FvH4_5g39000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0014755
Physical Location & Seq
Reverse (-)
28805430 .. 28806697
1268 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g39000.t1

Sequence Viewer

Length: 582 bp
ATGCTTTCAATTCAATCACACCTCACTGATCTCAGAATCATGGGCAATCAAGAGTTAGAGGAGAAGATGATTAATAACAATGACACAAAAGTGAGGCCTAACAACAAGGAAGTCATCATCACTGTCTATGTTGAATCAGATTCCCTCTCACATCATCCCTTTAAGAAGATTAATCCCAAGAAAATCTCCAGAAAGCCTCCTCAGACTGCGACAACACACATCTATGATCGTCGGGCTCATCTTCTTGCTTATGCTCAAGAGCTAAGAAAAAATGCTACTTCTCAACAGTTGCAGCGGCCTAAAAATGGCTCAAACTCAAAGCCTAAGCACAAGCCAAATAGAAATAGGTTCACAACTCCAGTGAGACTCCGGAGACCAAAGGGTGGCAGATGGAGGTATCAGCGATTAGTACCAGAAGTCGACATACCGTGCAGTTCCAAATGGAACAGTTACAGCAAAAGAAAGGCTACCGACTCAAAAAGGAATTCGAACATGATTAGGAAGTTGAGGTGTATGCTGAGAGGTTTGTGGGACTGCAACAAAGGGTCCCAAGTTGAACGGAAACATCATCAAGCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

22.7

Weight (kDa)

10.64

Isoelectric Point (pI)

