Rw0G001920
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00060
OG0003722
Physical Location & Seq
Forward (+)
138004 .. 144772
6769 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G001920.1

Sequence Viewer

Length: 672 bp
ATGGGGAGAGGAAAGATTGAGATAAAGAGGATTGAGAACACCACCAACCGTCAAGTGACCTTCTGCAAGAGAAGAAATGGATTGTTGAAGAAAGCTTATGAGCTCTCCATTCTCTGTGAGGCTGAAGTTGCTCTCATTGTCTTCTCTAGCCGTGGCCGCCTCTACGAGTATTCTAACAACAACAGCATAAGAAATACTATAGAGAGGTACAAGAAGGCATCTTCCGATAACTCAGGTGCAACCACTATTACAGAAATCAATGCTCAATATTACCAACAGGAATCGGCAAAGCTGAGGCACCAAATTCAAATGCTGCAGAATTCTAACAGGCACTTAATGGGAGATTCGTTGACTAATCTGACAGTGAAAGAACTAAAGCAGCTAGAGAACAGGCTTGAACGAGGCCTTACTAGAATCAGGTCCAAGAAGCATGAAATGTTGCTTGCTGAAATTGAGTACTTGCAGAAAAGGGAGGTTGAGCTGGAAAACGAGAATGTTTTAATTCGAGCTAAGATAGCAGAAGTTGAGAGGCTTCAGCAAGCAGACCTGGTTTCTGGGGCAGAGTTTAATGCAATCCAGGCGTTAGCTTCTCGCAATTTTTTTGGCTCCACTATGGTTGAGGGTGAGGCTTCATACTCACAGCCAGAGAAGAAATTGCTCCATCTGGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

223

Amino Acids

25.65

Weight (kDa)

9.37

Isoelectric Point (pI)

