Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003722

Physical Location & Seq

Genomic Coordinates Reverse (-)

24134546 .. 24135016

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0257500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGACAAACAACTTCCCTCTCTCCAATTTGCCCGCCGGCAGACCACCACCACAAATCTTGCCCTTCGAGCTCATCACCCCAGAGATACCCAATCAATACCGCAAGCCACACGGATCCACCTGCCTGTCGTCGGCCGGATCCAGATCTGGAAACAAATCCACTCCAATCCAAACCACCGAGAAACAAGAAGGGAATCGCCGTGCCCTTCCACCTCGGAACGAAATCGCTCCACCCATCTGTGTCCATCCGCCCGGGAGCCCGAACCCACCGCTGCGAACATCGCCGAGCGACCAACCTCTGAACAGAGATCAGCGCCATACGATCCATGGCATGCCGCCGCCACGATCTGGCCTCTGGCCCCTTGCTCCAAGCCTGCGCCGCCGCCGAATTCCCCCTCCCCGCCTGCGCCTCTGCCTGAGAGTAGAGAAGAAGCATGCAAAGCCTCGACCAACGCAAAGAAGACAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

156

Amino Acids

17.52

Weight (kDa)

11.74

Isoelectric Point (pI)

86.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09960 AT4G09960 AT4G09960 AT4G09960 AT4G09960 AT4G09960
fragaria_vesca	FvH4_5g32540 FvH4_5g32540
malus_domestica	MD08G1216500.v1.1 MD15G1403600.v1.1
prunus_persica	Prupe.1G549600_v2.0.a1 Prupe.1G549600_v2.0.a1 Prupe.1G549600_v2.0.a1
pyrus_communis	pycom08g18740 pycom15g36090
rosa_chinensis	RchiOBHm_Chr7g0229221
rosa_laevigata	RLG00000001521
rosa_roxburghii	Rroxscaffold_3G00230530
rosa_rugosa	Rorug07G0256700 Rorug07G0256800 Rorug07G0256900 Rorug07G0256900 Rorug07G0256900 Rorug07G0256900 Rorug07G0257000 Rorug07G0257100 Rorug07G0257100 Rorug07G0257400 Rorug07G0257500 Rorug07G0257600 Rorug07G0257800
rosa_samantha	Rh7BG387100 Rh7CG426500
rosa_wichuraiana	Rw0G001920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	128
Acc36I	ACCTGC	1 cut(s)	128
AccB7I	CCANNNNNTGG	1 cut(s)	347
AciI	CCGC	9 cut(s)	33, 100, 248, 269, 335, 338, 379, 382, 400
AclWI	GGATC	5 cut(s)	108, 121, 132, 145, 316
AcoI	YGGCCR	1 cut(s)	132
AcsI	RAATTY	1 cut(s)	387
AfiI	CCNNNNNNNGG	2 cut(s)	130, 347
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
Alw21I	GWGCWC	1 cut(s)	72
AlwI	GGATC	5 cut(s)	108, 121, 132, 145, 316
Ama87I	CYCGRG	1 cut(s)	251
AoxI	GGCC	3 cut(s)	132, 349, 356
ApeKI	GCWGC	1 cut(s)	271
ApoI	RAATTY	1 cut(s)	387
AspLEI	GCGC	3 cut(s)	315, 378, 408
AspS9I	GGNCC	1 cut(s)	357
AsuC2I	CCSGG	2 cut(s)	252, 253
