Rorug07G0257800
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0003722
Physical Location & Seq
Reverse (-)
24148858 .. 24155739
6882 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0257800.1

Sequence Viewer

Length: 780 bp
ATGGTTTCGATCTCCGGTTCCGACCAGAGACGCTGCACGCACCTCACGCGCTGCCGTGAGCCCCGCCATCATAGCCTAATGGTTCCGGGGATGGTGAAGAACAGAGGACTGCAAGAAGTAGCATGTTATGGAGATTTTGGTCTTGGCAGAGCAGGTTATGAAACAATTACAATTAGAAGTGCTTTCCTAGTTACCATATCCCGGAATGAACATAATAAACCAAATCATACGGGAATGGACTCGAGCATGTGCACTTGGATTTGGACAAATGATCAAAAGTCGGGAACGAATCCGAATGTGGACGAGCACTCCATATCTAGGGGTCCATTCACGTGCAATTGTCATGACTTAAACAGAAAGAAGAAGTCTTTGAGCGATACAAATGACTTCAAGATTTGGAAGTTATATAAGGGGTTCAAACCAGTTTATGTCATTTCCAATATAAGCAAAAGGAATGTGAAGAGGAATGAGTATGTATTGTTTGAAGCTCCTAGGCAACAGCAAAAGAAGGCCTCCAAAAAGAGAGGACAAGGTAAAGAAAAGACAGCAGGAATACAGAATGATGCAGTCAGGACTTTAGAAAGAATTCATATTACAAACATAGCTAATATAAAAATTTTCACTCAGTATTTCATGCATTATGCCAGTACAGCACAATCAACCTTAGATGAAGCAACTTCAGATAAGTACCTTAATAGATTACCTGGTTCTATAGAAGAATTCCTACGAGCTCAATGGGATGAGGCTTTAACCAAGCCAGGACCCTCAGACATGGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

259

Amino Acids

29.6

Weight (kDa)

9.59

Isoelectric Point (pI)

