RchiOBHm_Chr7g0226331
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000615
Physical Location & Seq
Reverse (-)
49495959 .. 49497314
1356 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20272

Sequence Viewer

Length: 726 bp
ATGGGAGGACGTTCGATTGATGTTGCCCAGGAACTTCCCTTTCCTAATGCTGCTCGCACTATGGTCTTATTTGGACGCACTGATATTGGAAAAAGTGCAACAGGCAACAGCATTCTTGGCAAAAAAGCCTTCATTTCCAGGCGTAGCTCTAGTGCTGTCATGACCACTACTGAATTGAAGACTGCTATCTTGAGAGATGGACAACAAATTAATGTTATAAACACTCCTGATCTTTTTGATCATTCTGCCAAATCAGACTTTATTGGCAAAGAAATTGCCCAGTGCATTAAATTGGCCGAGGATGGGATCCATGCTGTTCTTGTGGTTATCTCAACTAGAACTCGCTTTACAAAAGAAGAGCAATCTGCAATCTGTAGCTTGGAAAATCTATTTGGACGTAAAATCTTTGACTATACGATTGTTGTCTTTACGGGAGGAGATGTGTTGAAAGAAGATGAGACTTTGGAAGATTATTTGGGCCGTGATTGCCCGGGGCCTTTGAAGGAAATCCTTGGTCTGTGTGGAAATCGCTATGTGCTTTTTGATAACAAGACTAAGGATGAAAGCAAGAGGGTAGAACAAGTGCAGCGGCTACTCTCGCTTGTAAACTTGGTTATATCACAGAATGGTGGGTGGCCATACACGGATGAGAGATTTGCTAAAGGGAAGGTATTTGTTGTTTTCTCTTTTATTTATAGTAATTTCTTGAGATTAATTATTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

241

Amino Acids

26.89

Weight (kDa)

8.29

Isoelectric Point (pI)

