Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0003722

Physical Location & Seq

Genomic Coordinates Forward (+)

18834565 .. 18842168

Gene Structure 7604 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g18740.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGGGAGGGGAAAGATTGAAATCAAGAGGATCGAGAACACGACGAATCGGCAAGTGACCTTTTGCAAACGAAGAAATGGGCTGCTGAAGAAAGCATATGAACTATCCATTCTCTGTGATGCTGAAGTTGCCCTCATTGTCTTCTCTACTCGTGGCCGTCTCTACGAGTACTCTAACAACAACAGCATAAGAAACATCATAGAGAGGTACAAGAAGGCATGTTCAGATAGCACAGGATCAACTTCTGTTACTGAAATTAATGCTCAGTATTATCAACAGGAATCGGCAAAACTGAGGCAACAGATTCAAATGCTGCAGAACTCGAACAGGCACTTAATGGGAGATGCCTTGAGCACTCTGAGTATGAAAGAACTAAAGCAGGTGGAGAATAGGCTTGAACGAGGCATTACTAGAATCAGGTCCAAGAAGCATGAACTGCTGCTTGCAGAGATTGAGTACTTCCAGAAAAAGGAGATTGAGCTGGAAAACGAAAATGTTTATCTTCGAACTAAGATATCAGAAGTTGAGAGGCTTCAACAAGCAAACATGGTTCCTGGGTCAGAGATGAATGCGATCCAGGCGTTAGCTTCTCGCAATTTCTTTAGCCAGAATATCGATCGAGGGTGGAGGAGCTACCTTCCCACAGCAAGACAAGAAGAATCTCCATCTTGGGTAACTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

228

Amino Acids

26.45

Weight (kDa)

9.49

Isoelectric Point (pI)

