Amino Acids

37.09

Weight (kDa)

5.73

Isoelectric Point (pI)

45.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIG1 PF04548 19 - 229 1.2e-79 AIG1 family
MMR_HSR1 PF01926 20 - 126 1.5e-11 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000615)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33970 AT1G33970 AT1G33970 AT1G33970 AT1G33970
fragaria_vesca FvH4_5g32530 FvH4_5g32530
malus_domestica MD15G1403700.v1.1
prunus_persica Prupe.1G549700_v2.0.a1 Prupe.1G549700_v2.0.a1
pyrus_communis pycom15g36100
rosa_chinensis RchiOBHm_Chr7g0226331 RchiOBHm_Chr7g0229101 RchiOBHm_Chr7g0229111 RchiOBHm_Chr7g0229141 RchiOBHm_Chr7g0229161 RchiOBHm_Chr7g0229171 RchiOBHm_Chr7g0229211 RchiOBHm_Chr7g0229241 RchiOBHm_Chr7g0229381 RchiOBHm_Chr7g0229761 RchiOBHm_Chr7g0229911
rosa_laevigata RLG00000000796 RLG00000001464 RLG00000001466 RLG00000001469 RLG00000001523 RLG00000001526 RLG00000001529 RLG00000001530 RLG00000001749 RLG00000001913 RLG00000002114 RLG00000002115 RLG00000023248 RLG00000023250
rosa_multiflora Rmu_co8281135.1_g000001 Rmu_sc0000271.1_g000002 Rmu_sc0000271.1_g000007 Rmu_sc0000271.1_g000014 Rmu_sc0000693.1_g000012 Rmu_sc0000693.1_g000015 Rmu_sc0000693.1_g000023 Rmu_sc0001044.1_g000005 Rmu_sc0006689.1_g000007 Rmu_sc0012733.1_g000005
rosa_roxburghii Rroxscaffold_3G00230540 Rroxscaffold_3G00230590 Rroxscaffold_3G00230600 Rroxscaffold_3G00230700 Rroxscaffold_3G00230710 Rroxscaffold_3G00232980 Rroxscaffold_3G00237610
rosa_rugosa Rorug07G0203800 Rorug07G0203900 Rorug07G0256100 Rorug07G0256400 Rorug07G0256400 Rorug07G0256400 Rorug07G0256500 Rorug07G0256600 Rorug07G0256600 Rorug07G0257100 Rorug07G0257200 Rorug07G0257300 Rorug07G0257400
rosa_samantha Rh7DG401100 Rh7DG401300 Rh7DG401900 Rh7DG402100 Rh7DG402300 Rh7DG402700
rosa_wichuraiana Rw0G001910 Rw0G001930 Rw0G001940 Rw7G033790 Rw7G033810 Rw7G033840 Rw7G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 592, 637
AcoI YGGCCR 2 cut(s) 294, 638
AcsI RAATTY 3 cut(s) 257, 384, 674
AcuI CTGAAG 1 cut(s) 684
AfiI CCNNNNNNNGG 1 cut(s) 379
AgsI TTSAA 6 cut(s) 133, 178, 505, 717, 739, 830
AjnI CCWGG 1 cut(s) 226
AjuI GAANNNNNNNTTGG 2 cut(s) 375, 407
AluBI AGCT 5 cut(s) 147, 378, 754, 772, 922
AluI AGCT 5 cut(s) 147, 378, 754, 772, 922
Alw26I GTCTC 3 cut(s) 455, 524, 869
AoxI GGCC 3 cut(s) 135, 294, 638
ApeKI GCWGC 4 cut(s) 589, 769, 854, 958
