Rorug07G0256100
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000615
Physical Location & Seq
Reverse (-)
23943105 .. 23943863
759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0256100.1

Sequence Viewer

Length: 759 bp
ATGTTATCCCTAAACGTTCCCAAGATGGTGTTTTTAAGTGAAACAAGATGCACGGCAGAGGAGATGGTAACAATCCGGCGACAACTTGGGTGGAGGCACAGTTTTGGGGTTGACTGTGTCAGGAAAAAACAACACGACAAGGGGGTGAGTAGAGCAGGTGGATTGTGCCTACTCTGGGAGGAGGAGTTGACAATTGATGTTCAATCGTATTCGGCGAGTCACATTGACGTGGTAATTGGGGAGGTTTCGGATCCAAAAAGATGGCGGTTTACTGGTTTCTATGGTCAGCCTAAACCGGAAAATCGTCATTTGTCGTGGGCACTTATGAAGACTCTTAGTTTGCATGGTAACTTGCCGTGGGTAATTGGAGATGACCTAAACGAGATTACTTCAGGATTAGATAAAGAGGGTGGGGTGTTGCGGAATGTCAGACAGATGGAGGGGTTGAGAGATGCCCTAGACTTTGGCCAGCTGGGAGATGTGCATTTCGTTGGGCCAAGGTTCACATGGCAAGGGATCAGAGCTGGTCATGTCATCAAAATTCGACTAGATAGGTGTGTAGCCACACAGAGTTGGAAGAGCTTGTTCCCAGCTTCAAGAGTGGTGCACCTTAATCCGAATGAGTCAGACCATATTCCAATTTTGCTGGAGGTGCGTGAAGATCGAACTAGGAAAAGAAAGCGGAGAAAGAGATTTCGGTTTGAAGAGTTTTGGGTCAGAGAAGAGGAGTGCAGGACAGTGGTTGCGAAGGAATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

252

Amino Acids

29.33

Weight (kDa)

9.3

Isoelectric Point (pI)