AsuHPI	GGTGA	1 cut(s)	67
AvaI	CYCGRG	1 cut(s)	251
BaeGI	GKGCMC	1 cut(s)	205
BamHI	GGATCC	2 cut(s)	113, 137
BanII	GRGCYC	2 cut(s)	72, 260
BbsI	GAAGAC	1 cut(s)	466
Bbv12I	GWGCWC	1 cut(s)	72
BbvI	GCAGC	1 cut(s)	258
BccI	CCATC	2 cut(s)	242, 252
BceAI	ACGGC	1 cut(s)	183
BcnI	CCSGG	2 cut(s)	252, 253
BfoI	RGCGCY	1 cut(s)	316
BfuAI	ACCTGC	1 cut(s)	128
BglII	AGATCT	1 cut(s)	143
BisI	GCNGC	5 cut(s)	272, 335, 338, 379, 382
BlsI	GCNGC	5 cut(s)	273, 336, 339, 380, 383
Bme1390I	CCNGG	2 cut(s)	252, 253
BmeT110I	CYCGRG	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	357
BmiI	GGNNCC	4 cut(s)	115, 139, 257, 359
BmrFI	CCNGG	2 cut(s)	252, 253
BpiI	GAAGAC	1 cut(s)	466
BpuMI	CCSGG	2 cut(s)	252, 253
BsaBI	GATNNNNATC	1 cut(s)	142
BsaJI	CCNNGG	3 cut(s)	212, 251, 325
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 347
Bse118I	RCCGGY	1 cut(s)	35
Bse8I	GATNNNNATC	1 cut(s)	142
BseDI	CCNNGG	3 cut(s)	212, 251, 325
BseGI	GGATG	1 cut(s)	244
BseJI	GATNNNNATC	1 cut(s)	142
BseLI	CCNNNNNNNGG	2 cut(s)	130, 347
BseMII	CTCAG	1 cut(s)	407
BseSI	GKGCMC	1 cut(s)	205
BseX3I	CGGCCG	1 cut(s)	132
BseXI	GCAGC	1 cut(s)	258
Bsh1285I	CGRYCG	1 cut(s)	135
BshFI	GGCC	3 cut(s)	134, 351, 358
BsiEI	CGRYCG	1 cut(s)	135
BsiHKAI	GWGCWC	1 cut(s)	72
BsiHKCI	CYCGRG	1 cut(s)	251
BsiSI	CCGG	3 cut(s)	36, 135, 252
BslI	CCNNNNNNNGG	2 cut(s)	130, 347
BsnI	GGCC	3 cut(s)	134, 351, 358
BsoBI	CYCGRG	1 cut(s)	251
Bsp1286I	GDGCHC	3 cut(s)	72, 205, 260
Bsp143I	GATC	6 cut(s)	113, 137, 143, 307, 321, 344
Bsp19I	CCATGG	1 cut(s)	325
BspACI	CCGC	9 cut(s)	33, 100, 248, 269, 335, 338, 379, 382, 400
BspANI	GGCC	3 cut(s)	134, 351, 358
BspCNI	CTCAG	1 cut(s)	408
BspLI	GGNNCC	4 cut(s)	115, 139, 257, 359
BspMI	ACCTGC	1 cut(s)	128
BspPI	GGATC	5 cut(s)	108, 121, 132, 145, 316
BsrFI	RCCGGY	1 cut(s)	35
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	3 cut(s)	212, 251, 325
BssMI	GATC	6 cut(s)	113, 137, 143, 307, 321, 344
BssT1I	CCWWGG	1 cut(s)	325
BstC8I	GCNNGC	7 cut(s)	33, 37, 104, 332, 374, 404, 435
BstDEI	CTNAG	1 cut(s)	416
BstDSI	CCRYGG	1 cut(s)	325
BstF5I	GGATG	1 cut(s)	244
BstH2I	RGCGCY	1 cut(s)	316
BstHHI	GCGC	3 cut(s)	315, 378, 408
BstKTI	GATC	6 cut(s)	116, 140, 146, 310, 324, 347
BstMBI	GATC	6 cut(s)	113, 137, 143, 307, 321, 344
