Rroxscaffold_3G00230600
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000615
Physical Location & Seq
Reverse (-)
15499605 .. 15503185
3581 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00230600.1

Sequence Viewer

Length: 1032 bp
ATGATGGATGGAAGATCGATTGATGTTGACCAGGAACTTCCCTTTTCTAATGCTGCTCGCACTGTGGTCTTAGTTGGACGCACTGGTAATGGAAAAAGTGCAACAGGCAACAGCATTCTTGGCAAAAAAGCCTTCAATGCCAAGCGTAGCTCTAGTGCTGTGACGACCACTACTGAATTACAGACTGCTATCTTGAGAGATGGACAACAAATTAATGTTATAGACACTCCTGGTCTTTTTGATAATTCTGCCAAATCAGACTTCATTGGCAAAGAAATTGTCCAAAGCATTAAATTGGCCAAGGATGGAATCCATGCTGTTCTTGTGGTTCTCTCAACTAAAACTCGCTTATCTGAAGAAGAGGAGTCTGCAATCCGTAGCTTGGAAACTCTATTTGGAAGTAAAATCTTTGACTATATGATTGTTGTCTTTACGGGAGGAGATGAGTTGGAAGAAAATGATCTGACTTTGGAAGATTATTTGGGCCGTGATTGCCCAGAGCCTTTGAAGGAAATCCTTAGTCTGTGTGGAAATCGTTGTGTGCTTTTTGATAACAAGACTAAGGATGAAAGCAAGAGGGTTGAACAAGTGCAGCAGCTTCTCTCGCTTGTAAACTCGGTTATAGCACAGAATGGTAGGCGGCCATACACGGATGAGATATTTGCTGAAGTTAAGAAAGGGGCTATGGAACTTAGTGATCAACAAGAAGGGGTTGCTTCATTGAAGGGGTATTCAAAACAAGAAATATCTTATTTGAATGAGCAGATACATCTTGCACATGATCAGCAGCTTAAACAAATTACTGAGATGCTTGAGTTAAAGATGAGAGTGAATGCTATGACGCTTGAACAAAAGTTAGCAGATGAACATGCTGCACGACTAAGAGCAGAACTGCAGATCGCCCAAGAGGCTCAACAAAGGTCTGAGAATGAGATCCGAGGGCTTAGATATGATCCACATGCAGAGAAGCGGATACGCGATGGAAACTGCAGAGGCCGCATAGGCCTCAGAGACATATGTGTTATTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

343

Amino Acids

38.29

Weight (kDa)

5.4

Isoelectric Point (pI)