56.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09960 AT4G09960 AT4G09960 AT4G09960 AT4G09960 AT4G09960
fragaria_vesca	FvH4_5g32540 FvH4_5g32540
malus_domestica	MD08G1216500.v1.1 MD15G1403600.v1.1
prunus_persica	Prupe.1G549600_v2.0.a1 Prupe.1G549600_v2.0.a1 Prupe.1G549600_v2.0.a1
pyrus_communis	pycom08g18740 pycom15g36090
rosa_chinensis	RchiOBHm_Chr7g0229221
rosa_laevigata	RLG00000001521
rosa_roxburghii	Rroxscaffold_3G00230530
rosa_rugosa	Rorug07G0256700 Rorug07G0256800 Rorug07G0256900 Rorug07G0256900 Rorug07G0256900 Rorug07G0256900 Rorug07G0257000 Rorug07G0257100 Rorug07G0257100 Rorug07G0257400 Rorug07G0257500 Rorug07G0257600 Rorug07G0257800
rosa_samantha	Rh7BG387100 Rh7CG426500
rosa_wichuraiana	Rw0G001920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	370
Acc36I	ACCTGC	1 cut(s)	370
AclWI	GGATC	3 cut(s)	38, 244, 568
AcoI	YGGCCR	1 cut(s)	154
AcuI	CTGAAG	2 cut(s)	107, 144
AfaI	GTAC	3 cut(s)	170, 209, 458
AfiI	CCNNNNNNNGG	1 cut(s)	469
AgsI	TTSAA	4 cut(s)	20, 308, 398, 536
AjnI	CCWGG	2 cut(s)	553, 576
AluBI	AGCT	3 cut(s)	481, 587, 633
AluI	AGCT	3 cut(s)	481, 587, 633
Alw21I	GWGCWC	1 cut(s)	356
Alw26I	GTCTC	1 cut(s)	164
AlwI	GGATC	3 cut(s)	38, 244, 568
AoxI	GGCC	1 cut(s)	154
ApeKI	GCWGC	3 cut(s)	82, 313, 439
AseI	ATTAAT	1 cut(s)	258
AspS9I	GGNCC	1 cut(s)	420
AsuII	TTCGAA	1 cut(s)	505
AvaII	GGWCC	1 cut(s)	420
BauI	CACGAG	1 cut(s)	150
BbsI	GAAGAC	1 cut(s)	133
Bbv12I	GWGCWC	1 cut(s)	356
BbvI	GCAGC	3 cut(s)	69, 300, 426
BccI	CCATC	1 cut(s)	673
BceAI	ACGGC	1 cut(s)	141
BciT130I	CCWGG	2 cut(s)	555, 578
BcoDI	GTCTC	1 cut(s)	164
BfaI	CTAG	1 cut(s)	411
BfmI	CTRYAG	1 cut(s)	314
BfuAI	ACCTGC	1 cut(s)	370
BisI	GCNGC	3 cut(s)	83, 314, 440
BlsI	GCNGC	3 cut(s)	84, 315, 441
BmcAI	AGTACT	2 cut(s)	170, 458
Bme1390I	CCNGG	2 cut(s)	555, 578
Bme18I	GGWCC	1 cut(s)	420
BmgT120I	GGNCC	1 cut(s)	420
BmiI	GGNNCC	1 cut(s)	552
BmrFI	CCNGG	2 cut(s)	555, 578
BmsI	GCATC	2 cut(s)	109, 334
BpiI	GAAGAC	1 cut(s)	133
Bpu14I	TTCGAA	1 cut(s)	505
BpuEI	CTTGAG	1 cut(s)	370
Bsa29I	ATCGAT	1 cut(s)	615
BsaBI	GATNNNNATC	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	554
Bsc4I	CCNNNNNNNGG	1 cut(s)	469
Bse8I	GATNNNNATC	1 cut(s)	20
BseBI	CCWGG	2 cut(s)	555, 578
BseCI	ATCGAT	1 cut(s)	615
BseDI	CCNNGG	1 cut(s)	554
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	1 cut(s)	469
BseMII	CTCAG	3 cut(s)	278, 284, 350
BseRI	GAGGAG	1 cut(s)	643
BseXI	GCAGC	3 cut(s)	69, 300, 426
Bsh1285I	CGRYCG	1 cut(s)	619
BshFI	GGCC	1 cut(s)	156
BshVI	ATCGAT	1 cut(s)	615
BsiEI	CGRYCG	1 cut(s)	619
BsiHKAI	GWGCWC	1 cut(s)	356
BslI	CCNNNNNNNGG	1 cut(s)	469
BsmAI	GTCTC	1 cut(s)	164
BsmBI	CGTCTC	1 cut(s)	164
BsmI	GAATGC	1 cut(s)	574
BsnI	GGCC	1 cut(s)	156
Bsp119I	TTCGAA	1 cut(s)	505
Bsp1286I	GDGCHC	1 cut(s)	356
Bsp143I	GATC	4 cut(s)	30, 236, 573, 616
BspANI	GGCC	1 cut(s)	156
BspCNI	CTCAG	3 cut(s)	277, 285, 351
BspDI	ATCGAT	1 cut(s)	615
BspLI	GGNNCC	1 cut(s)	552
BspMAI	CTGCAG	1 cut(s)	318
BspMI	ACCTGC	1 cut(s)	370
BspPI	GGATC	3 cut(s)	38, 244, 568
BspT104I	TTCGAA	1 cut(s)	505
BssECI	CCNNGG	1 cut(s)	554
BssMI	GATC	4 cut(s)	30, 236, 573, 616
BssSI	CACGAG	1 cut(s)	150
Bst2BI	CACGAG	1 cut(s)	150
Bst2UI	CCWGG	2 cut(s)	555, 578
BstAPI	GCANNNNNTGC	1 cut(s)	436
BstBI	TTCGAA	1 cut(s)	505
BstC8I	GCNNGC	1 cut(s)	444
BstDEI	CTNAG	4 cut(s)	264, 293, 359, 510
BstKTI	GATC	4 cut(s)	33, 239, 576, 619
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	4 cut(s)	30, 236, 573, 616
BstMCI	CGRYCG	1 cut(s)	619
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 436, 578
BstNI	CCWGG	2 cut(s)	555, 578
BstNSI	RCATGY	1 cut(s)	222
BstSCI	CCNGG	2 cut(s)	553, 576
BstSFI	CTRYAG	1 cut(s)	314
BstV1I	GCAGC	3 cut(s)	69, 300, 426
BstV2I	GAAGAC	1 cut(s)	133
Bsu15I	ATCGAT	1 cut(s)	615