55.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014755)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g39000
malus_domestica MD08G1172500.v1.1 MD15G1358100.v1.1
prunus_persica Prupe.1G505500_v2.0.a1
pyrus_communis pycom08g14730 pycom15g32040
rosa_laevigata RLG00000000610
rosa_multiflora Rmu_co7979250.1_g000001 Rmu_ssc0000392.1_g000008
rosa_roxburghii Rroxscaffold_3G00219370
rosa_rugosa Rorug07G0340900 Rorug07G0341000
rosa_samantha Rh7AG495700 Rh7BG467100 Rh7CG513200 Rh7DG480300
rosa_wichuraiana Rw7G041890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 383
AccI GTMKAC 1 cut(s) 420
AccIII TCCGGA 1 cut(s) 369
AciI CCGC 1 cut(s) 295
AcsI RAATTY 1 cut(s) 484
AfaI GTAC 1 cut(s) 411
AfiI CCNNNNNNNGG 2 cut(s) 305, 383
AgsI TTSAA 4 cut(s) 9, 14, 134, 557
AleI CACNNNNGTG 1 cut(s) 89
AluBI AGCT 2 cut(s) 262, 575
AluI AGCT 2 cut(s) 262, 575
Alw26I GTCTC 2 cut(s) 358, 367
Aor13HI TCCGGA 1 cut(s) 369
AoxI GGCC 2 cut(s) 95, 296
ApeKI GCWGC 1 cut(s) 292
ApoI RAATTY 1 cut(s) 484
AseI ATTAAT 2 cut(s) 72, 171
AspS9I GGNCC 1 cut(s) 546
AsuII TTCGAA 1 cut(s) 488
AvaII GGWCC 1 cut(s) 546
BanII GRGCYC 1 cut(s) 238
BarI GAAGNNNNNNTAC 2 cut(s) 408, 440
BbvI GCAGC 1 cut(s) 304
BccI CCATC 1 cut(s) 384
BcoDI GTCTC 2 cut(s) 358, 367
BisI GCNGC 2 cut(s) 293, 296
BlsI GCNGC 2 cut(s) 294, 297
Bme18I GGWCC 1 cut(s) 546
BmgT120I GGNCC 1 cut(s) 546
BmiI GGNNCC 2 cut(s) 547, 548
BpmI CTGGAG 2 cut(s) 172, 342
Bpu10I CCTNAGC 1 cut(s) 324
Bpu14I TTCGAA 1 cut(s) 488
BpuEI CTTGAG 1 cut(s) 240
BsaI GGTCTC 1 cut(s) 367
BsaWI WCCGGW 1 cut(s) 369
Bsc4I CCNNNNNNNGG 2 cut(s) 305, 383
Bse1I ACTGG 1 cut(s) 359
BseAI TCCGGA 1 cut(s) 369
BseGI GGATG 1 cut(s) 154
BseLI CCNNNNNNNGG 2 cut(s) 305, 383
BseMII CTCAG 3 cut(s) 46, 215, 509
BseNI ACTGG 1 cut(s) 359
BseRI GAGGAG 2 cut(s) 74, 189
BseXI GCAGC 1 cut(s) 304
BsgI GTGCAG 1 cut(s) 451
BshFI GGCC 2 cut(s) 97, 298
BsiSI CCGG 1 cut(s) 370
BslFI GGGAC 2 cut(s) 532, 545
BslI CCNNNNNNNGG 2 cut(s) 305, 383
BsmAI GTCTC 2 cut(s) 358, 367
BsmFI GGGAC 2 cut(s) 532, 545
BsnI GGCC 2 cut(s) 97, 298
Bso31I GGTCTC 1 cut(s) 367
Bsp119I TTCGAA 1 cut(s) 488
Bsp1286I GDGCHC 1 cut(s) 238
Bsp13I TCCGGA 1 cut(s) 369
Bsp143I GATC 2 cut(s) 28, 226
BspACI CCGC 1 cut(s) 295
BspANI GGCC 2 cut(s) 97, 298
BspCNI CTCAG 3 cut(s) 45, 214, 510
BspEI TCCGGA 1 cut(s) 369
BspLI GGNNCC 2 cut(s) 547, 548
BspT104I TTCGAA 1 cut(s) 488
BspTNI GGTCTC 1 cut(s) 367
BsrI ACTGG 1 cut(s) 359
BssMI GATC 2 cut(s) 28, 226
Bst4CI ACNGT 4 cut(s) 124, 288, 429, 449
BstBI TTCGAA 1 cut(s) 488
BstDEI CTNAG 5 cut(s) 32, 201, 263, 324, 518
BstF5I GGATG 1 cut(s) 154
BstKTI GATC 2 cut(s) 31, 229
BstMAI GTCTC 2 cut(s) 358, 367
BstMBI GATC 2 cut(s) 28, 226
BstV1I GCAGC 1 cut(s) 304
BsuRI GGCC 2 cut(s) 97, 298
BtsCI GGATG 1 cut(s) 154
BtsIMutI CAGTG 3 cut(s) 24, 120, 366
Cfr13I GGNCC 1 cut(s) 546
Csp6I GTAC 1 cut(s) 410
CviAII CATG 2 cut(s) 40, 493
CviQI GTAC 1 cut(s) 410
DdeI CTNAG 5 cut(s) 32, 201, 263, 324, 518
DpnI GATC 2 cut(s) 30, 228
DpnII GATC 2 cut(s) 28, 226
Eco147I AGGCCT 1 cut(s) 97
Eco24I GRGCYC 1 cut(s) 238
Eco31I GGTCTC 1 cut(s) 367
