RLG00000002114
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000615
Physical Location & Seq
Forward (+)
25662246 .. 25665209
2964 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002114

Sequence Viewer

Length: 1059 bp
ATGGCTTACATGTTTAAAAATCAGTGTGTATTCAGATTCTGTATAATGGATGGACCTTCGATTGATGTTGACCGGCAACTTCCCTTTTCTAATGCTGCTCGCACTATGGTCTTAGTTGGACGCACTGGTAATGGAAAAAGTGCAACAGGCAACAGCATTCTTGGCAGAAAAGCCTTCACATCCAAGCGTAGCTCTAGTGGTGTCACGACCGCTACTGAATTGCAGACTGCTATCTTGGGAGATGGACAACAAATTAATGTTATAGACACTCCTGGTCTTTTTGATAATTCTGCCAAATCAGACTTTATTGGCAAAGAAATTGCCAAATGCATTAAATTGGCTGAGGATGGGATCCATGCTGTTCTTGTGGTTCTCTCAACTAGAACTCGCTTTACAAAAGAAGAGGAGTCTGCACTCCGTAGCTTGGAAGCTCTATTTGGAAGTAAAATCTTTGACTATATGATTGTTGTCTTTACTGGAGGAGATGAGTTGGAAGAAAATGATGAAACTTTGGAAGATTATTTGGGTCGTGATTGCCCGAAGCCTTTGAAGGGAATCCTTGGTCTGTGTGGAAATCGCTGTGTGCTTTTTGATAACAAGACTACGGATAAAAACAAGAGGGTCGAACAAGTGCAGCGGCTTCTCTCGCTTGTAAACTCGGTTATAGCACAGAATGGTGGGCGGCCATACACAGATGAGATATTTGCTGAAGCGAAGAAAGGGTCTATGAAACTTCGTGATCAACAAGAAGAGGTTGCTTCGAAGGGGTATTCAAAACGAGAAATAAATCTTTTGAATGAGCAGATACAGCGTCAATATGATATGCAGCTTAAACAAATTACTGAGATGCTTGAGTTAAAGATGAGAGTGAATACCATGAAGCTTGAACAAAGGTTAGCAGATGGACATGCTGCGCGACTAAAAGAAGAACTGCAGATTGCCCGAGAGGCTCAACGAAGGTCTGAGAATGAGATCCAACAGCTTAGATACGATCTACAACACAATGGAAACTACGGAGGTCGCCACATAGGCCTCGGAGACATTTGTCCTTTTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

353

Amino Acids

39.52

Weight (kDa)

7.55

Isoelectric Point (pI)

