Rorug07G0257600
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0003722
Physical Location & Seq
Reverse (-)
24135807 .. 24137246
1440 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0257600.1

Sequence Viewer

Length: 1440 bp
ATGTCAACACCACCGGTCCTTTCTCTTGCAACAGGGACTTGTAGTTCATACGATGGCGAGTGCATTGGCCAAGTTCAAAGAATTCTCTTTTATACAGGATTGCCTCTAATAGCTGTGGGAGTGTCCGGTCACTTATCCTCGTTAATGGAGTTTGTAGAATCGCAGATACCTCCACCAACATATGAACAGTTGTTTCCATCTCAATATAACAAGTCCGATCCAGAAGCAGATGACAATGACCACTTGTTGTGCCAAATACGTTCATGTAAGGGTTTCTTCTTTGTGATGCTATCGCTGTTGGTCCCTGGAGTTGCAATTACGACAATTGGTTATGTCCGCCCTTGGTCATTTAAGTTTGGGATCCCAGCCACATTTACCGTGGTATCAGTACTTATTTTCATATCTGGTTTATCTTCATATGAACGCCCTAAACCAGACTCGAGCATTCTTTCTCGAGTTTTCAGGAAATTAGATACAAAAAGCATCACATGGTTGATTCCCTTATGCATGAACTTTGTCCTAATAGGTGTTGTGTCTTCGATTGGAAGTACTTTCTTCATCGAACAAGCAACCGATTTGAACCCCTACATTGGGAAGTTATTGATTCCTATTCTTATTCTCCCAGCTTTGCAAGAGTTGCCCAAAAAAATTTGTGCACCGATAATAGAAGGGTTTGCCAACCTTCCTGATTTGTCAGTTTTGGTGTCAATAATATTTGCCGTTCTAAGTTGTATAACAGCTGCAAAAGTGGAGACCCGAAGGTTAGGCATGGTTAATAGCCAAGGTGTACTTGACGAGCCTGAGAAAAGAATTCCCATGAGCATGTTTTGGTTGGTTCCACAGTTTGTTCTGCTTGGTTTGGCAGAAGATCTTGCAGAGAAAACTCTTCAAAATGTCTTCGTAATTCAGGTGGAACCCCGAACCCTTGGTGATGCTGTTCCAGCATTCTTTATTGGTTTAAAAATATTCCTTAAACTAGACATCGATGATGACGAGGAAACCAAAGAGTCCAATCGAAAGATTATGGTACGCTTTAAAGAAACTATGAGATCGAAGCGTGCTTATAAGGAAAGTTTAGCTCAGGCAGTTAAAGGAGTCGGAATCATATGCGGTGTGTTGTCAGTTTATCTAGTGGGTAAGATAAGTGCAAGAGGAGGGAAACCTAGTTGGTTTCAGTACACCATAAACAGGAGCCGTTTGGATAATTACTACTGGACGTTGGCTGCATTAAGCGCTGCTAATCTCTTTTATTTTGTTTTCCTGATGTGTAAATATCCCCAAGATCCGGAACTACTTCGATACCAACAAGAATGTCGGGAGCATGGAAAACTGATGCAAGGAGTTGAGGAACTTGGAAACCCTGATTCAGTACCGGATGATGTAAAAGCTAAGTGGACTGCTACTTATAATCAGATGGCTACAGAGCACCCCGATTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

479

Amino Acids

53.55

Weight (kDa)

5.96

Isoelectric Point (pI)

39.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 24 - 157 2.5e-06 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1065, 1407
AccIII TCCGGA 1 cut(s) 1285
AciI CCGC 2 cut(s) 337, 1110
AclWI GGATC 4 cut(s) 212, 355, 368, 1277
AcoI YGGCCR 1 cut(s) 67