34.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIG1 PF04548 20 - 221 9.7e-73 AIG1 family
MMR_HSR1 PF01926 21 - 123 3.6e-07 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000615)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33970 AT1G33970 AT1G33970 AT1G33970 AT1G33970
fragaria_vesca FvH4_5g32530 FvH4_5g32530
malus_domestica MD15G1403700.v1.1
prunus_persica Prupe.1G549700_v2.0.a1 Prupe.1G549700_v2.0.a1
pyrus_communis pycom15g36100
rosa_chinensis RchiOBHm_Chr7g0226331 RchiOBHm_Chr7g0229101 RchiOBHm_Chr7g0229111 RchiOBHm_Chr7g0229141 RchiOBHm_Chr7g0229161 RchiOBHm_Chr7g0229171 RchiOBHm_Chr7g0229211 RchiOBHm_Chr7g0229241 RchiOBHm_Chr7g0229381 RchiOBHm_Chr7g0229761 RchiOBHm_Chr7g0229911
rosa_laevigata RLG00000000796 RLG00000001464 RLG00000001466 RLG00000001469 RLG00000001523 RLG00000001526 RLG00000001529 RLG00000001530 RLG00000001749 RLG00000001913 RLG00000002114 RLG00000002115 RLG00000023248 RLG00000023250
rosa_multiflora Rmu_co8281135.1_g000001 Rmu_sc0000271.1_g000002 Rmu_sc0000271.1_g000007 Rmu_sc0000271.1_g000014 Rmu_sc0000693.1_g000012 Rmu_sc0000693.1_g000015 Rmu_sc0000693.1_g000023 Rmu_sc0001044.1_g000005 Rmu_sc0006689.1_g000007 Rmu_sc0012733.1_g000005
rosa_roxburghii Rroxscaffold_3G00230540 Rroxscaffold_3G00230590 Rroxscaffold_3G00230600 Rroxscaffold_3G00230700 Rroxscaffold_3G00230710 Rroxscaffold_3G00232980 Rroxscaffold_3G00237610
rosa_rugosa Rorug07G0203800 Rorug07G0203900 Rorug07G0256100 Rorug07G0256400 Rorug07G0256400 Rorug07G0256400 Rorug07G0256500 Rorug07G0256600 Rorug07G0256600 Rorug07G0257100 Rorug07G0257200 Rorug07G0257300 Rorug07G0257400
rosa_samantha Rh7DG401100 Rh7DG401300 Rh7DG401900 Rh7DG402100 Rh7DG402300 Rh7DG402700
rosa_wichuraiana Rw0G001910 Rw0G001930 Rw0G001940 Rw7G033790 Rw7G033810 Rw7G033840 Rw7G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 218
AciI CCGC 1 cut(s) 589
AclWI GGATC 2 cut(s) 301, 314
AcoI YGGCCR 2 cut(s) 294, 635
AfiI CCNNNNNNNGG 1 cut(s) 303
AgsI TTSAA 3 cut(s) 178, 448, 502
AjnI CCWGG 2 cut(s) 27, 137
AjuI GAANNNNNNNTTGG 2 cut(s) 375, 407
AluBI AGCT 2 cut(s) 147, 378
AluI AGCT 2 cut(s) 147, 378
Alw26I GTCTC 1 cut(s) 452
AlwI GGATC 2 cut(s) 301, 314
Ama87I CYCGRG 1 cut(s) 490
AoxI GGCC 4 cut(s) 294, 478, 494, 635
ApeKI GCWGC 2 cut(s) 50, 586
AseI ATTAAT 2 cut(s) 210, 713
AspS9I GGNCC 2 cut(s) 478, 494
AsuC2I CCSGG 2 cut(s) 491, 492
AvaI CYCGRG 1 cut(s) 490
BalI TGGCCA 1 cut(s) 637
BamHI GGATCC 1 cut(s) 306
BbsI GAAGAC 1 cut(s) 185
BbvI GCAGC 2 cut(s) 37, 598
BccI CCATC 2 cut(s) 191, 296
BceAI ACGGC 1 cut(s) 465
BciT130I CCWGG 2 cut(s) 29, 139
BclI TGATCA 1 cut(s) 238
BcnI CCSGG 2 cut(s) 491, 492
BcoDI GTCTC 1 cut(s) 452
BfaI CTAG 2 cut(s) 150, 336
BfmI CTRYAG 1 cut(s) 373
BisI GCNGC 3 cut(s) 51, 587, 590
BlsI GCNGC 3 cut(s) 52, 588, 591
Bme1390I CCNGG 4 cut(s) 29, 139, 491, 492