50.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000615)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33970 AT1G33970 AT1G33970 AT1G33970 AT1G33970
fragaria_vesca FvH4_5g32530 FvH4_5g32530
malus_domestica MD15G1403700.v1.1
prunus_persica Prupe.1G549700_v2.0.a1 Prupe.1G549700_v2.0.a1
pyrus_communis pycom15g36100
rosa_chinensis RchiOBHm_Chr7g0226331 RchiOBHm_Chr7g0229101 RchiOBHm_Chr7g0229111 RchiOBHm_Chr7g0229141 RchiOBHm_Chr7g0229161 RchiOBHm_Chr7g0229171 RchiOBHm_Chr7g0229211 RchiOBHm_Chr7g0229241 RchiOBHm_Chr7g0229381 RchiOBHm_Chr7g0229761 RchiOBHm_Chr7g0229911
rosa_laevigata RLG00000000796 RLG00000001464 RLG00000001466 RLG00000001469 RLG00000001523 RLG00000001526 RLG00000001529 RLG00000001530 RLG00000001749 RLG00000001913 RLG00000002114 RLG00000002115 RLG00000023248 RLG00000023250
rosa_multiflora Rmu_co8281135.1_g000001 Rmu_sc0000271.1_g000002 Rmu_sc0000271.1_g000007 Rmu_sc0000271.1_g000014 Rmu_sc0000693.1_g000012 Rmu_sc0000693.1_g000015 Rmu_sc0000693.1_g000023 Rmu_sc0001044.1_g000005 Rmu_sc0006689.1_g000007 Rmu_sc0012733.1_g000005
rosa_roxburghii Rroxscaffold_3G00230540 Rroxscaffold_3G00230590 Rroxscaffold_3G00230600 Rroxscaffold_3G00230700 Rroxscaffold_3G00230710 Rroxscaffold_3G00232980 Rroxscaffold_3G00237610
rosa_rugosa Rorug07G0203800 Rorug07G0203900 Rorug07G0256100 Rorug07G0256400 Rorug07G0256400 Rorug07G0256400 Rorug07G0256500 Rorug07G0256600 Rorug07G0256600 Rorug07G0257100 Rorug07G0257200 Rorug07G0257300 Rorug07G0257400
rosa_samantha Rh7DG401100 Rh7DG401300 Rh7DG401900 Rh7DG402100 Rh7DG402300 Rh7DG402700
rosa_wichuraiana Rw0G001910 Rw0G001930 Rw0G001940 Rw7G033790 Rw7G033810 Rw7G033840 Rw7G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 146
Acc36I ACCTGC 1 cut(s) 146
AciI CCGC 3 cut(s) 265, 421, 682
AclI AACGTT 1 cut(s) 15
AclWI GGATC 3 cut(s) 245, 258, 524
AcoI YGGCCR 1 cut(s) 466
AcsI RAATTY 1 cut(s) 540
AcuI CTGAAG 1 cut(s) 375
AfiI CCNNNNNNNGG 1 cut(s) 175
AgsI TTSAA 3 cut(s) 203, 597, 704
AjiI CACGTC 1 cut(s) 229
AluBI AGCT 4 cut(s) 472, 524, 582, 593
AluI AGCT 4 cut(s) 472, 524, 582, 593
Alw21I GWGCWC 1 cut(s) 609
Alw44I GTGCAC 1 cut(s) 605
AlwI GGATC 3 cut(s) 245, 258, 524
AoxI GGCC 2 cut(s) 466, 494
ApaLI GTGCAC 1 cut(s) 605
ApoI RAATTY 1 cut(s) 540
ArsI GACNNNNNNTTYG 2 cut(s) 322, 354
AspS9I GGNCC 1 cut(s) 494
AsuHPI GGTGA 1 cut(s) 157
BaeGI GKGCMC 2 cut(s) 322, 609
BalI TGGCCA 1 cut(s) 468
BamHI GGATCC 1 cut(s) 250
BbsI GAAGAC 1 cut(s) 335
Bbv12I GWGCWC 1 cut(s) 609
BccI CCATC 4 cut(s) 19, 58, 255, 430
BceAI ACGGC 2 cut(s) 69, 340
BfaI CTAG 3 cut(s) 458, 548, 669
BfuAI ACCTGC 1 cut(s) 146
BmgBI CACGTC 1 cut(s) 229