AcsI RAATTY 3 cut(s) 81, 648, 810
AfaI GTAC 6 cut(s) 390, 550, 789, 1029, 1178, 1371
AfeI AGCGCT 1 cut(s) 1234
AfiI CCNNNNNNNGG 4 cut(s) 590, 591, 1188, 1285
AgeI ACCGGT 1 cut(s) 13
AgsI TTSAA 3 cut(s) 77, 580, 890
AjnI CCWGG 1 cut(s) 304
AloI GAACNNNNNNTCC 2 cut(s) 28, 60
AluBI AGCT 5 cut(s) 113, 626, 740, 1079, 1388
AluI AGCT 5 cut(s) 113, 626, 740, 1079, 1388
Alw21I GWGCWC 2 cut(s) 658, 1428
Alw26I GTCTC 1 cut(s) 746
Alw44I GTGCAC 1 cut(s) 654
AlwI GGATC 4 cut(s) 212, 355, 368, 1277
Ama87I CYCGRG 2 cut(s) 439, 453
Aor13HI TCCGGA 1 cut(s) 1285
Aor51HI AGCGCT 1 cut(s) 1234
AoxI GGCC 1 cut(s) 67
ApaLI GTGCAC 1 cut(s) 654
ApeKI GCWGC 3 cut(s) 740, 1223, 1235
ApoI RAATTY 3 cut(s) 81, 648, 810
AsiGI ACCGGT 1 cut(s) 13
Asp700I GAANNNNTTC 1 cut(s) 1293
AspLEI GCGC 1 cut(s) 1235
AspS9I GGNCC 2 cut(s) 16, 301
AsuHPI GGTGA 1 cut(s) 941
AvaI CYCGRG 2 cut(s) 439, 453
AvaII GGWCC 2 cut(s) 16, 301
BaeGI GKGCMC 1 cut(s) 658
BaeI ACNNNNGTAYC 2 cut(s) 366, 399
BalI TGGCCA 1 cut(s) 69
BamHI GGATCC 1 cut(s) 360
BbsI GAAGAC 2 cut(s) 528, 889
Bbv12I GWGCWC 2 cut(s) 658, 1428
BbvI GCAGC 3 cut(s) 727, 1210, 1222
BccI CCATC 3 cut(s) 47, 205, 1408
BceAI ACGGC 2 cut(s) 704, 1179
BciT130I CCWGG 1 cut(s) 306
BcoDI GTCTC 1 cut(s) 746
BfaI CTAG 3 cut(s) 977, 1130, 1164
BfmI CTRYAG 1 cut(s) 1419
BfoI RGCGCY 1 cut(s) 1236
BglII AGATCT 1 cut(s) 868
BisI GCNGC 3 cut(s) 741, 1224, 1236
BlsI GCNGC 3 cut(s) 742, 1225, 1237
BmcAI AGTACT 2 cut(s) 390, 550
Bme1390I CCNGG 1 cut(s) 306
Bme18I GGWCC 2 cut(s) 16, 301
BmeT110I CYCGRG 2 cut(s) 439, 453
BmgT120I GGNCC 2 cut(s) 16, 301
BmiI GGNNCC 5 cut(s) 303, 362, 837, 915, 1193
BmrFI CCNGG 1 cut(s) 306
BmsI GCATC 4 cut(s) 276, 492, 922, 1323
BpiI GAAGAC 2 cut(s) 528, 889
BpmI CTGGAG 1 cut(s) 327
Bpu10I CCTNAGC 1 cut(s) 1080
Bsa29I ATCGAT 1 cut(s) 984
BsaI GGTCTC 1 cut(s) 746
BsaJI CCNNGG 5 cut(s) 304, 341, 378, 781, 925
BsaWI WCCGGW 4 cut(s) 13, 125, 1285, 1372
Bsc4I CCNNNNNNNGG 4 cut(s) 590, 591, 1188, 1285
Bse118I RCCGGY 1 cut(s) 13
Bse1I ACTGG 1 cut(s) 1217
BseAI TCCGGA 1 cut(s) 1285
BseBI CCWGG 1 cut(s) 306
BseCI ATCGAT 1 cut(s) 984