BmeT110I CYCGRG 1 cut(s) 490
BmgT120I GGNCC 2 cut(s) 478, 494
BmiI GGNNCC 2 cut(s) 308, 495
BmrFI CCNGG 4 cut(s) 29, 139, 491, 492
BmrI ACTGGG 1 cut(s) 274
BmuI ACTGGG 1 cut(s) 274
BpiI GAAGAC 1 cut(s) 185
BpuEI CTTGAG 1 cut(s) 211
BpuMI CCSGG 2 cut(s) 491, 492
BsaJI CCNNGG 5 cut(s) 27, 297, 490, 491, 511
BsaXI ACNNNNNCTCC 2 cut(s) 426, 456
Bsc4I CCNNNNNNNGG 1 cut(s) 303
Bse1I ACTGG 1 cut(s) 280
BseBI CCWGG 2 cut(s) 29, 139
BseDI CCNNGG 5 cut(s) 27, 297, 490, 491, 511
BseGI GGATG 3 cut(s) 307, 565, 652
BseLI CCNNNNNNNGG 1 cut(s) 303
BseNI ACTGG 1 cut(s) 280
BseRI GAGGAG 1 cut(s) 450
BseXI GCAGC 2 cut(s) 37, 598
BsgI GTGCAG 1 cut(s) 605
BshFI GGCC 4 cut(s) 296, 480, 496, 637
BsiHKCI CYCGRG 1 cut(s) 490
BsiSI CCGG 1 cut(s) 491
BslI CCNNNNNNNGG 1 cut(s) 303
BsmAI GTCTC 1 cut(s) 452
BsmI GAATGC 1 cut(s) 111
BsnI GGCC 4 cut(s) 296, 480, 496, 637
BsoBI CYCGRG 1 cut(s) 490
Bsp143I GATC 3 cut(s) 229, 238, 306
BspACI CCGC 1 cut(s) 589
BspANI GGCC 4 cut(s) 296, 480, 496, 637
BspHI TCATGA 1 cut(s) 159
BspLI GGNNCC 2 cut(s) 308, 495
BspPI GGATC 2 cut(s) 301, 314
BspQI GCTCTTC 1 cut(s) 351
BsrI ACTGG 1 cut(s) 280
BssECI CCNNGG 5 cut(s) 27, 297, 490, 491, 511
BssMI GATC 3 cut(s) 229, 238, 306
BssT1I CCWWGG 1 cut(s) 511
Bst2UI CCWGG 2 cut(s) 29, 139
Bst6I CTCTTC 1 cut(s) 351
BstC8I GCNNGC 1 cut(s) 55
BstDEI CTNAG 1 cut(s) 555
BstF5I GGATG 3 cut(s) 307, 565, 652
BstKTI GATC 3 cut(s) 232, 241, 309
BstMAI GTCTC 1 cut(s) 452
BstMBI GATC 3 cut(s) 229, 238, 306
BstMWI GCNNNNNNNGC 3 cut(s) 117, 486, 598
BstNI CCWGG 2 cut(s) 29, 139
BstSCI CCNGG 4 cut(s) 27, 137, 489, 490
BstSFI CTRYAG 1 cut(s) 373
BstV1I GCAGC 2 cut(s) 37, 598
BstV2I GAAGAC 1 cut(s) 185
BstX2I RGATCY 1 cut(s) 306
BstYI RGATCY 1 cut(s) 306
BsuRI GGCC 4 cut(s) 296, 480, 496, 637
BtsCI GGATG 3 cut(s) 307, 565, 652
BtsIMutI CAGTG 2 cut(s) 78, 287
Cac8I GCNNGC 1 cut(s) 55
CciI TCATGA 1 cut(s) 159
Cfr13I GGNCC 2 cut(s) 478, 494
Cfr9I CCCGGG 1 cut(s) 490
CseI GACGC 1 cut(s) 84
CviAII CATG 2 cut(s) 160, 311
CviJI RGCY 8 cut(s) 128, 147, 296, 378, 480, 496, 592, 637
CviKI_1 RGCY 8 cut(s) 128, 147, 296, 378, 480, 496, 592, 637
DdeI CTNAG 1 cut(s) 555
DpnI GATC 3 cut(s) 231, 240, 308
DpnII GATC 3 cut(s) 229, 238, 306
EaeI YGGCCR 2 cut(s) 294, 635
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
Eco130I CCWWGG 1 cut(s) 511
Eco88I CYCGRG 1 cut(s) 490
EcoO109I RGGNCCY 1 cut(s) 494
EcoRII CCWGG 2 cut(s) 27, 137
EcoT14I CCWWGG 1 cut(s) 511
ErhI CCWWGG 1 cut(s) 511
FaeI CATG 2 cut(s) 163, 314
FaiI YATR 9 cut(s) 62, 161, 218, 312, 414, 534, 617, 640, 696
FatI CATG 2 cut(s) 159, 310
FbaI TGATCA 1 cut(s) 238
Fnu4HI GCNGC 3 cut(s) 51, 587, 590
FokI GGATG 3 cut(s) 314, 572, 659
Fsp4HI GCNGC 3 cut(s) 51, 587, 590
FspBI CTAG 2 cut(s) 150, 336
GluI GCNGC 3 cut(s) 51, 587, 590
HaeIII GGCC 4 cut(s) 296, 480, 496, 637