41.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 10 - 57 5.2e-26 SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box PF01486 87 - 172 5.4e-27 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 297
AciI CCGC 1 cut(s) 157
AcoI YGGCCR 1 cut(s) 154
AcsI RAATTY 2 cut(s) 303, 319
AcuI CTGAAG 2 cut(s) 144, 518
AfaI GTAC 2 cut(s) 209, 458
AgsI TTSAA 3 cut(s) 88, 308, 398
AjnI CCWGG 2 cut(s) 546, 576
AluBI AGCT 7 cut(s) 95, 103, 292, 382, 481, 509, 587
AluI AGCT 7 cut(s) 95, 103, 292, 382, 481, 509, 587
Alw21I GWGCWC 1 cut(s) 105
AoxI GGCC 2 cut(s) 154, 403
ApeKI GCWGC 2 cut(s) 313, 379
ApoI RAATTY 2 cut(s) 303, 319
AspS9I GGNCC 1 cut(s) 420
AsuHPI GGTGA 1 cut(s) 635
AvaII GGWCC 1 cut(s) 420
BanI GGYRCC 1 cut(s) 297
BanII GRGCYC 1 cut(s) 105
BbsI GAAGAC 1 cut(s) 133
Bbv12I GWGCWC 1 cut(s) 105
BbvCI CCTCAGC 1 cut(s) 293
BbvI GCAGC 2 cut(s) 300, 391
BccI CCATC 1 cut(s) 669
BceAI ACGGC 1 cut(s) 135
BciT130I CCWGG 2 cut(s) 548, 578
BfaI CTAG 3 cut(s) 147, 383, 411
BfmI CTRYAG 2 cut(s) 198, 314
BisI GCNGC 3 cut(s) 157, 314, 380
BlsI GCNGC 3 cut(s) 158, 315, 381
BmcAI AGTACT 1 cut(s) 458
Bme1390I CCNGG 2 cut(s) 548, 578
Bme18I GGWCC 1 cut(s) 420
BmgT120I GGNCC 1 cut(s) 420
BmiI GGNNCC 2 cut(s) 299, 607
BmrFI CCNGG 2 cut(s) 548, 578
BmsI GCATC 1 cut(s) 227
BpiI GAAGAC 1 cut(s) 133
Bpu10I CCTNAGC 1 cut(s) 293
BsaJI CCNNGG 1 cut(s) 151
BseBI CCWGG 2 cut(s) 548, 578
BseDI CCNNGG 1 cut(s) 151
BseMII CTCAG 2 cut(s) 246, 284
BseXI GCAGC 2 cut(s) 300, 391
BshFI GGCC 2 cut(s) 156, 405
BshNI GGYRCC 1 cut(s) 297
BsiHKAI GWGCWC 1 cut(s) 105
BsnI GGCC 2 cut(s) 156, 405
Bsp1286I GDGCHC 1 cut(s) 105
BspACI CCGC 1 cut(s) 157
BspANI GGCC 2 cut(s) 156, 405
BspCNI CTCAG 2 cut(s) 245, 285
BspLI GGNNCC 2 cut(s) 299, 607
BspMAI CTGCAG 1 cut(s) 318
BspT107I GGYRCC 1 cut(s) 297
BssECI CCNNGG 1 cut(s) 151
Bst2UI CCWGG 2 cut(s) 548, 578
Bst4CI ACNGT 2 cut(s) 50, 364
BstC8I GCNNGC 2 cut(s) 444, 540
BstDEI CTNAG 3 cut(s) 232, 293, 510
BstDSI CCRYGG 1 cut(s) 151
BstMWI GCNNNNNNNGC 4 cut(s) 128, 156, 515, 578
BstNI CCWGG 2 cut(s) 548, 578
BstSCI CCNGG 2 cut(s) 546, 576
BstSFI CTRYAG 2 cut(s) 198, 314
BstV1I GCAGC 2 cut(s) 300, 391
BstV2I GAAGAC 1 cut(s) 133
BsuRI GGCC 2 cut(s) 156, 405
BtgI CCRYGG 1 cut(s) 151
BtsIMutI CAGTG 1 cut(s) 369
Cac8I GCNNGC 2 cut(s) 444, 540
Cfr13I GGNCC 1 cut(s) 420
CsiI ACCWGGT 1 cut(s) 546
Csp6I GTAC 2 cut(s) 208, 457
CspCI CAANNNNNGTGG 2 cut(s) 598, 633
CviAII CATG 1 cut(s) 431
CviQI GTAC 2 cut(s) 208, 457
DdeI CTNAG 3 cut(s) 232, 293, 510
EaeI YGGCCR 1 cut(s) 154
Ecl136II GAGCTC 1 cut(s) 103
Eco147I AGGCCT 1 cut(s) 405
Eco24I GRGCYC 1 cut(s) 105
Eco47I GGWCC 1 cut(s) 420
Eco53kI GAGCTC 1 cut(s) 103
Eco57I CTGAAG 2 cut(s) 144, 518
EcoICRI GAGCTC 1 cut(s) 103
EcoRI GAATTC 1 cut(s) 319
EcoRII CCWGG 2 cut(s) 546, 576