BseDI CCNNGG 5 cut(s) 304, 341, 378, 781, 925
BseGI GGATG 1 cut(s) 1381
BseLI CCNNNNNNNGG 4 cut(s) 590, 591, 1188, 1285
BseMII CTCAG 2 cut(s) 792, 1094
BseNI ACTGG 1 cut(s) 1217
BseRI GAGGAG 1 cut(s) 1167
BseSI GKGCMC 1 cut(s) 658
BseXI GCAGC 3 cut(s) 727, 1210, 1222
BseYI CCCAGC 2 cut(s) 364, 622
BshFI GGCC 1 cut(s) 69
BshTI ACCGGT 1 cut(s) 13
BshVI ATCGAT 1 cut(s) 984
BsiHKAI GWGCWC 2 cut(s) 658, 1428
BsiHKCI CYCGRG 2 cut(s) 439, 453
BsiSI CCGG 4 cut(s) 14, 126, 1286, 1373
BslFI GGGAC 2 cut(s) 49, 287
BslI CCNNNNNNNGG 4 cut(s) 590, 591, 1188, 1285
BsmAI GTCTC 1 cut(s) 746
BsmFI GGGAC 2 cut(s) 49, 287
BsmI GAATGC 2 cut(s) 444, 944
BsnI GGCC 1 cut(s) 69
Bso31I GGTCTC 1 cut(s) 746
BsoBI CYCGRG 2 cut(s) 439, 453
Bsp1286I GDGCHC 2 cut(s) 658, 1428
Bsp13I TCCGGA 1 cut(s) 1285
Bsp143I GATC 5 cut(s) 217, 360, 868, 1049, 1282
BspACI CCGC 2 cut(s) 337, 1110
BspANI GGCC 1 cut(s) 69
BspCNI CTCAG 2 cut(s) 793, 1093
BspDI ATCGAT 1 cut(s) 984
BspEI TCCGGA 1 cut(s) 1285
BspLI GGNNCC 5 cut(s) 303, 362, 837, 915, 1193
BspPI GGATC 4 cut(s) 212, 355, 368, 1277
BspTNI GGTCTC 1 cut(s) 746
BsrFI RCCGGY 1 cut(s) 13
BsrI ACTGG 1 cut(s) 1217
BssAI RCCGGY 1 cut(s) 13
BssECI CCNNGG 5 cut(s) 304, 341, 378, 781, 925
BssMI GATC 5 cut(s) 217, 360, 868, 1049, 1282
BssT1I CCWWGG 3 cut(s) 341, 781, 925
Bst2UI CCWGG 1 cut(s) 306
Bst4CI ACNGT 3 cut(s) 189, 379, 843
Bst6I CTCTTC 1 cut(s) 891
BstAPI GCANNNNNTGC 1 cut(s) 637
BstC8I GCNNGC 1 cut(s) 1059
BstDEI CTNAG 4 cut(s) 725, 801, 1080, 1389
BstDSI CCRYGG 1 cut(s) 378
BstF5I GGATG 1 cut(s) 1381
BstH2I RGCGCY 1 cut(s) 1236
BstHHI GCGC 1 cut(s) 1235
BstKTI GATC 5 cut(s) 220, 363, 871, 1052, 1285
BstMAI GTCTC 1 cut(s) 746
BstMBI GATC 5 cut(s) 217, 360, 868, 1049, 1282
BstMWI GCNNNNNNNGC 3 cut(s) 637, 941, 1232
BstNI CCWGG 1 cut(s) 306
BstNSI RCATGY 1 cut(s) 826
BstSCI CCNGG 1 cut(s) 304
BstSFI CTRYAG 1 cut(s) 1419
BstSLI GKGCMC 1 cut(s) 658
BstV1I GCAGC 3 cut(s) 727, 1210, 1222
BstV2I GAAGAC 2 cut(s) 528, 889
BstX2I RGATCY 3 cut(s) 360, 868, 1282
BstYI RGATCY 3 cut(s) 360, 868, 1282
Bsu15I ATCGAT 1 cut(s) 984