HapII CCGG 1 cut(s) 491
HgaI GACGC 1 cut(s) 84
Hin1II CATG 2 cut(s) 163, 314
HpaII CCGG 1 cut(s) 491
Hpy166II GTNNAC 1 cut(s) 607
Hpy188I TCNGA 1 cut(s) 256
Hpy188III TCNNGA 4 cut(s) 160, 190, 227, 706
Hpy8I GTNNAC 1 cut(s) 607
HpyAV CCTTC 3 cut(s) 139, 496, 661
HpyCH4IV ACGT 2 cut(s) 10, 397
HpyCH4V TGCA 4 cut(s) 98, 285, 368, 586
HpyF10VI GCNNNNNNNGC 3 cut(s) 117, 486, 598
HpyF3I CTNAG 1 cut(s) 555
HpySE526I ACGT 2 cut(s) 10, 397
Hsp92II CATG 2 cut(s) 163, 314
Ksp22I TGATCA 1 cut(s) 238
Kzo9I GATC 3 cut(s) 229, 238, 306
LguI GCTCTTC 1 cut(s) 351
LpnPI CCDG 8 cut(s) 14, 41, 87, 124, 151, 240, 293, 504
Lsp1109I GCAGC 2 cut(s) 37, 598
MaeI CTAG 2 cut(s) 150, 336
MaeII ACGT 2 cut(s) 10, 397
MalI GATC 3 cut(s) 231, 240, 308
MboI GATC 3 cut(s) 229, 238, 306
MboII GAAGA 4 cut(s) 190, 368, 464, 479
MflI RGATCY 1 cut(s) 306
MlsI TGGCCA 1 cut(s) 637
MluCI AATT 6 cut(s) 173, 207, 273, 290, 700, 714
MluNI TGGCCA 1 cut(s) 637
MnlI CCTC 3 cut(s) 292, 428, 564
Mox20I TGGCCA 1 cut(s) 637
MscI TGGCCA 1 cut(s) 637
MseI TTAA 3 cut(s) 210, 288, 713
Msp20I TGGCCA 1 cut(s) 637
MspA1I CMGCKG 1 cut(s) 589
MspI CCGG 1 cut(s) 491
MspR9I CCNGG 4 cut(s) 29, 139, 491, 492
Mva1269I GAATGC 1 cut(s) 111
MvaI CCWGG 2 cut(s) 29, 139
MwoI GCNNNNNNNGC 3 cut(s) 117, 486, 598
NciI CCSGG 2 cut(s) 491, 492
NdeII GATC 3 cut(s) 229, 238, 306
NlaIII CATG 2 cut(s) 163, 314
NlaIV GGNNCC 2 cut(s) 308, 495
NmeAIII GCCGAG 1 cut(s) 322
PagI TCATGA 1 cut(s) 159
PciSI GCTCTTC 1 cut(s) 351
PctI GAATGC 1 cut(s) 111
PkrI GCNGC 3 cut(s) 52, 588, 591
PshBI ATTAAT 2 cut(s) 210, 713
PsiI TTATAA 1 cut(s) 218
Psp6I CCWGG 2 cut(s) 27, 137
PspGI CCWGG 2 cut(s) 27, 137
PspN4I GGNNCC 2 cut(s) 308, 495
PspPI GGNCC 2 cut(s) 478, 494
PsrI GAACNNNNNNTAC 2 cut(s) 331, 363
PsuI RGATCY 1 cut(s) 306
SapI GCTCTTC 1 cut(s) 351
SaqAI TTAA 3 cut(s) 210, 288, 713
SatI GCNGC 3 cut(s) 51, 587, 590
Sau3AI GATC 3 cut(s) 229, 238, 306
Sau96I GGNCC 2 cut(s) 478, 494
ScrFI CCNGG 4 cut(s) 29, 139, 491, 492
SetI ASST 5 cut(s) 13, 149, 380, 400, 672
SfcI CTRYAG 1 cut(s) 373
SmaI CCCGGG 1 cut(s) 492
SmlI CTYRAG 2 cut(s) 190, 706
SmoI CTYRAG 2 cut(s) 190, 706
Sse9I AATT 6 cut(s) 173, 207, 273, 290, 700, 714
SsiI CCGC 1 cut(s) 589
SspMI CTAG 2 cut(s) 150, 336
StyD4I CCNGG 4 cut(s) 27, 137, 489, 490
StyI CCWWGG 1 cut(s) 511
TaiI ACGT 2 cut(s) 13, 400
TaqI TCGA 1 cut(s) 14
TasI AATT 6 cut(s) 173, 207, 273, 290, 700, 714
TauI GCSGC 1 cut(s) 592
Tru1I TTAA 3 cut(s) 210, 288, 713
Tru9I TTAA 3 cut(s) 210, 288, 713
TscAI CASTG 2 cut(s) 85, 287
TseI GCWGC 2 cut(s) 50, 586
TspDTI ATGAA 2 cut(s) 121, 576
TspGWI ACGGA 1 cut(s) 659
TspMI CCCGGG 1 cut(s) 490
TspRI CASTG 2 cut(s) 85, 287
VspI ATTAAT 2 cut(s) 210, 713
XmaI CCCGGG 1 cut(s) 490
XspI CTAG 2 cut(s) 150, 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.