ApoI RAATTY 3 cut(s) 257, 384, 674
AseI ATTAAT 1 cut(s) 210
AsuC2I CCSGG 2 cut(s) 29, 494
AsuHPI GGTGA 1 cut(s) 421
AsuII TTCGAA 1 cut(s) 704
BbsI GAAGAC 1 cut(s) 185
BbvI GCAGC 4 cut(s) 601, 781, 841, 970
BccI CCATC 2 cut(s) 296, 902
BcgI CGANNNNNNTGC 2 cut(s) 559, 593
BciT130I CCWGG 1 cut(s) 228
BclI TGATCA 2 cut(s) 682, 763
BcnI CCSGG 2 cut(s) 29, 494
BcoDI GTCTC 3 cut(s) 455, 524, 869
BfaI CTAG 2 cut(s) 150, 336
BglI GCCNNNNNGGC 1 cut(s) 134
BisI GCNGC 6 cut(s) 590, 593, 638, 770, 855, 959
BlsI GCNGC 6 cut(s) 591, 594, 639, 771, 856, 960
Bme1390I CCNGG 3 cut(s) 29, 228, 494
BmiI GGNNCC 1 cut(s) 498
BmrFI CCNGG 3 cut(s) 29, 228, 494
BmsI GCATC 2 cut(s) 40, 813
BpiI GAAGAC 1 cut(s) 185
Bpu10I CCTNAGC 2 cut(s) 948, 954
Bpu14I TTCGAA 1 cut(s) 704
BpuEI CTTGAG 1 cut(s) 211
BpuMI CCSGG 2 cut(s) 29, 494
BsaBI GATNNNNATC 1 cut(s) 422
BsaI GGTCTC 1 cut(s) 524
BsaJI CCNNGG 2 cut(s) 297, 514
BsaWI WCCGGW 1 cut(s) 431
Bsc4I CCNNNNNNNGG 1 cut(s) 379
Bse1I ACTGG 1 cut(s) 85
Bse8I GATNNNNATC 1 cut(s) 422
BseBI CCWGG 1 cut(s) 228
BseDI CCNNGG 2 cut(s) 297, 514
BseGI GGATG 4 cut(s) 307, 568, 655, 913
BseJI GATNNNNATC 1 cut(s) 422
BseLI CCNNNNNNNGG 1 cut(s) 379
BseMII CTCAG 3 cut(s) 777, 894, 939
BseNI ACTGG 1 cut(s) 85
BseRI GAGGAG 2 cut(s) 374, 450
BseXI GCAGC 4 cut(s) 601, 781, 841, 970
BsgI GTGCAG 2 cut(s) 351, 608
BshFI GGCC 3 cut(s) 137, 296, 640
BsiSI CCGG 3 cut(s) 28, 432, 494
BslFI GGGAC 1 cut(s) 495
BslI CCNNNNNNNGG 1 cut(s) 379
BsmAI GTCTC 3 cut(s) 455, 524, 869
BsmFI GGGAC 1 cut(s) 495
BsmI GAATGC 1 cut(s) 111
BsnI GGCC 3 cut(s) 137, 296, 640
Bso31I GGTCTC 1 cut(s) 524
Bsp119I TTCGAA 1 cut(s) 704
Bsp143I GATC 3 cut(s) 682, 763, 931
BspACI CCGC 2 cut(s) 592, 637
BspANI GGCC 3 cut(s) 137, 296, 640
BspCNI CTCAG 3 cut(s) 778, 895, 940
BspLI GGNNCC 1 cut(s) 498
BspT104I TTCGAA 1 cut(s) 704
BspTNI GGTCTC 1 cut(s) 524
BsrI ACTGG 1 cut(s) 85
BssECI CCNNGG 2 cut(s) 297, 514
BssMI GATC 3 cut(s) 682, 763, 931
BssT1I CCWWGG 1 cut(s) 514
Bst2UI CCWGG 1 cut(s) 228
Bst4CI ACNGT 1 cut(s) 61
Bst6I CTCTTC 3 cut(s) 351, 687, 867
BstBI TTCGAA 1 cut(s) 704
BstC8I GCNNGC 2 cut(s) 55, 756
BstDEI CTNAG 8 cut(s) 67, 558, 786, 863, 903, 923, 948, 954
BstF5I GGATG 4 cut(s) 307, 568, 655, 913
BstKTI GATC 3 cut(s) 685, 766, 934
BstMAI GTCTC 3 cut(s) 455, 524, 869