EcoT38I GRGCYC 1 cut(s) 105
FaeI CATG 1 cut(s) 434
FaiI YATR 6 cut(s) 99, 188, 200, 432, 614, 634
FatI CATG 1 cut(s) 430
Fnu4HI GCNGC 3 cut(s) 157, 314, 380
FriOI GRGCYC 1 cut(s) 105
Fsp4HI GCNGC 3 cut(s) 157, 314, 380
FspBI CTAG 3 cut(s) 147, 383, 411
GluI GCNGC 3 cut(s) 157, 314, 380
HaeIII GGCC 2 cut(s) 156, 405
Hin1II CATG 1 cut(s) 434
HincII GTYRAC 1 cut(s) 351
HindII GTYRAC 1 cut(s) 351
HindIII AAGCTT 1 cut(s) 93
HinfI GANTC 3 cut(s) 281, 344, 414
HphI GGTGA 1 cut(s) 635
Hpy166II GTNNAC 1 cut(s) 351
Hpy188I TCNGA 2 cut(s) 226, 360
Hpy8I GTNNAC 1 cut(s) 351
HpyAV CCTTC 2 cut(s) 70, 208
HpyCH4III ACNGT 2 cut(s) 50, 364
HpyCH4V TGCA 5 cut(s) 66, 239, 316, 463, 572
HpyF10VI GCNNNNNNNGC 4 cut(s) 128, 156, 515, 578
HpyF3I CTNAG 3 cut(s) 232, 293, 510
Hsp92II CATG 1 cut(s) 434
LmnI GCTCC 2 cut(s) 611, 663
Lsp1109I GCAGC 2 cut(s) 300, 391
LweI GCATC 1 cut(s) 227
MabI ACCWGGT 1 cut(s) 546
MaeI CTAG 3 cut(s) 147, 383, 411
MaeIII GTNAC 1 cut(s) 55
MboII GAAGA 5 cut(s) 84, 100, 133, 213, 661
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 6 cut(s) 303, 319, 450, 501, 595, 653
MseI TTAA 3 cut(s) 335, 500, 567
MspR9I CCNGG 2 cut(s) 548, 578
MvaI CCWGG 2 cut(s) 548, 578
MwoI GCNNNNNNNGC 4 cut(s) 128, 156, 515, 578
NlaIII CATG 1 cut(s) 434
NlaIV GGNNCC 2 cut(s) 299, 607
NmuCI GTSAC 1 cut(s) 55
PceI AGGCCT 1 cut(s) 405
PfeI GAWTC 3 cut(s) 281, 344, 414
PkrI GCNGC 3 cut(s) 158, 315, 381
Psp124BI GAGCTC 1 cut(s) 105
Psp6I CCWGG 2 cut(s) 546, 576
PspGI CCWGG 2 cut(s) 546, 576
PspN4I GGNNCC 2 cut(s) 299, 607
PspPI GGNCC 1 cut(s) 420
PstI CTGCAG 1 cut(s) 318
RsaI GTAC 2 cut(s) 209, 458
RsaNI GTAC 2 cut(s) 208, 457
SacI GAGCTC 1 cut(s) 105
SaqAI TTAA 3 cut(s) 335, 500, 567
SatI GCNGC 3 cut(s) 157, 314, 380
Sau96I GGNCC 1 cut(s) 420
ScaI AGTACT 1 cut(s) 458
ScrFI CCNGG 2 cut(s) 548, 578
SduI GDGCHC 1 cut(s) 105
SexAI ACCWGGT 1 cut(s) 546
SfaNI GCATC 1 cut(s) 227
SfcI CTRYAG 2 cut(s) 198, 314
SinI GGWCC 1 cut(s) 420
Sse9I AATT 6 cut(s) 303, 319, 450, 501, 595, 653
SseBI AGGCCT 1 cut(s) 405
SsiI CCGC 1 cut(s) 157
SspI AATATT 1 cut(s) 269
SspMI CTAG 3 cut(s) 147, 383, 411
SstI GAGCTC 1 cut(s) 105
StuI AGGCCT 1 cut(s) 405
StyD4I CCNGG 2 cut(s) 546, 576
TaaI ACNGT 2 cut(s) 50, 364
TaqI TCGA 1 cut(s) 505
TasI AATT 6 cut(s) 303, 319, 450, 501, 595, 653
TatI WGTACW 1 cut(s) 456
TauI GCSGC 1 cut(s) 159
TfiI GAWTC 3 cut(s) 281, 344, 414
Tru1I TTAA 3 cut(s) 335, 500, 567
Tru9I TTAA 3 cut(s) 335, 500, 567
TscAI CASTG 1 cut(s) 369
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 2 cut(s) 313, 379
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 2 cut(s) 447, 621
TspRI CASTG 1 cut(s) 369
VpaK11BI GGWCC 1 cut(s) 420
XapI RAATTY 2 cut(s) 303, 319
XspI CTAG 3 cut(s) 147, 383, 411
ZrmI AGTACT 1 cut(s) 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.