44.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIG1 PF04548 20 - 234 2.2e-79 AIG1 family
MMR_HSR1 PF01926 21 - 128 1.4e-11 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000615)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33970 AT1G33970 AT1G33970 AT1G33970 AT1G33970
fragaria_vesca FvH4_5g32530 FvH4_5g32530
malus_domestica MD15G1403700.v1.1
prunus_persica Prupe.1G549700_v2.0.a1 Prupe.1G549700_v2.0.a1
pyrus_communis pycom15g36100
rosa_chinensis RchiOBHm_Chr7g0226331 RchiOBHm_Chr7g0229101 RchiOBHm_Chr7g0229111 RchiOBHm_Chr7g0229141 RchiOBHm_Chr7g0229161 RchiOBHm_Chr7g0229171 RchiOBHm_Chr7g0229211 RchiOBHm_Chr7g0229241 RchiOBHm_Chr7g0229381 RchiOBHm_Chr7g0229761 RchiOBHm_Chr7g0229911
rosa_laevigata RLG00000000796 RLG00000001464 RLG00000001466 RLG00000001469 RLG00000001523 RLG00000001526 RLG00000001529 RLG00000001530 RLG00000001749 RLG00000001913 RLG00000002114 RLG00000002115 RLG00000023248 RLG00000023250
rosa_multiflora Rmu_co8281135.1_g000001 Rmu_sc0000271.1_g000002 Rmu_sc0000271.1_g000007 Rmu_sc0000271.1_g000014 Rmu_sc0000693.1_g000012 Rmu_sc0000693.1_g000015 Rmu_sc0000693.1_g000023 Rmu_sc0001044.1_g000005 Rmu_sc0006689.1_g000007 Rmu_sc0012733.1_g000005
rosa_roxburghii Rroxscaffold_3G00230540 Rroxscaffold_3G00230590 Rroxscaffold_3G00230600 Rroxscaffold_3G00230700 Rroxscaffold_3G00230710 Rroxscaffold_3G00232980 Rroxscaffold_3G00237610
rosa_rugosa Rorug07G0203800 Rorug07G0203900 Rorug07G0256100 Rorug07G0256400 Rorug07G0256400 Rorug07G0256400 Rorug07G0256500 Rorug07G0256600 Rorug07G0256600 Rorug07G0257100 Rorug07G0257200 Rorug07G0257300 Rorug07G0257400
rosa_samantha Rh7DG401100 Rh7DG401300 Rh7DG401900 Rh7DG402100 Rh7DG402300 Rh7DG402700
rosa_wichuraiana Rw0G001910 Rw0G001930 Rw0G001940 Rw7G033790 Rw7G033810 Rw7G033840 Rw7G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 978
AciI CCGC 3 cut(s) 640, 970, 997
AclWI GGATC 2 cut(s) 928, 947
AcoI YGGCCR 2 cut(s) 297, 641
AcuI CTGAAG 2 cut(s) 375, 687
AfiI CCNNNNNNNGG 1 cut(s) 382
AgsI TTSAA 7 cut(s) 136, 508, 584, 724, 735, 757, 848
AjnI CCWGG 2 cut(s) 30, 229
AjuI GAANNNNNNNTTGG 4 cut(s) 245, 277, 378, 410
AluBI AGCT 4 cut(s) 150, 381, 598, 790
AluI AGCT 4 cut(s) 150, 381, 598, 790
Alw26I GTCTC 1 cut(s) 1005
AlwI GGATC 2 cut(s) 928, 947
AoxI GGCC 5 cut(s) 297, 484, 641, 994, 1003
ApeKI GCWGC 5 cut(s) 53, 592, 595, 787, 872
ArsI GACNNNNNNTTYG 2 cut(s) 264, 296
AseI ATTAAT 1 cut(s) 213
AspS9I GGNCC 1 cut(s) 484
BalI TGGCCA 1 cut(s) 299
BbvI GCAGC 5 cut(s) 40, 604, 607, 799, 859
BccI CCATC 4 cut(s) 2, 194, 299, 974
BceAI ACGGC 1 cut(s) 471
BciT130I CCWGG 2 cut(s) 32, 231
BciVI GTATCC 1 cut(s) 966
BclI TGATCA 2 cut(s) 697, 781
BcoDI GTCTC 1 cut(s) 1005
BfaI CTAG 1 cut(s) 153
BfmI CTRYAG 2 cut(s) 893, 988
BfuI GTATCC 1 cut(s) 966
BglI GCCNNNNNGGC 2 cut(s) 908, 1002
BisI GCNGC 7 cut(s) 54, 593, 596, 641, 788, 873, 997
BlsI GCNGC 7 cut(s) 55, 594, 597, 642, 789, 874, 998
Bme1390I CCNGG 2 cut(s) 32, 231
BmgT120I GGNCC 1 cut(s) 484
BmrFI CCNGG 2 cut(s) 32, 231
BmsI GCATC 1 cut(s) 798
BpuEI CTTGAG 2 cut(s) 214, 833
Bsa29I ATCGAT 1 cut(s) 17
BsaJI CCNNGG 2 cut(s) 300, 937
Bsc4I CCNNNNNNNGG 1 cut(s) 382