41.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Caulimovir_coat_dom PF22909 185 - 249 1.3e-12 Caulimovirus coat protein, conserved domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 143
AccII CGCG 1 cut(s) 49
AciI CCGC 1 cut(s) 64
AcsI RAATTY 3 cut(s) 585, 615, 719
AcuI CTGAAG 1 cut(s) 663
AcvI CACGTG 1 cut(s) 333
AfaI GTAC 2 cut(s) 649, 689
AfiI CCNNNNNNNGG 2 cut(s) 201, 318
AgsI TTSAA 3 cut(s) 391, 418, 485
AjnI CCWGG 2 cut(s) 703, 757
AluBI AGCT 3 cut(s) 488, 605, 731
AluI AGCT 3 cut(s) 488, 605, 731
Alw21I GWGCWC 3 cut(s) 254, 309, 733
Alw26I GTCTC 1 cut(s) 22
Alw44I GTGCAC 1 cut(s) 250
Ama87I CYCGRG 1 cut(s) 241
AoxI GGCC 1 cut(s) 510
ApaLI GTGCAC 1 cut(s) 250
ApeKI GCWGC 2 cut(s) 33, 51
ApoI RAATTY 3 cut(s) 585, 615, 719
Asp700I GAANNNNTTC 1 cut(s) 585
AspA2I CCTAGG 1 cut(s) 491
AspLEI GCGC 1 cut(s) 51
AspS9I GGNCC 2 cut(s) 323, 761
AsuC2I CCSGG 2 cut(s) 87, 202
AsuHPI GGTGA 1 cut(s) 106
AvaI CYCGRG 1 cut(s) 241
AvaII GGWCC 2 cut(s) 323, 761
AvrII CCTAGG 1 cut(s) 491
BaeGI GKGCMC 1 cut(s) 254
BanII GRGCYC 2 cut(s) 63, 733
BarI GAAGNNNNNNTAC 2 cut(s) 708, 740
BbrPI CACGTG 1 cut(s) 333
Bbv12I GWGCWC 3 cut(s) 254, 309, 733
BbvI GCAGC 2 cut(s) 20, 38
BccI CCATC 2 cut(s) 75, 85
BceAI ACGGC 1 cut(s) 39
BciT130I CCWGG 2 cut(s) 705, 759
BclI TGATCA 1 cut(s) 271
BcnI CCSGG 2 cut(s) 87, 202
BcoDI GTCTC 1 cut(s) 22
BfaI CTAG 3 cut(s) 188, 318, 492
BfmI CTRYAG 1 cut(s) 711
BfuAI ACCTGC 1 cut(s) 143
BisI GCNGC 2 cut(s) 34, 52
BlnI CCTAGG 1 cut(s) 491
BlsI GCNGC 2 cut(s) 35, 53
Bme1390I CCNGG 4 cut(s) 87, 202, 705, 759
Bme18I GGWCC 2 cut(s) 323, 761
BmeT110I CYCGRG 1 cut(s) 241
BmgT120I GGNCC 2 cut(s) 323, 761
BmiI GGNNCC 4 cut(s) 19, 84, 324, 763
BmrFI CCNGG 4 cut(s) 87, 202, 705, 759
BmsI GCATC 1 cut(s) 553
BpuMI CCSGG 2 cut(s) 87, 202
BsaAI YACGTR 1 cut(s) 333
BsaJI CCNNGG 2 cut(s) 86, 491
BsaWI WCCGGW 1 cut(s) 14
BsaXI ACNNNNNCTCC 2 cut(s) 293, 323
Bsc4I CCNNNNNNNGG 2 cut(s) 201, 318
Bse1I ACTGG 2 cut(s) 422, 645
BseBI CCWGG 2 cut(s) 705, 759
BseDI CCNNGG 2 cut(s) 86, 491
BseGI GGATG 2 cut(s) 96, 745
BseLI CCNNNNNNNGG 2 cut(s) 201, 318
BseMII CTCAG 2 cut(s) 638, 780
BseNI ACTGG 2 cut(s) 422, 645
BseSI GKGCMC 1 cut(s) 254
BseXI GCAGC 2 cut(s) 20, 38
BsgI GTGCAG 1 cut(s) 19
Bsh1236I CGCG 1 cut(s) 49
BshFI GGCC 1 cut(s) 512
BsiHKAI GWGCWC 3 cut(s) 254, 309, 733
BsiHKCI CYCGRG 1 cut(s) 241
BsiSI CCGG 3 cut(s) 15, 86, 202
BslI CCNNNNNNNGG 2 cut(s) 201, 318
BsmAI GTCTC 1 cut(s) 22
BsmBI CGTCTC 1 cut(s) 22
BsnI GGCC 1 cut(s) 512
BsoBI CYCGRG 1 cut(s) 241
Bsp1286I GDGCHC 4 cut(s) 63, 254, 309, 733
Bsp143I GATC 2 cut(s) 9, 271
BspACI CCGC 1 cut(s) 64
BspANI GGCC 1 cut(s) 512
BspCNI CTCAG 2 cut(s) 637, 779
BspFNI CGCG 1 cut(s) 49
BspHI TCATGA 1 cut(s) 343
BspLI GGNNCC 4 cut(s) 19, 84, 324, 763
BspMI ACCTGC 1 cut(s) 143
BsrI ACTGG 2 cut(s) 422, 645
BssECI CCNNGG 2 cut(s) 86, 491
BssMI GATC 2 cut(s) 9, 271
BssT1I CCWWGG 1 cut(s) 491