43.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIG1 PF04548 35 - 248 5.7e-81 AIG1 family
MMR_HSR1 PF01926 36 - 142 2.5e-10 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000615)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33970 AT1G33970 AT1G33970 AT1G33970 AT1G33970
fragaria_vesca FvH4_5g32530 FvH4_5g32530
malus_domestica MD15G1403700.v1.1
prunus_persica Prupe.1G549700_v2.0.a1 Prupe.1G549700_v2.0.a1
pyrus_communis pycom15g36100
rosa_chinensis RchiOBHm_Chr7g0226331 RchiOBHm_Chr7g0229101 RchiOBHm_Chr7g0229111 RchiOBHm_Chr7g0229141 RchiOBHm_Chr7g0229161 RchiOBHm_Chr7g0229171 RchiOBHm_Chr7g0229211 RchiOBHm_Chr7g0229241 RchiOBHm_Chr7g0229381 RchiOBHm_Chr7g0229761 RchiOBHm_Chr7g0229911
rosa_laevigata RLG00000000796 RLG00000001464 RLG00000001466 RLG00000001469 RLG00000001523 RLG00000001526 RLG00000001529 RLG00000001530 RLG00000001749 RLG00000001913 RLG00000002114 RLG00000002115 RLG00000023248 RLG00000023250
rosa_multiflora Rmu_co8281135.1_g000001 Rmu_sc0000271.1_g000002 Rmu_sc0000271.1_g000007 Rmu_sc0000271.1_g000014 Rmu_sc0000693.1_g000012 Rmu_sc0000693.1_g000015 Rmu_sc0000693.1_g000023 Rmu_sc0001044.1_g000005 Rmu_sc0006689.1_g000007 Rmu_sc0012733.1_g000005
rosa_roxburghii Rroxscaffold_3G00230540 Rroxscaffold_3G00230590 Rroxscaffold_3G00230600 Rroxscaffold_3G00230700 Rroxscaffold_3G00230710 Rroxscaffold_3G00232980 Rroxscaffold_3G00237610
rosa_rugosa Rorug07G0203800 Rorug07G0203900 Rorug07G0256100 Rorug07G0256400 Rorug07G0256400 Rorug07G0256400 Rorug07G0256500 Rorug07G0256600 Rorug07G0256600 Rorug07G0257100 Rorug07G0257200 Rorug07G0257300 Rorug07G0257400
rosa_samantha Rh7DG401100 Rh7DG401300 Rh7DG401900 Rh7DG402100 Rh7DG402300 Rh7DG402700
rosa_wichuraiana Rw0G001910 Rw0G001930 Rw0G001940 Rw7G033790 Rw7G033810 Rw7G033840 Rw7G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 916
AciI CCGC 3 cut(s) 210, 637, 682
AclWI GGATC 3 cut(s) 346, 359, 967
AcoI YGGCCR 1 cut(s) 683
AcuI CTGAAG 1 cut(s) 729
AfiI CCNNNNNNNGG 2 cut(s) 424, 551
AflIII ACRYGT 1 cut(s) 9
AgsI TTSAA 4 cut(s) 550, 774, 796, 887
AjnI CCWGG 1 cut(s) 271
AjuI GAANNNNNNNTTGG 2 cut(s) 420, 452
AluBI AGCT 6 cut(s) 192, 423, 431, 829, 883, 982
AluI AGCT 6 cut(s) 192, 423, 431, 829, 883, 982
Alw26I GTCTC 1 cut(s) 1032
AlwI GGATC 3 cut(s) 346, 359, 967
AlwNI CAGNNNCTG 1 cut(s) 39
Ama87I CYCGRG 1 cut(s) 942
AoxI GGCC 2 cut(s) 683, 1030
ApeKI GCWGC 4 cut(s) 95, 634, 826, 911
ArsI GACNNNNNNTTYG 2 cut(s) 707, 739
AseI ATTAAT 1 cut(s) 255