BsuRI GGCC 1 cut(s) 69
BsuTUI ATCGAT 1 cut(s) 984
BtgI CCRYGG 1 cut(s) 378
BtsCI GGATG 1 cut(s) 1381
Cac8I GCNNGC 1 cut(s) 1059
CfoI GCGC 1 cut(s) 1235
Cfr10I RCCGGY 1 cut(s) 13
Cfr13I GGNCC 2 cut(s) 16, 301
ClaI ATCGAT 1 cut(s) 984
Csp6I GTAC 6 cut(s) 389, 549, 788, 1028, 1177, 1370
CspAI ACCGGT 1 cut(s) 13
CviAII CATG 7 cut(s) 264, 489, 508, 769, 817, 823, 1322
CviQI GTAC 6 cut(s) 389, 549, 788, 1028, 1177, 1370
DdeI CTNAG 4 cut(s) 725, 801, 1080, 1389
DpnI GATC 5 cut(s) 219, 362, 870, 1051, 1284
DpnII GATC 5 cut(s) 217, 360, 868, 1049, 1282
DraI TTTAAA 2 cut(s) 960, 1036
EaeI YGGCCR 1 cut(s) 67
Eam1104I CTCTTC 1 cut(s) 891
EarI CTCTTC 1 cut(s) 891
EciI GGCGGA 1 cut(s) 326
Eco130I CCWWGG 3 cut(s) 341, 781, 925
Eco31I GGTCTC 1 cut(s) 746
Eco47I GGWCC 2 cut(s) 16, 301
Eco47III AGCGCT 1 cut(s) 1234
Eco88I CYCGRG 2 cut(s) 439, 453
EcoRI GAATTC 2 cut(s) 81, 810
EcoRII CCWGG 1 cut(s) 304
EcoT14I CCWWGG 3 cut(s) 341, 781, 925
EcoT22I ATGCAT 1 cut(s) 509
ErhI CCWWGG 3 cut(s) 341, 781, 925
FaeI CATG 7 cut(s) 267, 492, 511, 772, 820, 826, 1325
FalI AAGNNNNNCTT 4 cut(s) 260, 292, 774, 806
FaqI GGGAC 2 cut(s) 49, 287
FatI CATG 7 cut(s) 263, 488, 507, 768, 816, 822, 1321
FauNDI CATATG 3 cut(s) 181, 418, 1106
Fnu4HI GCNGC 3 cut(s) 741, 1224, 1236
FokI GGATG 1 cut(s) 1388
Fsp4HI GCNGC 3 cut(s) 741, 1224, 1236
FspBI CTAG 3 cut(s) 977, 1130, 1164
GlaI GCGC 1 cut(s) 1234
GluI GCNGC 3 cut(s) 741, 1224, 1236
GsaI CCCAGC 2 cut(s) 368, 626
GsuI CTGGAG 1 cut(s) 327
HaeII RGCGCY 1 cut(s) 1236
HaeIII GGCC 1 cut(s) 69
HapII CCGG 4 cut(s) 14, 126, 1286, 1373
HhaI GCGC 1 cut(s) 1235
Hin1II CATG 7 cut(s) 267, 492, 511, 772, 820, 826, 1325
Hin6I GCGC 1 cut(s) 1233
HinP1I GCGC 1 cut(s) 1233
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 8 cut(s) 158, 437, 496, 604, 1007, 1095, 1101, 1364
HpaII CCGG 4 cut(s) 14, 126, 1286, 1373
HphI GGTGA 1 cut(s) 941
Hpy166II GTNNAC 5 cut(s) 6, 656, 788, 1179, 1395
Hpy188I TCNGA 3 cut(s) 217, 1100, 1413
Hpy188III TCNNGA 7 cut(s) 221, 453, 463, 686, 1261, 1286, 1316
Hpy8I GTNNAC 5 cut(s) 6, 656, 788, 1179, 1395