Bst2UI CCWGG 2 cut(s) 705, 759
Bst6I CTCTTC 1 cut(s) 455
BstBAI YACGTR 1 cut(s) 333
BstC8I GCNNGC 1 cut(s) 38
BstDEI CTNAG 3 cut(s) 624, 664, 766
BstF5I GGATG 2 cut(s) 96, 745
BstFNI CGCG 1 cut(s) 49
BstHHI GCGC 1 cut(s) 51
BstKTI GATC 2 cut(s) 12, 274
BstMAI GTCTC 1 cut(s) 22
BstMBI GATC 2 cut(s) 9, 271
BstMWI GCNNNNNNNGC 3 cut(s) 46, 72, 650
BstNI CCWGG 2 cut(s) 705, 759
BstNSI RCATGY 2 cut(s) 126, 250
BstSCI CCNGG 4 cut(s) 85, 200, 703, 757
BstSFI CTRYAG 1 cut(s) 711
BstSLI GKGCMC 1 cut(s) 254
BstUI CGCG 1 cut(s) 49
BstV1I GCAGC 2 cut(s) 20, 38
BsuRI GGCC 1 cut(s) 512
BtsCI GGATG 2 cut(s) 96, 745
BveI ACCTGC 1 cut(s) 143
Cac8I GCNNGC 1 cut(s) 38
CciI TCATGA 1 cut(s) 343
CfoI GCGC 1 cut(s) 51
Cfr13I GGNCC 2 cut(s) 323, 761
CseI GACGC 1 cut(s) 39
CsiI ACCWGGT 1 cut(s) 703
Csp6I GTAC 2 cut(s) 648, 688
CviAII CATG 5 cut(s) 123, 247, 344, 634, 772
CviJI RGCY 8 cut(s) 61, 75, 488, 512, 605, 731, 746, 757
CviKI_1 RGCY 8 cut(s) 61, 75, 488, 512, 605, 731, 746, 757
CviQI GTAC 2 cut(s) 648, 688
DdeI CTNAG 3 cut(s) 624, 664, 766
DpnI GATC 2 cut(s) 11, 273
DpnII GATC 2 cut(s) 9, 271
Eam1104I CTCTTC 1 cut(s) 455
EarI CTCTTC 1 cut(s) 455
Ecl136II GAGCTC 1 cut(s) 731
Eco130I CCWWGG 1 cut(s) 491
Eco147I AGGCCT 1 cut(s) 512
Eco24I GRGCYC 2 cut(s) 63, 733
Eco47I GGWCC 2 cut(s) 323, 761
Eco53kI GAGCTC 1 cut(s) 731
Eco57I CTGAAG 1 cut(s) 663
Eco72I CACGTG 1 cut(s) 333
Eco88I CYCGRG 1 cut(s) 241
EcoICRI GAGCTC 1 cut(s) 731
EcoO109I RGGNCCY 1 cut(s) 761
EcoRI GAATTC 2 cut(s) 585, 719
EcoRII CCWGG 2 cut(s) 703, 757
EcoT14I CCWWGG 1 cut(s) 491
EcoT22I ATGCAT 1 cut(s) 639
EcoT38I GRGCYC 2 cut(s) 63, 733
ErhI CCWWGG 1 cut(s) 491
Esp3I CGTCTC 1 cut(s) 22
FaeI CATG 5 cut(s) 126, 250, 347, 637, 775
FatI CATG 5 cut(s) 122, 246, 343, 633, 771
FauI CCCGC 1 cut(s) 71
FbaI TGATCA 1 cut(s) 271
Fnu4HI GCNGC 2 cut(s) 34, 52
FokI GGATG 2 cut(s) 103, 752
FriOI GRGCYC 2 cut(s) 63, 733
Fsp4HI GCNGC 2 cut(s) 34, 52
FspBI CTAG 3 cut(s) 188, 318, 492
GlaI GCGC 1 cut(s) 50
GluI GCNGC 2 cut(s) 34, 52
HaeIII GGCC 1 cut(s) 512
HapII CCGG 3 cut(s) 15, 86, 202
HgaI GACGC 1 cut(s) 39
HhaI GCGC 1 cut(s) 51
Hin1II CATG 5 cut(s) 126, 250, 347, 637, 775
Hin6I GCGC 1 cut(s) 49
HinP1I GCGC 1 cut(s) 49
HinfI GANTC 2 cut(s) 239, 289
HpaII CCGG 3 cut(s) 15, 86, 202
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 2 cut(s) 252, 301
Hpy188I TCNGA 4 cut(s) 22, 294, 682, 769
Hpy188III TCNNGA 4 cut(s) 282, 344, 391, 571
Hpy8I GTNNAC 2 cut(s) 252, 301
HpyAV CCTTC 1 cut(s) 502
HpyCH4IV ACGT 1 cut(s) 332
HpyCH4V TGCA 6 cut(s) 36, 112, 252, 336, 566, 637
HpyF10VI GCNNNNNNNGC 3 cut(s) 46, 72, 650
HpyF3I CTNAG 3 cut(s) 624, 664, 766
HpySE526I ACGT 1 cut(s) 332
Hsp92II CATG 5 cut(s) 126, 250, 347, 637, 775
HspAI GCGC 1 cut(s) 49
Ksp22I TGATCA 1 cut(s) 271
Kzo9I GATC 2 cut(s) 9, 271
LmnI GCTCC 1 cut(s) 493
Lsp1109I GCAGC 2 cut(s) 20, 38
LweI GCATC 1 cut(s) 553
MabI ACCWGGT 1 cut(s) 703
MaeI CTAG 3 cut(s) 188, 318, 492