BstMBI GATC 3 cut(s) 682, 763, 931
BstMWI GCNNNNNNNGC 5 cut(s) 117, 134, 601, 751, 958
BstNI CCWGG 1 cut(s) 228
BstSCI CCNGG 3 cut(s) 27, 226, 492
BstV1I GCAGC 4 cut(s) 601, 781, 841, 970
BstV2I GAAGAC 1 cut(s) 185
BsuRI GGCC 3 cut(s) 137, 296, 640
BtsCI GGATG 4 cut(s) 307, 568, 655, 913
BtsIMutI CAGTG 2 cut(s) 57, 78
Cac8I GCNNGC 2 cut(s) 55, 756
CseI GACGC 1 cut(s) 84
CviAII CATG 4 cut(s) 311, 485, 761, 820
DdeI CTNAG 8 cut(s) 67, 558, 786, 863, 903, 923, 948, 954
DpnI GATC 3 cut(s) 684, 765, 933
DpnII GATC 3 cut(s) 682, 763, 931
DraI TTTAAA 1 cut(s) 801
EaeI YGGCCR 2 cut(s) 294, 638
Eam1104I CTCTTC 3 cut(s) 351, 687, 867
EarI CTCTTC 3 cut(s) 351, 687, 867
Eco130I CCWWGG 1 cut(s) 514
Eco31I GGTCTC 1 cut(s) 524
Eco57I CTGAAG 1 cut(s) 684
EcoRII CCWGG 1 cut(s) 226
EcoT14I CCWWGG 1 cut(s) 514
EcoT22I ATGCAT 1 cut(s) 287
ErhI CCWWGG 1 cut(s) 514
FaeI CATG 4 cut(s) 314, 488, 764, 823
FaqI GGGAC 1 cut(s) 495
FatI CATG 4 cut(s) 310, 484, 760, 819
FbaI TGATCA 2 cut(s) 682, 763
Fnu4HI GCNGC 6 cut(s) 590, 593, 638, 770, 855, 959
FokI GGATG 4 cut(s) 314, 575, 662, 920
Fsp4HI GCNGC 6 cut(s) 590, 593, 638, 770, 855, 959
FspBI CTAG 2 cut(s) 150, 336
GluI GCNGC 6 cut(s) 590, 593, 638, 770, 855, 959
HaeIII GGCC 3 cut(s) 137, 296, 640
HapII CCGG 3 cut(s) 28, 432, 494
HgaI GACGC 1 cut(s) 84
Hin1II CATG 4 cut(s) 314, 488, 764, 823
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HindIII AAGCTT 1 cut(s) 920
HinfI GANTC 3 cut(s) 306, 362, 912
HpaII CCGG 3 cut(s) 28, 432, 494
HphI GGTGA 1 cut(s) 421
Hpy166II GTNNAC 3 cut(s) 8, 25, 610
Hpy188I TCNGA 3 cut(s) 256, 904, 917
Hpy188III TCNNGA 3 cut(s) 160, 190, 680
Hpy8I GTNNAC 3 cut(s) 8, 25, 610
HpyAV CCTTC 3 cut(s) 139, 499, 700
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4IV ACGT 2 cut(s) 10, 850
HpyCH4V TGCA 8 cut(s) 98, 285, 314, 368, 589, 758, 938, 969
HpyF10VI GCNNNNNNNGC 5 cut(s) 117, 134, 601, 751, 958
HpyF3I CTNAG 8 cut(s) 67, 558, 786, 863, 903, 923, 948, 954
HpySE526I ACGT 2 cut(s) 10, 850
Hsp92II CATG 4 cut(s) 314, 488, 764, 823
Ksp22I TGATCA 2 cut(s) 682, 763
Kzo9I GATC 3 cut(s) 682, 763, 931
LmnI GCTCC 1 cut(s) 496
LpnPI CCDG 8 cut(s) 41, 66, 87, 213, 240, 445, 507, 960
Lsp1109I GCAGC 4 cut(s) 601, 781, 841, 970
LweI GCATC 2 cut(s) 40, 813
MaeI CTAG 2 cut(s) 150, 336
MaeII ACGT 2 cut(s) 10, 850
MaeIII GTNAC 1 cut(s) 157