AspLEI GCGC 1 cut(s) 916
AspS9I GGNCC 1 cut(s) 53
AsuII TTCGAA 1 cut(s) 761
AvaI CYCGRG 1 cut(s) 942
AvaII GGWCC 1 cut(s) 53
BamHI GGATCC 1 cut(s) 351
BbvCI CCTCAGC 1 cut(s) 342
BbvI GCAGC 4 cut(s) 82, 646, 838, 898
BccI CCATC 4 cut(s) 44, 236, 341, 896
BciT130I CCWGG 1 cut(s) 273
BclI TGATCA 1 cut(s) 739
BcoDI GTCTC 1 cut(s) 1032
BfaI CTAG 2 cut(s) 195, 381
BfmI CTRYAG 1 cut(s) 932
BglI GCCNNNNNGGC 2 cut(s) 947, 1029
BisI GCNGC 6 cut(s) 96, 635, 638, 683, 827, 912
BlsI GCNGC 6 cut(s) 97, 636, 639, 684, 828, 913
Bme1390I CCNGG 1 cut(s) 273
Bme18I GGWCC 1 cut(s) 53
BmeT110I CYCGRG 1 cut(s) 942
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 1 cut(s) 353
BmrFI CCNGG 1 cut(s) 273
BmsI GCATC 1 cut(s) 837
BoxI GACNNNNGTC 1 cut(s) 1044
BpmI CTGGAG 1 cut(s) 498
Bpu10I CCTNAGC 1 cut(s) 342
Bpu14I TTCGAA 1 cut(s) 761
BpuEI CTTGAG 1 cut(s) 872
BsaJI CCNNGG 2 cut(s) 559, 1033
Bsc4I CCNNNNNNNGG 2 cut(s) 424, 551
Bse118I RCCGGY 1 cut(s) 72
Bse1I ACTGG 2 cut(s) 130, 481
BseBI CCWGG 1 cut(s) 273
BseDI CCNNGG 2 cut(s) 559, 1033
BseGI GGATG 3 cut(s) 55, 179, 352
BseLI CCNNNNNNNGG 2 cut(s) 424, 551
BseMII CTCAG 3 cut(s) 333, 834, 954
BseNI ACTGG 2 cut(s) 130, 481
BseRI GAGGAG 2 cut(s) 419, 495
BseXI GCAGC 4 cut(s) 82, 646, 838, 898
BsgI GTGCAG 2 cut(s) 396, 653
Bsh1236I CGCG 1 cut(s) 916
Bsh1285I CGRYCG 1 cut(s) 210
BshFI GGCC 2 cut(s) 685, 1032
BsiEI CGRYCG 1 cut(s) 210
BsiHKCI CYCGRG 1 cut(s) 942
BsiSI CCGG 1 cut(s) 73
BslI CCNNNNNNNGG 2 cut(s) 424, 551
BsmAI GTCTC 1 cut(s) 1032
BsmI GAATGC 1 cut(s) 156
BsnI GGCC 2 cut(s) 685, 1032
BsoBI CYCGRG 1 cut(s) 942
Bsp119I TTCGAA 1 cut(s) 761
Bsp143I GATC 4 cut(s) 351, 739, 972, 991
BspACI CCGC 3 cut(s) 210, 637, 682
BspANI GGCC 2 cut(s) 685, 1032
BspCNI CTCAG 3 cut(s) 334, 835, 955
BspFNI CGCG 1 cut(s) 916
BspLI GGNNCC 1 cut(s) 353
BspMAI CTGCAG 1 cut(s) 936
BspPI GGATC 3 cut(s) 346, 359, 967
BspT104I TTCGAA 1 cut(s) 761
BsrFI RCCGGY 1 cut(s) 72
BsrI ACTGG 2 cut(s) 130, 481
BssAI RCCGGY 1 cut(s) 72
BssECI CCNNGG 2 cut(s) 559, 1033
BssMI GATC 4 cut(s) 351, 739, 972, 991
BssT1I CCWWGG 1 cut(s) 559
Bst2UI CCWGG 1 cut(s) 273
Bst6I CTCTTC 2 cut(s) 396, 744
BstBI TTCGAA 1 cut(s) 761
BstC8I GCNNGC 1 cut(s) 100
BstDEI CTNAG 5 cut(s) 112, 342, 843, 963, 983
BstF5I GGATG 3 cut(s) 55, 179, 352
BstFNI CGCG 1 cut(s) 916
BstHHI GCGC 1 cut(s) 916
BstKTI GATC 4 cut(s) 354, 742, 975, 994
BstMAI GTCTC 1 cut(s) 1032
BstMBI GATC 4 cut(s) 351, 739, 972, 991
BstMCI CGRYCG 1 cut(s) 210
BstMWI GCNNNNNNNGC 5 cut(s) 162, 646, 808, 947, 1029