BmgT120I GGNCC 1 cut(s) 494
BmiI GGNNCC 1 cut(s) 252
BmsI GCATC 2 cut(s) 38, 442
BpiI GAAGAC 1 cut(s) 335
BpmI CTGGAG 1 cut(s) 668
BsaJI CCNNGG 2 cut(s) 356, 497
BsaWI WCCGGW 1 cut(s) 295
BsaXI ACNNNNNCTCC 4 cut(s) 85, 115, 170, 200
Bsc4I CCNNNNNNNGG 1 cut(s) 175
Bse1I ACTGG 1 cut(s) 277
BseDI CCNNGG 2 cut(s) 356, 497
BseLI CCNNNNNNNGG 1 cut(s) 175
BseNI ACTGG 1 cut(s) 277
BseRI GAGGAG 4 cut(s) 74, 194, 197, 740
BseSI GKGCMC 2 cut(s) 322, 609
BseYI CCCAGC 2 cut(s) 472, 589
BsgI GTGCAG 1 cut(s) 751
BshFI GGCC 2 cut(s) 468, 496
BsiHKAI GWGCWC 1 cut(s) 609
BsiSI CCGG 2 cut(s) 76, 296
BslI CCNNNNNNNGG 1 cut(s) 175
BsnI GGCC 2 cut(s) 468, 496
Bsp1286I GDGCHC 2 cut(s) 322, 609
Bsp143I GATC 3 cut(s) 250, 516, 661
BspACI CCGC 3 cut(s) 265, 421, 682
BspANI GGCC 2 cut(s) 468, 496
BspLI GGNNCC 1 cut(s) 252
BspMI ACCTGC 1 cut(s) 146
BspPI GGATC 3 cut(s) 245, 258, 524
BspQI GCTCTTC 1 cut(s) 572
BsrI ACTGG 1 cut(s) 277
BssECI CCNNGG 2 cut(s) 356, 497
BssMI GATC 3 cut(s) 250, 516, 661
BssT1I CCWWGG 1 cut(s) 497
Bst4CI ACNGT 3 cut(s) 101, 116, 739
Bst6I CTCTTC 3 cut(s) 572, 699, 717
BstC8I GCNNGC 1 cut(s) 470
BstDEI CTNAG 1 cut(s) 335
BstDSI CCRYGG 1 cut(s) 356
BstKTI GATC 3 cut(s) 253, 519, 664
BstMBI GATC 3 cut(s) 250, 516, 661
BstMWI GCNNNNNNNGC 1 cut(s) 652
BstSLI GKGCMC 2 cut(s) 322, 609
BstV2I GAAGAC 1 cut(s) 335
BstX2I RGATCY 1 cut(s) 250
BstXI CCANNNNNNTGG 1 cut(s) 261
BstYI RGATCY 1 cut(s) 250
BsuRI GGCC 2 cut(s) 468, 496
BtgI CCRYGG 1 cut(s) 356
BtrI CACGTC 1 cut(s) 229
BtsIMutI CAGTG 1 cut(s) 744
BveI ACCTGC 1 cut(s) 146
Cac8I GCNNGC 1 cut(s) 470
Cfr13I GGNCC 1 cut(s) 494
CspCI CAANNNNNGTGG 2 cut(s) 71, 106
CviAII CATG 3 cut(s) 344, 507, 530
CviJI RGCY 8 cut(s) 289, 468, 472, 496, 524, 563, 582, 593
CviKI_1 RGCY 8 cut(s) 289, 468, 472, 496, 524, 563, 582, 593
DdeI CTNAG 1 cut(s) 335
DpnI GATC 3 cut(s) 252, 518, 663
DpnII GATC 3 cut(s) 250, 516, 661
EaeI YGGCCR 1 cut(s) 466
Eam1104I CTCTTC 3 cut(s) 572, 699, 717
EarI CTCTTC 3 cut(s) 572, 699, 717
Eco130I CCWWGG 1 cut(s) 497
Eco57I CTGAAG 1 cut(s) 375
EcoT14I CCWWGG 1 cut(s) 497
ErhI CCWWGG 1 cut(s) 497
FaeI CATG 3 cut(s) 347, 510, 533
FaiI YATR 6 cut(s) 282, 326, 345, 508, 531, 633
FatI CATG 3 cut(s) 343, 506, 529
FspBI CTAG 3 cut(s) 458, 548, 669
GsaI CCCAGC 2 cut(s) 476, 593
GsuI CTGGAG 1 cut(s) 668
HaeIII GGCC 2 cut(s) 468, 496
HapII CCGG 2 cut(s) 76, 296
Hin1II CATG 3 cut(s) 347, 510, 533
HincII GTYRAC 2 cut(s) 112, 189
HindII GTYRAC 2 cut(s) 112, 189
HinfI GANTC 3 cut(s) 217, 331, 623
HpaII CCGG 2 cut(s) 76, 296
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 5 cut(s) 112, 189, 270, 504, 607
Hpy188I TCNGA 6 cut(s) 250, 431, 521, 618, 628, 719