MalI GATC 3 cut(s) 684, 765, 933
MboI GATC 3 cut(s) 682, 763, 931
MboII GAAGA 8 cut(s) 190, 368, 418, 461, 482, 682, 704, 884
MluCI AATT 8 cut(s) 173, 207, 241, 257, 273, 290, 384, 674
MlyI GAGTC 1 cut(s) 371
MmeI TCCRAC 2 cut(s) 52, 426
MnlI CCTC 7 cut(s) 292, 352, 428, 567, 688, 880, 898
Mph1103I ATGCAT 1 cut(s) 287
MseI TTAA 4 cut(s) 210, 288, 774, 800
MspA1I CMGCKG 1 cut(s) 592
MspI CCGG 3 cut(s) 28, 432, 494
MspR9I CCNGG 3 cut(s) 29, 228, 494
Mva1269I GAATGC 1 cut(s) 111
MvaI CCWGG 1 cut(s) 228
MwoI GCNNNNNNNGC 5 cut(s) 117, 134, 601, 751, 958
NciI CCSGG 2 cut(s) 29, 494
NdeII GATC 3 cut(s) 682, 763, 931
NlaIII CATG 4 cut(s) 314, 488, 764, 823
NlaIV GGNNCC 1 cut(s) 498
NmeAIII GCCGAG 1 cut(s) 322
NmuCI GTSAC 1 cut(s) 157
NsiI ATGCAT 1 cut(s) 287
NspV TTCGAA 1 cut(s) 704
PcsI WCGNNNNNNNCGW 1 cut(s) 856
PctI GAATGC 1 cut(s) 111
PfeI GAWTC 2 cut(s) 306, 912
PkrI GCNGC 6 cut(s) 591, 594, 639, 771, 856, 960
PleI GAGTC 1 cut(s) 370
PpsI GAGTC 1 cut(s) 370
PshBI ATTAAT 1 cut(s) 210
Psp6I CCWGG 1 cut(s) 226
PspGI CCWGG 1 cut(s) 226
PspN4I GGNNCC 1 cut(s) 498
PsrI GAACNNNNNNTAC 2 cut(s) 331, 363
SaqAI TTAA 4 cut(s) 210, 288, 774, 800
SatI GCNGC 6 cut(s) 590, 593, 638, 770, 855, 959
Sau3AI GATC 3 cut(s) 682, 763, 931
SchI GAGTC 1 cut(s) 371
ScrFI CCNGG 3 cut(s) 29, 228, 494
SetI ASST 9 cut(s) 13, 149, 380, 699, 756, 774, 853, 902, 924
SfaNI GCATC 2 cut(s) 40, 813
SfuI TTCGAA 1 cut(s) 704
SmlI CTYRAG 1 cut(s) 190
SmoI CTYRAG 1 cut(s) 190
Sse9I AATT 8 cut(s) 173, 207, 241, 257, 273, 290, 384, 674
SsiI CCGC 2 cut(s) 592, 637
SspMI CTAG 2 cut(s) 150, 336
StyD4I CCNGG 3 cut(s) 27, 226, 492
StyI CCWWGG 1 cut(s) 514
TaaI ACNGT 1 cut(s) 61
TaiI ACGT 2 cut(s) 13, 853
TaqI TCGA 3 cut(s) 579, 704, 859
TasI AATT 8 cut(s) 173, 207, 241, 257, 273, 290, 384, 674
TauI GCSGC 2 cut(s) 595, 640
TfiI GAWTC 2 cut(s) 306, 912
Tru1I TTAA 4 cut(s) 210, 288, 774, 800
Tru9I TTAA 4 cut(s) 210, 288, 774, 800
TscAI CASTG 2 cut(s) 64, 85
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 4 cut(s) 589, 769, 854, 958
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 3 cut(s) 579, 821, 861
TspGWI ACGGA 2 cut(s) 362, 662
TspRI CASTG 2 cut(s) 64, 85
VspI ATTAAT 1 cut(s) 210
XapI RAATTY 3 cut(s) 257, 384, 674
XspI CTAG 2 cut(s) 150, 336
Zsp2I ATGCAT 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.