Eco47I GGWCC 1 cut(s) 546
EcoO109I RGGNCCY 1 cut(s) 546
EcoRI GAATTC 1 cut(s) 484
EcoT38I GRGCYC 1 cut(s) 238
FaeI CATG 2 cut(s) 43, 496
FaiI YATR 7 cut(s) 41, 129, 225, 252, 425, 494, 515
FaqI GGGAC 2 cut(s) 532, 545
FatI CATG 2 cut(s) 39, 492
FblI GTMKAC 1 cut(s) 420
Fnu4HI GCNGC 2 cut(s) 293, 296
FokI GGATG 1 cut(s) 141
FriOI GRGCYC 1 cut(s) 238
Fsp4HI GCNGC 2 cut(s) 293, 296
GluI GCNGC 2 cut(s) 293, 296
GsuI CTGGAG 2 cut(s) 172, 342
HaeIII GGCC 2 cut(s) 97, 298
HapII CCGG 1 cut(s) 370
Hin1II CATG 2 cut(s) 43, 496
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HinfI GANTC 5 cut(s) 36, 134, 140, 366, 473
HpaII CCGG 1 cut(s) 370
Hpy166II GTNNAC 2 cut(s) 351, 421
Hpy188I TCNGA 3 cut(s) 35, 139, 204
Hpy188III TCNNGA 4 cut(s) 50, 189, 257, 370
Hpy8I GTNNAC 2 cut(s) 351, 421
Hpy99I CGWCG 1 cut(s) 234
HpyCH4III ACNGT 4 cut(s) 124, 288, 429, 449
HpyCH4V TGCA 3 cut(s) 292, 432, 537
HpyF3I CTNAG 5 cut(s) 32, 201, 263, 324, 518
Hsp92II CATG 2 cut(s) 43, 496
KflI GGGWCCC 1 cut(s) 546
Kpn2I TCCGGA 1 cut(s) 369
Kzo9I GATC 2 cut(s) 28, 226
LpnPI CCDG 4 cut(s) 202, 372, 383, 426
Lsp1109I GCAGC 1 cut(s) 304
MaeIII GTNAC 1 cut(s) 449
MalI GATC 2 cut(s) 30, 228
MboI GATC 2 cut(s) 28, 226
MboII GAAGA 3 cut(s) 76, 178, 233
MhlI GDGCHC 1 cut(s) 238
MluCI AATT 2 cut(s) 9, 484
MlyI GAGTC 2 cut(s) 360, 467
MnlI CCTC 9 cut(s) 32, 52, 87, 155, 207, 210, 387, 501, 515
MroI TCCGGA 1 cut(s) 369
MseI TTAA 3 cut(s) 72, 162, 171
MslI CAYNNNNRTG 2 cut(s) 89, 222
MspA1I CMGCKG 1 cut(s) 295
MspI CCGG 1 cut(s) 370
NdeII GATC 2 cut(s) 28, 226
NlaIII CATG 2 cut(s) 43, 496
NlaIV GGNNCC 2 cut(s) 547, 548
NspV TTCGAA 1 cut(s) 488
OliI CACNNNNGTG 1 cut(s) 89
PceI AGGCCT 1 cut(s) 97
PfeI GAWTC 3 cut(s) 36, 134, 140
PflMI CCANNNNNTGG 1 cut(s) 383
PkrI GCNGC 2 cut(s) 294, 297
PleI GAGTC 2 cut(s) 360, 467
PpsI GAGTC 2 cut(s) 360, 467
PpuMI RGGWCCY 1 cut(s) 546
PshBI ATTAAT 2 cut(s) 72, 171
Psp5II RGGWCCY 1 cut(s) 546
PspN4I GGNNCC 2 cut(s) 547, 548
PspPI GGNCC 1 cut(s) 546
PspPPI RGGWCCY 1 cut(s) 546
RsaI GTAC 1 cut(s) 411
RsaNI GTAC 1 cut(s) 410
RseI CAYNNNNRTG 2 cut(s) 89, 222
SalI GTCGAC 1 cut(s) 419
SaqAI TTAA 3 cut(s) 72, 162, 171
SatI GCNGC 2 cut(s) 293, 296
Sau3AI GATC 2 cut(s) 28, 226
Sau96I GGNCC 1 cut(s) 546
SchI GAGTC 2 cut(s) 360, 467
SduI GDGCHC 1 cut(s) 238
SetI ASST 7 cut(s) 24, 264, 350, 398, 512, 526, 577
SfuI TTCGAA 1 cut(s) 488
SinI GGWCC 1 cut(s) 546
SmiMI CAYNNNNRTG 2 cut(s) 89, 222
SmlI CTYRAG 1 cut(s) 255
SmoI CTYRAG 1 cut(s) 255
Sse9I AATT 2 cut(s) 9, 484
SseBI AGGCCT 1 cut(s) 97
SsiI CCGC 1 cut(s) 295
StuI AGGCCT 1 cut(s) 97
TaaI ACNGT 4 cut(s) 124, 288, 429, 449
TaqI TCGA 2 cut(s) 420, 488
TasI AATT 2 cut(s) 9, 484
TauI GCSGC 1 cut(s) 298
TfiI GAWTC 3 cut(s) 36, 134, 140
Tru1I TTAA 3 cut(s) 72, 162, 171
Tru9I TTAA 3 cut(s) 72, 162, 171
TscAI CASTG 3 cut(s) 31, 127, 366
TseI GCWGC 1 cut(s) 292
TspGWI ACGGA 1 cut(s) 574
TspRI CASTG 3 cut(s) 31, 127, 366
Van91I CCANNNNNTGG 1 cut(s) 383
VpaK11BI GGWCC 1 cut(s) 546
VspI ATTAAT 2 cut(s) 72, 171
XapI RAATTY 1 cut(s) 484
XmiI GTMKAC 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.