BsuRI	GGCC	1 cut(s)	156
BsuTUI	ATCGAT	1 cut(s)	615
BveI	ACCTGC	1 cut(s)	370
Cac8I	GCNNGC	1 cut(s)	444
Cfr13I	GGNCC	1 cut(s)	420
ClaI	ATCGAT	1 cut(s)	615
Csp6I	GTAC	3 cut(s)	169, 208, 457
CviAII	CATG	3 cut(s)	219, 431, 547
CviJI	RGCY	8 cut(s)	82, 156, 394, 481, 532, 587, 606, 633
CviKI_1	RGCY	8 cut(s)	82, 156, 394, 481, 532, 587, 606, 633
CviQI	GTAC	3 cut(s)	169, 208, 457
DdeI	CTNAG	4 cut(s)	264, 293, 359, 510
DpnI	GATC	4 cut(s)	32, 238, 575, 618
DpnII	GATC	4 cut(s)	30, 236, 573, 616
EaeI	YGGCCR	1 cut(s)	154
Eco32I	GATATC	1 cut(s)	516
Eco47I	GGWCC	1 cut(s)	420
Eco57I	CTGAAG	2 cut(s)	107, 144
EcoRII	CCWGG	2 cut(s)	553, 576
EcoRV	GATATC	1 cut(s)	516
Esp3I	CGTCTC	1 cut(s)	164
FaeI	CATG	3 cut(s)	222, 434, 550
FaiI	YATR	8 cut(s)	97, 99, 188, 200, 220, 365, 432, 548
FatI	CATG	3 cut(s)	218, 430, 546
FauNDI	CATATG	1 cut(s)	97
Fnu4HI	GCNGC	3 cut(s)	83, 314, 440
Fsp4HI	GCNGC	3 cut(s)	83, 314, 440
FspBI	CTAG	1 cut(s)	411
GluI	GCNGC	3 cut(s)	83, 314, 440
HaeIII	GGCC	1 cut(s)	156
Hin1II	CATG	3 cut(s)	222, 434, 550
HinfI	GANTC	5 cut(s)	46, 281, 304, 414, 659
Hpy188I	TCNGA	4 cut(s)	226, 360, 520, 562
Hpy188III	TCNNGA	3 cut(s)	25, 34, 463
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	2 cut(s)	208, 647
HpyCH4V	TGCA	3 cut(s)	66, 316, 446
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 436, 578
HpyF3I	CTNAG	4 cut(s)	264, 293, 359, 510
Hsp92II	CATG	3 cut(s)	222, 434, 550
Kzo9I	GATC	4 cut(s)	30, 236, 573, 616
LmnI	GCTCC	1 cut(s)	630
Lsp1109I	GCAGC	3 cut(s)	69, 300, 426
LweI	GCATC	2 cut(s)	109, 334
MaeI	CTAG	1 cut(s)	411
MaeIII	GTNAC	3 cut(s)	55, 247, 673
MalI	GATC	4 cut(s)	32, 238, 575, 618
MboI	GATC	4 cut(s)	30, 236, 573, 616
MboII	GAAGA	5 cut(s)	84, 100, 133, 494, 668
MhlI	GDGCHC	1 cut(s)	356
MluCI	AATT	3 cut(s)	255, 595, 679
MnlI	CCTC	8 cut(s)	21, 143, 198, 288, 395, 522, 614, 621
MseI	TTAA	2 cut(s)	258, 335
MspR9I	CCNGG	2 cut(s)	555, 578
Mva1269I	GAATGC	1 cut(s)	574
MvaI	CCWGG	2 cut(s)	555, 578
MwoI	GCNNNNNNNGC	3 cut(s)	128, 436, 578
NdeI	CATATG	1 cut(s)	97
NdeII	GATC	4 cut(s)	30, 236, 573, 616
NlaIII	CATG	3 cut(s)	222, 434, 550
NlaIV	GGNNCC	1 cut(s)	552
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	222
NspV	TTCGAA	1 cut(s)	505
PaqCI	CACCTGC	1 cut(s)	370
PctI	GAATGC	1 cut(s)	574
PfeI	GAWTC	5 cut(s)	46, 281, 304, 414, 659
PkrI	GCNGC	3 cut(s)	84, 315, 441
Ple19I	CGATCG	1 cut(s)	619
PshBI	ATTAAT	1 cut(s)	258
Psp6I	CCWGG	2 cut(s)	553, 576
PspGI	CCWGG	2 cut(s)	553, 576
PspN4I	GGNNCC	1 cut(s)	552
PspPI	GGNCC	1 cut(s)	420
PstI	CTGCAG	1 cut(s)	318
PvuI	CGATCG	1 cut(s)	619
RsaI	GTAC	3 cut(s)	170, 209, 458
RsaNI	GTAC	3 cut(s)	169, 208, 457
SaqAI	TTAA	2 cut(s)	258, 335
SatI	GCNGC	3 cut(s)	83, 314, 440
Sau3AI	GATC	4 cut(s)	30, 236, 573, 616
Sau96I	GGNCC	1 cut(s)	420
ScaI	AGTACT	2 cut(s)	170, 458
ScrFI	CCNGG	2 cut(s)	555, 578
SduI	GDGCHC	1 cut(s)	356
SetI	ASST	8 cut(s)	62, 209, 384, 422, 483, 589, 635, 639
SfaNI	GCATC	2 cut(s)	109, 334
SfcI	CTRYAG	1 cut(s)	314
SfuI	TTCGAA	1 cut(s)	505
SinI	GGWCC	1 cut(s)	420
SmlI	CTYRAG	1 cut(s)	349
SmoI	CTYRAG	1 cut(s)	349
Sse9I	AATT	3 cut(s)	255, 595, 679
SspMI	CTAG	1 cut(s)	411
StyD4I	CCNGG	2 cut(s)	553, 576
TaqI	TCGA	5 cut(s)	33, 323, 505, 615, 619
TasI	AATT	3 cut(s)	255, 595, 679
TatI	WGTACW	2 cut(s)	168, 456
TfiI	GAWTC	5 cut(s)	46, 281, 304, 414, 659
Tru1I	TTAA	2 cut(s)	258, 335
Tru9I	TTAA	2 cut(s)	258, 335
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	3 cut(s)	82, 313, 439
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	4 cut(s)	114, 380, 447, 581
VpaK11BI	GGWCC	1 cut(s)	420
VspI	ATTAAT	1 cut(s)	258
XceI	RCATGY	1 cut(s)	222
XspI	CTAG	1 cut(s)	411
ZrmI	AGTACT	2 cut(s)	170, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.