BstNI CCWGG 1 cut(s) 273
BstNSI RCATGY 2 cut(s) 13, 911
BstPAI GACNNNNGTC 1 cut(s) 1044
BstSCI CCNGG 1 cut(s) 271
BstSFI CTRYAG 1 cut(s) 932
BstUI CGCG 1 cut(s) 916
BstV1I GCAGC 4 cut(s) 82, 646, 838, 898
BstX2I RGATCY 2 cut(s) 351, 972
BstYI RGATCY 2 cut(s) 351, 972
BsuRI GGCC 2 cut(s) 685, 1032
BtsCI GGATG 3 cut(s) 55, 179, 352
BtsIMutI CAGTG 2 cut(s) 29, 123
Cac8I GCNNGC 1 cut(s) 100
CaiI CAGNNNCTG 1 cut(s) 39
CfoI GCGC 1 cut(s) 916
Cfr10I RCCGGY 1 cut(s) 72
Cfr13I GGNCC 1 cut(s) 53
CseI GACGC 2 cut(s) 129, 800
CviAII CATG 4 cut(s) 10, 356, 877, 908
DdeI CTNAG 5 cut(s) 112, 342, 843, 963, 983
DpnI GATC 4 cut(s) 353, 741, 974, 993
DpnII GATC 4 cut(s) 351, 739, 972, 991
DraI TTTAAA 1 cut(s) 16
EaeI YGGCCR 1 cut(s) 683
Eam1104I CTCTTC 2 cut(s) 396, 744
EarI CTCTTC 2 cut(s) 396, 744
Eco130I CCWWGG 1 cut(s) 559
Eco147I AGGCCT 1 cut(s) 1032
Eco47I GGWCC 1 cut(s) 53
Eco57I CTGAAG 1 cut(s) 729
Eco88I CYCGRG 1 cut(s) 942
EcoRII CCWGG 1 cut(s) 271
EcoT14I CCWWGG 1 cut(s) 559
EcoT22I ATGCAT 1 cut(s) 332
ErhI CCWWGG 1 cut(s) 559
FaeI CATG 4 cut(s) 13, 359, 880, 911
FatI CATG 4 cut(s) 9, 355, 876, 907
FbaI TGATCA 1 cut(s) 739
Fnu4HI GCNGC 6 cut(s) 96, 635, 638, 683, 827, 912
FokI GGATG 3 cut(s) 62, 166, 359
Fsp4HI GCNGC 6 cut(s) 96, 635, 638, 683, 827, 912
FspBI CTAG 2 cut(s) 195, 381
GlaI GCGC 1 cut(s) 915
GluI GCNGC 6 cut(s) 96, 635, 638, 683, 827, 912
GsuI CTGGAG 1 cut(s) 498
HaeIII GGCC 2 cut(s) 685, 1032
HapII CCGG 1 cut(s) 73
HgaI GACGC 2 cut(s) 129, 800
HhaI GCGC 1 cut(s) 916
Hin1II CATG 4 cut(s) 13, 359, 880, 911
Hin6I GCGC 1 cut(s) 914
HinP1I GCGC 1 cut(s) 914
HincII GTYRAC 1 cut(s) 70
HindII GTYRAC 1 cut(s) 70
HindIII AAGCTT 1 cut(s) 881
HinfI GANTC 3 cut(s) 36, 407, 555
HpaII CCGG 1 cut(s) 73
Hpy166II GTNNAC 2 cut(s) 70, 655
Hpy188I TCNGA 4 cut(s) 35, 301, 964, 1037
Hpy188III TCNNGA 3 cut(s) 205, 530, 737
Hpy8I GTNNAC 2 cut(s) 70, 655
HpyAV CCTTC 5 cut(s) 66, 184, 544, 757, 951
HpyCH4V TGCA 7 cut(s) 143, 223, 330, 413, 634, 826, 934
HpyF10VI GCNNNNNNNGC 5 cut(s) 162, 646, 808, 947, 1029
HpyF3I CTNAG 5 cut(s) 112, 342, 843, 963, 983
Hsp92II CATG 4 cut(s) 13, 359, 880, 911
HspAI GCGC 1 cut(s) 914
Ksp22I TGATCA 1 cut(s) 739
Kzo9I GATC 4 cut(s) 351, 739, 972, 991
LpnPI CCDG 6 cut(s) 86, 111, 132, 258, 285, 462
Lsp1109I GCAGC 4 cut(s) 82, 646, 838, 898
LweI GCATC 1 cut(s) 837
MaeI CTAG 2 cut(s) 195, 381
MaeIII GTNAC 1 cut(s) 202
MalI GATC 4 cut(s) 353, 741, 974, 993
MboI GATC 4 cut(s) 351, 739, 972, 991