MaeII ACGT 1 cut(s) 332
MaeIII GTNAC 1 cut(s) 190
MalI GATC 2 cut(s) 11, 273
MboI GATC 2 cut(s) 9, 271
MboII GAAGA 4 cut(s) 109, 373, 472, 728
MfeI CAATTG 1 cut(s) 337
MhlI GDGCHC 4 cut(s) 63, 254, 309, 733
MluCI AATT 6 cut(s) 165, 171, 337, 585, 615, 719
MlyI GAGTC 1 cut(s) 233
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 7 cut(s) 53, 98, 456, 518, 523, 736, 775
Mph1103I ATGCAT 1 cut(s) 639
MroXI GAANNNNTTC 1 cut(s) 585
MseI TTAA 3 cut(s) 350, 693, 749
MslI CAYNNNNRTG 1 cut(s) 331
MspI CCGG 3 cut(s) 15, 86, 202
MspR9I CCNGG 4 cut(s) 87, 202, 705, 759
MunI CAATTG 1 cut(s) 337
MvaI CCWGG 2 cut(s) 705, 759
MvnI CGCG 1 cut(s) 49
MwoI GCNNNNNNNGC 3 cut(s) 46, 72, 650
NciI CCSGG 2 cut(s) 87, 202
NdeII GATC 2 cut(s) 9, 271
NlaIII CATG 5 cut(s) 126, 250, 347, 637, 775
NlaIV GGNNCC 4 cut(s) 19, 84, 324, 763
NsiI ATGCAT 1 cut(s) 639
NspI RCATGY 2 cut(s) 126, 250
PaeR7I CTCGAG 1 cut(s) 241
PagI TCATGA 1 cut(s) 343
PceI AGGCCT 1 cut(s) 512
PdmI GAANNNNTTC 1 cut(s) 585
PfeI GAWTC 1 cut(s) 289
PfoI TCCNGGA 1 cut(s) 200
PkrI GCNGC 2 cut(s) 35, 53
PleI GAGTC 1 cut(s) 233
PmaCI CACGTG 1 cut(s) 333
PmlI CACGTG 1 cut(s) 333
PpsI GAGTC 1 cut(s) 233
Ppu21I YACGTR 1 cut(s) 333
PpuMI RGGWCCY 1 cut(s) 761
Psp124BI GAGCTC 1 cut(s) 733
Psp5II RGGWCCY 1 cut(s) 761
Psp6I CCWGG 2 cut(s) 703, 757
PspCI CACGTG 1 cut(s) 333
PspGI CCWGG 2 cut(s) 703, 757
PspN4I GGNNCC 4 cut(s) 19, 84, 324, 763
PspPI GGNCC 2 cut(s) 323, 761
PspPPI RGGWCCY 1 cut(s) 761
PspXI VCTCGAGB 1 cut(s) 241
RsaI GTAC 2 cut(s) 649, 689
RsaNI GTAC 2 cut(s) 648, 688
RseI CAYNNNNRTG 1 cut(s) 331
SacI GAGCTC 1 cut(s) 733
SaqAI TTAA 3 cut(s) 350, 693, 749
SatI GCNGC 2 cut(s) 34, 52
Sau3AI GATC 2 cut(s) 9, 271
Sau96I GGNCC 2 cut(s) 323, 761
SchI GAGTC 1 cut(s) 233
ScrFI CCNGG 4 cut(s) 87, 202, 705, 759
SduI GDGCHC 4 cut(s) 63, 254, 309, 733
SexAI ACCWGGT 1 cut(s) 703
SfaNI GCATC 1 cut(s) 553
SfcI CTRYAG 1 cut(s) 711
Sfr274I CTCGAG 1 cut(s) 241
SinI GGWCC 2 cut(s) 323, 761
SlaI CTCGAG 1 cut(s) 241
SmiMI CAYNNNNRTG 1 cut(s) 331
SmlI CTYRAG 1 cut(s) 241
SmoI CTYRAG 1 cut(s) 241
Sse9I AATT 6 cut(s) 165, 171, 337, 585, 615, 719
SseBI AGGCCT 1 cut(s) 512
SsiI CCGC 1 cut(s) 64
SspMI CTAG 3 cut(s) 188, 318, 492
SstI GAGCTC 1 cut(s) 733
StuI AGGCCT 1 cut(s) 512
StyD4I CCNGG 4 cut(s) 85, 200, 703, 757
StyI CCWWGG 1 cut(s) 491
TaiI ACGT 1 cut(s) 335
TaqI TCGA 2 cut(s) 8, 242
TasI AATT 6 cut(s) 165, 171, 337, 585, 615, 719
TatI WGTACW 1 cut(s) 647
TfiI GAWTC 1 cut(s) 289
Tru1I TTAA 3 cut(s) 350, 693, 749
Tru9I TTAA 3 cut(s) 350, 693, 749
TseI GCWGC 2 cut(s) 33, 51
TspDTI ATGAA 5 cut(s) 174, 222, 578, 622, 684
VneI GTGCAC 1 cut(s) 250
VpaK11BI GGWCC 2 cut(s) 323, 761
XapI RAATTY 3 cut(s) 585, 615, 719
XceI RCATGY 2 cut(s) 126, 250
XhoI CTCGAG 1 cut(s) 241
XmaJI CCTAGG 1 cut(s) 491
XmnI GAANNNNTTC 1 cut(s) 585
XspI CTAG 3 cut(s) 188, 318, 492
Zsp2I ATGCAT 1 cut(s) 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.