Bse1I ACTGG 1 cut(s) 88
BseBI CCWGG 2 cut(s) 32, 231
BseCI ATCGAT 1 cut(s) 17
BseDI CCNNGG 2 cut(s) 300, 937
BseGI GGATG 4 cut(s) 13, 310, 571, 658
BseLI CCNNNNNNNGG 1 cut(s) 382
BseMII CTCAG 3 cut(s) 795, 915, 1021
BseNI ACTGG 1 cut(s) 88
BseRI GAGGAG 2 cut(s) 377, 453
BseXI GCAGC 5 cut(s) 40, 604, 607, 799, 859
BsgI GTGCAG 2 cut(s) 611, 858
Bsh1236I CGCG 1 cut(s) 978
BshFI GGCC 5 cut(s) 299, 486, 643, 996, 1005
BshVI ATCGAT 1 cut(s) 17
BslI CCNNNNNNNGG 1 cut(s) 382
BsmAI GTCTC 1 cut(s) 1005
BsmI GAATGC 2 cut(s) 114, 838
BsnI GGCC 5 cut(s) 299, 486, 643, 996, 1005
Bsp143I GATC 7 cut(s) 14, 460, 697, 781, 897, 933, 952
BspACI CCGC 3 cut(s) 640, 970, 997
BspANI GGCC 5 cut(s) 299, 486, 643, 996, 1005
BspCNI CTCAG 3 cut(s) 796, 916, 1020
BspDI ATCGAT 1 cut(s) 17
BspFNI CGCG 1 cut(s) 978
BspMAI CTGCAG 2 cut(s) 897, 992
BspPI GGATC 2 cut(s) 928, 947
BsrI ACTGG 1 cut(s) 88
BssECI CCNNGG 2 cut(s) 300, 937
BssMI GATC 7 cut(s) 14, 460, 697, 781, 897, 933, 952
BssT1I CCWWGG 1 cut(s) 300
Bst2UI CCWGG 2 cut(s) 32, 231
Bst4CI ACNGT 1 cut(s) 64
Bst6I CTCTTC 1 cut(s) 354
BstC8I GCNNGC 1 cut(s) 58
BstDEI CTNAG 9 cut(s) 70, 518, 561, 692, 804, 881, 924, 944, 1007
BstF5I GGATG 4 cut(s) 13, 310, 571, 658
BstFNI CGCG 1 cut(s) 978
BstKTI GATC 7 cut(s) 17, 463, 700, 784, 900, 936, 955
BstMAI GTCTC 1 cut(s) 1005
BstMBI GATC 7 cut(s) 14, 460, 697, 781, 897, 933, 952
BstMWI GCNNNNNNNGC 7 cut(s) 120, 137, 492, 604, 908, 996, 1002
BstNI CCWGG 2 cut(s) 32, 231
BstNSI RCATGY 2 cut(s) 872, 962
BstSCI CCNGG 2 cut(s) 30, 229
BstSFI CTRYAG 2 cut(s) 893, 988
BstUI CGCG 1 cut(s) 978
BstV1I GCAGC 5 cut(s) 40, 604, 607, 799, 859
BstX2I RGATCY 1 cut(s) 933
BstYI RGATCY 1 cut(s) 933
Bsu15I ATCGAT 1 cut(s) 17
BsuI GTATCC 1 cut(s) 966
BsuRI GGCC 5 cut(s) 299, 486, 643, 996, 1005
BsuTUI ATCGAT 1 cut(s) 17
BtgZI GCGATG 1 cut(s) 993
BtsCI GGATG 4 cut(s) 13, 310, 571, 658
BtsIMutI CAGTG 2 cut(s) 60, 81
Cac8I GCNNGC 1 cut(s) 58
Cfr13I GGNCC 1 cut(s) 484
ClaI ATCGAT 1 cut(s) 17
CseI GACGC 2 cut(s) 87, 850
CviAII CATG 4 cut(s) 314, 779, 869, 959
DdeI CTNAG 9 cut(s) 70, 518, 561, 692, 804, 881, 924, 944, 1007
DpnI GATC 7 cut(s) 16, 462, 699, 783, 899, 935, 954
DpnII GATC 7 cut(s) 14, 460, 697, 781, 897, 933, 952
EaeI YGGCCR 2 cut(s) 297, 641
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
Eco130I CCWWGG 1 cut(s) 300
Eco147I AGGCCT 1 cut(s) 1005
Eco57I CTGAAG 2 cut(s) 375, 687
EcoRII CCWGG 2 cut(s) 30, 229
EcoT14I CCWWGG 1 cut(s) 300
ErhI CCWWGG 1 cut(s) 300
FaeI CATG 4 cut(s) 317, 782, 872, 962
FatI CATG 4 cut(s) 313, 778, 868, 958
FauNDI CATATG 1 cut(s) 1016
FbaI TGATCA 2 cut(s) 697, 781
Fnu4HI GCNGC 7 cut(s) 54, 593, 596, 641, 788, 873, 997
FokI GGATG 4 cut(s) 20, 317, 578, 665
Fsp4HI GCNGC 7 cut(s) 54, 593, 596, 641, 788, 873, 997
FspBI CTAG 1 cut(s) 153
GluI GCNGC 7 cut(s) 54, 593, 596, 641, 788, 873, 997
HaeIII GGCC 5 cut(s) 299, 486, 643, 996, 1005
HgaI GACGC 2 cut(s) 87, 850
Hin1II CATG 4 cut(s) 317, 782, 872, 962
HincII GTYRAC 1 cut(s) 28
HindII GTYRAC 1 cut(s) 28
HinfI GANTC 2 cut(s) 309, 365
Hpy166II GTNNAC 2 cut(s) 28, 613
Hpy188I TCNGA 6 cut(s) 259, 355, 465, 925, 938, 1010