Hpy188III TCNNGA 3 cut(s) 121, 393, 597
Hpy8I GTNNAC 5 cut(s) 112, 189, 270, 504, 607
HpyAV CCTTC 1 cut(s) 742
HpyCH4III ACNGT 3 cut(s) 101, 116, 739
HpyCH4IV ACGT 2 cut(s) 15, 228
HpyCH4V TGCA 5 cut(s) 51, 343, 484, 607, 732
HpyF10VI GCNNNNNNNGC 1 cut(s) 652
HpyF3I CTNAG 1 cut(s) 335
HpySE526I ACGT 2 cut(s) 15, 228
Hsp92II CATG 3 cut(s) 347, 510, 533
Kzo9I GATC 3 cut(s) 250, 516, 661
LguI GCTCTTC 1 cut(s) 572
LweI GCATC 2 cut(s) 38, 442
MaeI CTAG 3 cut(s) 458, 548, 669
MaeII ACGT 2 cut(s) 15, 228
MaeIII GTNAC 3 cut(s) 67, 218, 347
MalI GATC 3 cut(s) 252, 518, 663
MboI GATC 3 cut(s) 250, 516, 661
MboII GAAGA 5 cut(s) 340, 589, 671, 716, 734
MfeI CAATTG 1 cut(s) 192
MflI RGATCY 1 cut(s) 250
MhlI GDGCHC 2 cut(s) 322, 609
MlsI TGGCCA 1 cut(s) 468
MluCI AATT 5 cut(s) 192, 234, 363, 540, 639
MluNI TGGCCA 1 cut(s) 468
MlyI GAGTC 3 cut(s) 226, 325, 632
MmeI TCCRAC 1 cut(s) 554
MnlI CCTC 9 cut(s) 52, 87, 172, 175, 235, 400, 433, 643, 718
Mox20I TGGCCA 1 cut(s) 468
MscI TGGCCA 1 cut(s) 468
MseI TTAA 2 cut(s) 35, 612
MslI CAYNNNNRTG 1 cut(s) 227
Msp20I TGGCCA 1 cut(s) 468
MspA1I CMGCKG 1 cut(s) 472
MspI CCGG 2 cut(s) 76, 296
MunI CAATTG 1 cut(s) 192
MwoI GCNNNNNNNGC 1 cut(s) 652
NdeII GATC 3 cut(s) 250, 516, 661
NlaIII CATG 3 cut(s) 347, 510, 533
NlaIV GGNNCC 1 cut(s) 252
NmuCI GTSAC 1 cut(s) 218
PaqCI CACCTGC 1 cut(s) 146
PciSI GCTCTTC 1 cut(s) 572
PcsI WCGNNNNNNNCGW 1 cut(s) 212
PflFI GACNNNGTC 1 cut(s) 116
PleI GAGTC 3 cut(s) 225, 325, 631
PpsI GAGTC 3 cut(s) 225, 325, 631
Psp1406I AACGTT 1 cut(s) 15
PspFI CCCAGC 2 cut(s) 472, 589
PspN4I GGNNCC 1 cut(s) 252
PspPI GGNCC 1 cut(s) 494
PsuI RGATCY 1 cut(s) 250
PsyI GACNNNGTC 1 cut(s) 116
PvuII CAGCTG 1 cut(s) 472
RseI CAYNNNNRTG 1 cut(s) 227
SapI GCTCTTC 1 cut(s) 572
SaqAI TTAA 2 cut(s) 35, 612
Sau3AI GATC 3 cut(s) 250, 516, 661
Sau96I GGNCC 1 cut(s) 494
SchI GAGTC 3 cut(s) 226, 325, 632
SduI GDGCHC 2 cut(s) 322, 609
SfaNI GCATC 2 cut(s) 38, 442
SmiMI CAYNNNNRTG 1 cut(s) 227
Sse9I AATT 5 cut(s) 192, 234, 363, 540, 639
SsiI CCGC 3 cut(s) 265, 421, 682
SspMI CTAG 3 cut(s) 458, 548, 669
StyI CCWWGG 1 cut(s) 497
TaaI ACNGT 3 cut(s) 101, 116, 739
TaiI ACGT 2 cut(s) 18, 231
TaqI TCGA 2 cut(s) 544, 664
TasI AATT 5 cut(s) 192, 234, 363, 540, 639
Tru1I TTAA 2 cut(s) 35, 612
Tru9I TTAA 2 cut(s) 35, 612
TscAI CASTG 1 cut(s) 744
TseFI GTSAC 1 cut(s) 218
Tsp45I GTSAC 1 cut(s) 218
TspDTI ATGAA 1 cut(s) 341
TspRI CASTG 1 cut(s) 744
Tth111I GACNNNGTC 1 cut(s) 116
VneI GTGCAC 1 cut(s) 605
XapI RAATTY 1 cut(s) 540
XcmI CCANNNNNNNNNTGG 1 cut(s) 504
XspI CTAG 3 cut(s) 458, 548, 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.