BstMCI	CGRYCG	1 cut(s)	135
BstMWI	GCNNNNNNNGC	4 cut(s)	67, 280, 378, 439
BstNSI	RCATGY	2 cut(s)	334, 437
BstSCI	CCNGG	2 cut(s)	250, 251
BstSLI	GKGCMC	1 cut(s)	205
BstV1I	GCAGC	1 cut(s)	258
BstV2I	GAAGAC	1 cut(s)	466
BstX2I	RGATCY	3 cut(s)	113, 137, 143
BstYI	RGATCY	3 cut(s)	113, 137, 143
BstZI	CGGCCG	1 cut(s)	132
BsuRI	GGCC	3 cut(s)	134, 351, 358
BtgI	CCRYGG	1 cut(s)	325
BtgZI	GCGATG	1 cut(s)	264
BtsCI	GGATG	1 cut(s)	244
BveI	ACCTGC	1 cut(s)	128
Cac8I	GCNNGC	7 cut(s)	33, 37, 104, 332, 374, 404, 435
CfoI	GCGC	3 cut(s)	315, 378, 408
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	357
Cfr9I	CCCGGG	1 cut(s)	251
CspCI	CAANNNNNGTGG	2 cut(s)	39, 74
CviAII	CATG	3 cut(s)	326, 331, 434
CviJI	RGCY	8 cut(s)	70, 106, 134, 258, 351, 358, 372, 442
CviKI_1	RGCY	8 cut(s)	70, 106, 134, 258, 351, 358, 372, 442
DdeI	CTNAG	1 cut(s)	416
DpnI	GATC	6 cut(s)	115, 139, 145, 309, 323, 346
DpnII	GATC	6 cut(s)	113, 137, 143, 307, 321, 344
EaeI	YGGCCR	1 cut(s)	132
EagI	CGGCCG	1 cut(s)	132
EciI	GGCGGA	1 cut(s)	237
Ecl136II	GAGCTC	1 cut(s)	70
EclXI	CGGCCG	1 cut(s)	132
Eco130I	CCWWGG	1 cut(s)	325
Eco24I	GRGCYC	2 cut(s)	72, 260
Eco52I	CGGCCG	1 cut(s)	132
Eco53kI	GAGCTC	1 cut(s)	70
Eco88I	CYCGRG	1 cut(s)	251
EcoICRI	GAGCTC	1 cut(s)	70
EcoRI	GAATTC	1 cut(s)	387
EcoT14I	CCWWGG	1 cut(s)	325
EcoT38I	GRGCYC	2 cut(s)	72, 260
ErhI	CCWWGG	1 cut(s)	325
FaeI	CATG	3 cut(s)	329, 334, 437
FaiI	YATR	4 cut(s)	318, 327, 332, 435
FatI	CATG	3 cut(s)	325, 330, 433
FauI	CCCGC	2 cut(s)	40, 407
Fnu4HI	GCNGC	5 cut(s)	272, 335, 338, 379, 382
FokI	GGATG	1 cut(s)	231
FriOI	GRGCYC	2 cut(s)	72, 260
Fsp4HI	GCNGC	5 cut(s)	272, 335, 338, 379, 382
GlaI	GCGC	3 cut(s)	314, 377, 407
GluI	GCNGC	5 cut(s)	272, 335, 338, 379, 382
HaeII	RGCGCY	1 cut(s)	316
HaeIII	GGCC	3 cut(s)	134, 351, 358
HapII	CCGG	3 cut(s)	36, 135, 252
HhaI	GCGC	3 cut(s)	315, 378, 408
Hin1II	CATG	3 cut(s)	329, 334, 437
Hin6I	GCGC	3 cut(s)	313, 376, 406
HinP1I	GCGC	3 cut(s)	313, 376, 406
HinfI	GANTC	1 cut(s)	193
HpaII	CCGG	3 cut(s)	36, 135, 252
HphI	GGTGA	1 cut(s)	67
Hpy188I	TCNGA	2 cut(s)	216, 300
Hpy188III	TCNNGA	2 cut(s)	141, 147
Hpy99I	CGWCG	1 cut(s)	133
HpyAV	CCTTC	3 cut(s)	73, 182, 215
HpyCH4V	TGCA	1 cut(s)	437