HpyAV CCTTC 3 cut(s) 662, 692, 753
HpyCH4III ACNGT 3 cut(s) 189, 379, 843
HpyCH4IV ACGT 2 cut(s) 259, 1217
HpyF10VI GCNNNNNNNGC 3 cut(s) 637, 941, 1232
HpyF3I CTNAG 4 cut(s) 725, 801, 1080, 1389
HpySE526I ACGT 2 cut(s) 259, 1217
Hsp92II CATG 7 cut(s) 267, 492, 511, 772, 820, 826, 1325
HspAI GCGC 1 cut(s) 1233
Kpn2I TCCGGA 1 cut(s) 1285
Kzo9I GATC 5 cut(s) 217, 360, 868, 1049, 1282
LmnI GCTCC 2 cut(s) 1191, 1318
Lsp1109I GCAGC 3 cut(s) 727, 1210, 1222
LweI GCATC 4 cut(s) 276, 492, 922, 1323
MaeI CTAG 3 cut(s) 977, 1130, 1164
MaeII ACGT 2 cut(s) 259, 1217
MaeIII GTNAC 1 cut(s) 128
MalI GATC 5 cut(s) 219, 362, 870, 1051, 1284
MboI GATC 5 cut(s) 217, 360, 868, 1049, 1282
MboII GAAGA 7 cut(s) 268, 405, 528, 547, 878, 878, 889
MfeI CAATTG 1 cut(s) 324
MflI RGATCY 3 cut(s) 360, 868, 1282
MhlI GDGCHC 2 cut(s) 658, 1428
MlsI TGGCCA 1 cut(s) 69
MluCI AATT 8 cut(s) 81, 315, 324, 467, 648, 810, 903, 1204
MluNI TGGCCA 1 cut(s) 69
MlyI GAGTC 3 cut(s) 431, 1016, 1104
MmeI TCCRAC 1 cut(s) 1078
MnlI CCTC 7 cut(s) 114, 148, 180, 988, 1145, 1148, 1339
Mox20I TGGCCA 1 cut(s) 69
Mph1103I ATGCAT 1 cut(s) 509
MroI TCCGGA 1 cut(s) 1285
MroXI GAANNNNTTC 1 cut(s) 1293
MscI TGGCCA 1 cut(s) 69
MseI TTAA 8 cut(s) 143, 351, 774, 959, 972, 1035, 1089, 1229
MslI CAYNNNNRTG 1 cut(s) 821
Msp20I TGGCCA 1 cut(s) 69
MspA1I CMGCKG 1 cut(s) 740
MspI CCGG 4 cut(s) 14, 126, 1286, 1373
MspR9I CCNGG 1 cut(s) 306
MunI CAATTG 1 cut(s) 324
Mva1269I GAATGC 2 cut(s) 444, 944
MvaI CCWGG 1 cut(s) 306
MwoI GCNNNNNNNGC 3 cut(s) 637, 941, 1232
NdeI CATATG 3 cut(s) 181, 418, 1106
NdeII GATC 5 cut(s) 217, 360, 868, 1049, 1282
NlaIII CATG 7 cut(s) 267, 492, 511, 772, 820, 826, 1325
NlaIV GGNNCC 5 cut(s) 303, 362, 837, 915, 1193
NmuCI GTSAC 1 cut(s) 128
NsiI ATGCAT 1 cut(s) 509
NspI RCATGY 1 cut(s) 826
PaeR7I CTCGAG 2 cut(s) 439, 453
PcsI WCGNNNNNNNCGW 1 cut(s) 990
PctI GAATGC 2 cut(s) 444, 944
PdmI GAANNNNTTC 1 cut(s) 1293
PfeI GAWTC 5 cut(s) 158, 496, 604, 1101, 1364
PinAI ACCGGT 1 cut(s) 13
PkrI GCNGC 3 cut(s) 742, 1225, 1237
PleI GAGTC 3 cut(s) 431, 1015, 1103
PpsI GAGTC 3 cut(s) 431, 1015, 1103