MboII GAAGA 6 cut(s) 413, 506, 527, 727, 761, 938
MflI RGATCY 2 cut(s) 351, 972
MluCI AATT 6 cut(s) 218, 252, 286, 318, 335, 837
MlyI GAGTC 1 cut(s) 416
MmeI TCCRAC 3 cut(s) 97, 471, 1000
MnlI CCTC 8 cut(s) 337, 397, 473, 612, 745, 940, 1010, 1043
Mph1103I ATGCAT 1 cut(s) 332
MseI TTAA 5 cut(s) 15, 255, 333, 831, 857
MspA1I CMGCKG 1 cut(s) 637
MspI CCGG 1 cut(s) 73
MspR9I CCNGG 1 cut(s) 273
Mva1269I GAATGC 1 cut(s) 156
MvaI CCWGG 1 cut(s) 273
MvnI CGCG 1 cut(s) 916
MwoI GCNNNNNNNGC 5 cut(s) 162, 646, 808, 947, 1029
NdeII GATC 4 cut(s) 351, 739, 972, 991
NlaIII CATG 4 cut(s) 13, 359, 880, 911
NlaIV GGNNCC 1 cut(s) 353
NmuCI GTSAC 1 cut(s) 202
NsiI ATGCAT 1 cut(s) 332
NspI RCATGY 2 cut(s) 13, 911
NspV TTCGAA 1 cut(s) 761
PceI AGGCCT 1 cut(s) 1032
PciI ACATGT 1 cut(s) 9
PctI GAATGC 1 cut(s) 156
PfeI GAWTC 2 cut(s) 36, 555
PkrI GCNGC 6 cut(s) 97, 636, 639, 684, 828, 913
PleI GAGTC 1 cut(s) 415
PpsI GAGTC 1 cut(s) 415
PscI ACATGT 1 cut(s) 9
PshAI GACNNNNGTC 1 cut(s) 1044
PshBI ATTAAT 1 cut(s) 255
Psp6I CCWGG 1 cut(s) 271
PspGI CCWGG 1 cut(s) 271
PspN4I GGNNCC 1 cut(s) 353
PspPI GGNCC 1 cut(s) 53
PsrI GAACNNNNNNTAC 2 cut(s) 376, 408
PstI CTGCAG 1 cut(s) 936
PstNI CAGNNNCTG 1 cut(s) 39
PsuI RGATCY 2 cut(s) 351, 972
SaqAI TTAA 5 cut(s) 15, 255, 333, 831, 857
SatI GCNGC 6 cut(s) 96, 635, 638, 683, 827, 912
Sau3AI GATC 4 cut(s) 351, 739, 972, 991
Sau96I GGNCC 1 cut(s) 53
SchI GAGTC 1 cut(s) 416
ScrFI CCNGG 1 cut(s) 273
SfaNI GCATC 1 cut(s) 837
SfcI CTRYAG 1 cut(s) 932
SfuI TTCGAA 1 cut(s) 761
SinI GGWCC 1 cut(s) 53
SmlI CTYRAG 1 cut(s) 851
SmoI CTYRAG 1 cut(s) 851
Sse9I AATT 6 cut(s) 218, 252, 286, 318, 335, 837
SseBI AGGCCT 1 cut(s) 1032
SsiI CCGC 3 cut(s) 210, 637, 682
SspMI CTAG 2 cut(s) 195, 381
StuI AGGCCT 1 cut(s) 1032
StyD4I CCNGG 1 cut(s) 271
StyI CCWWGG 1 cut(s) 559
TaqI TCGA 3 cut(s) 59, 624, 761
TasI AATT 6 cut(s) 218, 252, 286, 318, 335, 837
TauI GCSGC 2 cut(s) 640, 685
TfiI GAWTC 2 cut(s) 36, 555
Tru1I TTAA 5 cut(s) 15, 255, 333, 831, 857
Tru9I TTAA 5 cut(s) 15, 255, 333, 831, 857
TscAI CASTG 2 cut(s) 29, 130
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 4 cut(s) 95, 634, 826, 911
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 3 cut(s) 519, 743, 893
TspGWI ACGGA 3 cut(s) 407, 620, 1029
TspRI CASTG 2 cut(s) 29, 130
VpaK11BI GGWCC 1 cut(s) 53
VspI ATTAAT 1 cut(s) 255
XceI RCATGY 2 cut(s) 13, 911
XspI CTAG 2 cut(s) 195, 381
Zsp2I ATGCAT 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.