Hpy188III TCNNGA 1 cut(s) 193
Hpy8I GTNNAC 2 cut(s) 28, 613
HpyAV CCTTC 4 cut(s) 142, 502, 701, 718
HpyCH4III ACNGT 1 cut(s) 64
HpyCH4V TGCA 8 cut(s) 101, 371, 592, 776, 875, 895, 962, 990
HpyF10VI GCNNNNNNNGC 7 cut(s) 120, 137, 492, 604, 908, 996, 1002
HpyF3I CTNAG 9 cut(s) 70, 518, 561, 692, 804, 881, 924, 944, 1007
Hsp92II CATG 4 cut(s) 317, 782, 872, 962
Ksp22I TGATCA 2 cut(s) 697, 781
Kzo9I GATC 7 cut(s) 14, 460, 697, 781, 897, 933, 952
LpnPI CCDG 7 cut(s) 17, 44, 69, 90, 216, 243, 510
Lsp1109I GCAGC 5 cut(s) 40, 604, 607, 799, 859
LweI GCATC 1 cut(s) 798
MaeI CTAG 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 160
MalI GATC 7 cut(s) 16, 462, 699, 783, 899, 935, 954
MboI GATC 7 cut(s) 14, 460, 697, 781, 897, 933, 952
MboII GAAGA 5 cut(s) 24, 368, 371, 464, 485
MflI RGATCY 1 cut(s) 933
MlsI TGGCCA 1 cut(s) 299
MluCI AATT 6 cut(s) 176, 210, 244, 276, 293, 798
MluNI TGGCCA 1 cut(s) 299
MlyI GAGTC 1 cut(s) 374
MmeI TCCRAC 2 cut(s) 55, 429
MnlI CCTC 7 cut(s) 355, 431, 570, 901, 932, 986, 1016
Mox20I TGGCCA 1 cut(s) 299
MscI TGGCCA 1 cut(s) 299
MseI TTAA 6 cut(s) 213, 291, 672, 792, 818, 1030
Msp20I TGGCCA 1 cut(s) 299
MspR9I CCNGG 2 cut(s) 32, 231
Mva1269I GAATGC 2 cut(s) 114, 838
MvaI CCWGG 2 cut(s) 32, 231
MvnI CGCG 1 cut(s) 978
MwoI GCNNNNNNNGC 7 cut(s) 120, 137, 492, 604, 908, 996, 1002
NdeI CATATG 1 cut(s) 1016
NdeII GATC 7 cut(s) 14, 460, 697, 781, 897, 933, 952
NlaIII CATG 4 cut(s) 317, 782, 872, 962
NmuCI GTSAC 1 cut(s) 160
NspI RCATGY 2 cut(s) 872, 962
PceI AGGCCT 1 cut(s) 1005
PctI GAATGC 2 cut(s) 114, 838
PfeI GAWTC 1 cut(s) 309
PkrI GCNGC 7 cut(s) 55, 594, 597, 642, 789, 874, 998
PleI GAGTC 1 cut(s) 373
PpsI GAGTC 1 cut(s) 373
PshBI ATTAAT 1 cut(s) 213
Psp6I CCWGG 2 cut(s) 30, 229
PspGI CCWGG 2 cut(s) 30, 229
PspPI GGNCC 1 cut(s) 484
PstI CTGCAG 2 cut(s) 897, 992
PsuI RGATCY 1 cut(s) 933
SaqAI TTAA 6 cut(s) 213, 291, 672, 792, 818, 1030
SatI GCNGC 7 cut(s) 54, 593, 596, 641, 788, 873, 997
Sau3AI GATC 7 cut(s) 14, 460, 697, 781, 897, 933, 952
Sau96I GGNCC 1 cut(s) 484
SchI GAGTC 1 cut(s) 374
ScrFI CCNGG 2 cut(s) 32, 231
SetI ASST 5 cut(s) 152, 383, 600, 792, 923
SfaNI GCATC 1 cut(s) 798
SfcI CTRYAG 2 cut(s) 893, 988
SfiI GGCCNNNNNGGCC 1 cut(s) 1002
SmlI CTYRAG 2 cut(s) 193, 812
SmoI CTYRAG 2 cut(s) 193, 812
Sse9I AATT 6 cut(s) 176, 210, 244, 276, 293, 798
SseBI AGGCCT 1 cut(s) 1005
SsiI CCGC 3 cut(s) 640, 970, 997
SspMI CTAG 1 cut(s) 153
StuI AGGCCT 1 cut(s) 1005
StyD4I CCNGG 2 cut(s) 30, 229
StyI CCWWGG 1 cut(s) 300
TaaI ACNGT 1 cut(s) 64
TaqI TCGA 1 cut(s) 17
TasI AATT 6 cut(s) 176, 210, 244, 276, 293, 798
TauI GCSGC 2 cut(s) 643, 999
TfiI GAWTC 1 cut(s) 309
Tru1I TTAA 6 cut(s) 213, 291, 672, 792, 818, 1030
Tru9I TTAA 6 cut(s) 213, 291, 672, 792, 818, 1030
TscAI CASTG 2 cut(s) 67, 88
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 5 cut(s) 53, 592, 595, 787, 872
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 4 cut(s) 253, 582, 708, 879
TspGWI ACGGA 2 cut(s) 365, 665
TspRI CASTG 2 cut(s) 67, 88
VspI ATTAAT 1 cut(s) 213
XceI RCATGY 2 cut(s) 872, 962
XspI CTAG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.