PsiI TTATAA 2 cut(s) 1065, 1407
Psp6I CCWGG 1 cut(s) 304
PspFI CCCAGC 2 cut(s) 364, 622
PspGI CCWGG 1 cut(s) 304
PspN4I GGNNCC 5 cut(s) 303, 362, 837, 915, 1193
PspPI GGNCC 2 cut(s) 16, 301
PspXI VCTCGAGB 1 cut(s) 439
PsuI RGATCY 3 cut(s) 360, 868, 1282
PvuII CAGCTG 1 cut(s) 740
RsaI GTAC 6 cut(s) 390, 550, 789, 1029, 1178, 1371
RsaNI GTAC 6 cut(s) 389, 549, 788, 1028, 1177, 1370
RseI CAYNNNNRTG 1 cut(s) 821
SaqAI TTAA 8 cut(s) 143, 351, 774, 959, 972, 1035, 1089, 1229
SatI GCNGC 3 cut(s) 741, 1224, 1236
Sau3AI GATC 5 cut(s) 217, 360, 868, 1049, 1282
Sau96I GGNCC 2 cut(s) 16, 301
ScaI AGTACT 2 cut(s) 390, 550
SchI GAGTC 3 cut(s) 431, 1016, 1104
ScrFI CCNGG 1 cut(s) 306
SduI GDGCHC 2 cut(s) 658, 1428
SfaNI GCATC 4 cut(s) 276, 492, 922, 1323
SfcI CTRYAG 1 cut(s) 1419
Sfr274I CTCGAG 2 cut(s) 439, 453
SinI GGWCC 2 cut(s) 16, 301
SlaI CTCGAG 2 cut(s) 439, 453
SmiMI CAYNNNNRTG 1 cut(s) 821
SmlI CTYRAG 2 cut(s) 439, 453
SmoI CTYRAG 2 cut(s) 439, 453
Sse9I AATT 8 cut(s) 81, 315, 324, 467, 648, 810, 903, 1204
SsiI CCGC 2 cut(s) 337, 1110
SspI AATATT 2 cut(s) 714, 966
SspMI CTAG 3 cut(s) 977, 1130, 1164
StyD4I CCNGG 1 cut(s) 304
StyI CCWWGG 3 cut(s) 341, 781, 925
TaaI ACNGT 3 cut(s) 189, 379, 843
TaiI ACGT 2 cut(s) 262, 1220
TaqI TCGA 8 cut(s) 440, 454, 539, 561, 984, 1015, 1052, 1297
TasI AATT 8 cut(s) 81, 315, 324, 467, 648, 810, 903, 1204
TatI WGTACW 4 cut(s) 388, 548, 787, 1176
TfiI GAWTC 5 cut(s) 158, 496, 604, 1101, 1364
Tru1I TTAA 8 cut(s) 143, 351, 774, 959, 972, 1035, 1089, 1229
Tru9I TTAA 8 cut(s) 143, 351, 774, 959, 972, 1035, 1089, 1229
TseFI GTSAC 1 cut(s) 128
TseI GCWGC 3 cut(s) 740, 1223, 1235
Tsp45I GTSAC 1 cut(s) 128
TspDTI ATGAA 8 cut(s) 36, 198, 252, 388, 405, 435, 524, 547
VneI GTGCAC 1 cut(s) 654
VpaK11BI GGWCC 2 cut(s) 16, 301
XapI RAATTY 3 cut(s) 81, 648, 810
XceI RCATGY 1 cut(s) 826
XcmI CCANNNNNNNNNTGG 1 cut(s) 376
XhoI CTCGAG 2 cut(s) 439, 453
XmnI GAANNNNTTC 1 cut(s) 1293
XspI CTAG 3 cut(s) 977, 1130, 1164
ZrmI AGTACT 2 cut(s) 390, 550
Zsp2I ATGCAT 1 cut(s) 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.