HpyF10VI	GCNNNNNNNGC	4 cut(s)	67, 280, 378, 439
HpyF3I	CTNAG	1 cut(s)	416
Hsp92II	CATG	3 cut(s)	329, 334, 437
HspAI	GCGC	3 cut(s)	313, 376, 406
KroI	GCCGGC	1 cut(s)	35
KroNI	GCCGGC	1 cut(s)	37
Kzo9I	GATC	6 cut(s)	113, 137, 143, 307, 321, 344
LmnI	GCTCC	3 cut(s)	232, 255, 370
Lsp1109I	GCAGC	1 cut(s)	258
MalI	GATC	6 cut(s)	115, 139, 145, 309, 323, 346
MboI	GATC	6 cut(s)	113, 137, 143, 307, 321, 344
MboII	GAAGA	2 cut(s)	439, 471
MflI	RGATCY	3 cut(s)	113, 137, 143
MhlI	GDGCHC	3 cut(s)	72, 205, 260
MluCI	AATT	3 cut(s)	25, 387, 466
MnlI	CCTC	7 cut(s)	27, 222, 306, 362, 405, 419, 453
MroNI	GCCGGC	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	271
MspI	CCGG	3 cut(s)	36, 135, 252
MspR9I	CCNGG	2 cut(s)	252, 253
MwoI	GCNNNNNNNGC	4 cut(s)	67, 280, 378, 439
NaeI	GCCGGC	1 cut(s)	37
NciI	CCSGG	2 cut(s)	252, 253
NcoI	CCATGG	1 cut(s)	325
NdeII	GATC	6 cut(s)	113, 137, 143, 307, 321, 344
NgoMIV	GCCGGC	1 cut(s)	35
NlaIII	CATG	3 cut(s)	329, 334, 437
NlaIV	GGNNCC	4 cut(s)	115, 139, 257, 359
NmeAIII	GCCGAG	1 cut(s)	309
NspI	RCATGY	2 cut(s)	334, 437
PaeI	GCATGC	2 cut(s)	334, 437
PaqCI	CACCTGC	1 cut(s)	128
PdiI	GCCGGC	1 cut(s)	37
PfeI	GAWTC	1 cut(s)	193
PflMI	CCANNNNNTGG	1 cut(s)	347
PkrI	GCNGC	5 cut(s)	273, 336, 339, 380, 383
Psp124BI	GAGCTC	1 cut(s)	72
PspN4I	GGNNCC	4 cut(s)	115, 139, 257, 359
PspPI	GGNCC	1 cut(s)	357
PsuI	RGATCY	3 cut(s)	113, 137, 143
SacI	GAGCTC	1 cut(s)	72
SatI	GCNGC	5 cut(s)	272, 335, 338, 379, 382
Sau3AI	GATC	6 cut(s)	113, 137, 143, 307, 321, 344
Sau96I	GGNCC	1 cut(s)	357
ScrFI	CCNGG	2 cut(s)	252, 253
SduI	GDGCHC	3 cut(s)	72, 205, 260
SetI	ASST	4 cut(s)	72, 122, 214, 298
SmaI	CCCGGG	1 cut(s)	253
SphI	GCATGC	2 cut(s)	334, 437
Sse9I	AATT	3 cut(s)	25, 387, 466
SsiI	CCGC	9 cut(s)	33, 100, 248, 269, 335, 338, 379, 382, 400
SstI	GAGCTC	1 cut(s)	72
StyD4I	CCNGG	2 cut(s)	250, 251
StyI	CCWWGG	1 cut(s)	325
TaqI	TCGA	2 cut(s)	66, 445
TasI	AATT	3 cut(s)	25, 387, 466
TauI	GCSGC	4 cut(s)	337, 340, 381, 384
TfiI	GAWTC	1 cut(s)	193
TseI	GCWGC	1 cut(s)	271
TspGWI	ACGGA	1 cut(s)	126
TspMI	CCCGGG	1 cut(s)	251
Van91I	CCANNNNNTGG	1 cut(s)	347
XapI	RAATTY	1 cut(s)	387
XceI	RCATGY	2 cut(s)	334, 437
XcmI	CCANNNNNNNNNTGG	1 cut(s)	323
XmaI	CCCGGG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.