MD15G1358100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0014755
Physical Location & Seq
Forward (+)
43183056 .. 43184141
1086 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1358100.v1.1.491

Sequence Viewer

Length: 540 bp
ATGGCAAAACAAGAGTTGGAGAAAGAGGAGAAGAACAATGGCACAAGAGAGAGGCCTAACAAGAAGGAAGTCATCATCACTGTCTATGTTGAAACACCATCACCGTCTGATTCGTCCCATCAGAAAACTGATGATCATGTTAAGAAGATCAAGCCCAAGCCTAGCTCCCAAAACCCTCATCAGACTGCGAAAACACGAATCCATGATCACCGAGCTCGACTCCTTGCTTATTCTCAAGAGCTAAGAACAACTGGTGATTCCCAGAAAGTGCAATGGCATAAGCCTAGGGTGGGAAACAAAAGGTTCACAACTCCAATAAGACTCAGAAGAACACAGACCAGATGGAGATACCAGCGCTTAGTACCAGAAGTAGACGTATATTGCAATCCCAAATCCATCACAGGCAGGAACAACAAGTCCGCCGAATCAGAAACAAGTTCTAACTTTCTGAGGAAGCTAAGGTGTGTGCTGAGGGGTATATCTGGCTGGAGCTGCAACAAGGGATCCAAAGTTGCTGAGAGAAATTATCATGCTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

20.82

Weight (kDa)

10.28

Isoelectric Point (pI)

49.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014755)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g39000
malus_domestica MD08G1172500.v1.1 MD15G1358100.v1.1
prunus_persica Prupe.1G505500_v2.0.a1
pyrus_communis pycom08g14730 pycom15g32040
rosa_laevigata RLG00000000610
rosa_multiflora Rmu_co7979250.1_g000001 Rmu_ssc0000392.1_g000008
rosa_roxburghii Rroxscaffold_3G00219370
rosa_rugosa Rorug07G0340900 Rorug07G0341000
rosa_samantha Rh7AG495700 Rh7BG467100 Rh7CG513200 Rh7DG480300
rosa_wichuraiana Rw7G041890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 372
AciI CCGC 1 cut(s) 420
AclWI GGATC 2 cut(s) 498, 511
AfaI GTAC 1 cut(s) 363
AfeI AGCGCT 1 cut(s) 356
AfiI CCNNNNNNNGG 1 cut(s) 290
AgsI TTSAA 1 cut(s) 92
AloI GAACNNNNNNTCC 2 cut(s) 401, 433
AluBI AGCT 5 cut(s) 165, 215, 241, 457, 492
AluI AGCT 5 cut(s) 165, 215, 241, 457, 492
Alw21I GWGCWC 1 cut(s) 217
AlwI GGATC 2 cut(s) 498, 511
Aor51HI AGCGCT 1 cut(s) 356
AoxI GGCC 1 cut(s) 53
ApeKI GCWGC 1 cut(s) 492
AspA2I CCTAGG 1 cut(s) 284
AspLEI GCGC 1 cut(s) 357
AsuHPI GGTGA 3 cut(s) 93, 200, 266
AvrII CCTAGG 1 cut(s) 284
BamHI GGATCC 1 cut(s) 503
BanII GRGCYC 1 cut(s) 217
Bbv12I GWGCWC 1 cut(s) 217
BbvCI CCTCAGC 1 cut(s) 470
BbvI GCAGC 1 cut(s) 479
BccI CCATC 4 cut(s) 106, 126, 336, 404
BclI TGATCA 2 cut(s) 133, 205
BfaI CTAG 2 cut(s) 162, 285
BfoI RGCGCY 1 cut(s) 358
BisI GCNGC 1 cut(s) 493
BlnI CCTAGG 1 cut(s) 284
BlsI GCNGC 1 cut(s) 494
BmiI GGNNCC 1 cut(s) 505
BplI GAGNNNNNCTC 2 cut(s) 204, 236
BpmI CTGGAG 1 cut(s) 508
Bpu10I CCTNAGC 2 cut(s) 458, 470
BpuEI CTTGAG 1 cut(s) 219
BsaJI CCNNGG 1 cut(s) 284
Bsc4I CCNNNNNNNGG 1 cut(s) 290
Bse1I ACTGG 1 cut(s) 256
Bse3DI GCAATG 1 cut(s) 278
BseDI CCNNGG 1 cut(s) 284
BseLI CCNNNNNNNGG 1 cut(s) 290
BseMI GCAATG 1 cut(s) 278
BseMII CTCAG 4 cut(s) 337, 440, 461, 507
BseNI ACTGG 1 cut(s) 256
BseRI GAGGAG 1 cut(s) 41
BseXI GCAGC 1 cut(s) 479
BshFI GGCC 1 cut(s) 55
BsiHKAI GWGCWC 1 cut(s) 217
BslFI GGGAC 1 cut(s) 100
BslI CCNNNNNNNGG 1 cut(s) 290
BsmFI GGGAC 1 cut(s) 100
BsnI GGCC 1 cut(s) 55
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 4 cut(s) 133, 147, 205, 503
BspACI CCGC 1 cut(s) 420
BspANI GGCC 1 cut(s) 55
BspCNI CTCAG 4 cut(s) 336, 441, 462, 508
BspLI GGNNCC 1 cut(s) 505
BspPI GGATC 2 cut(s) 498, 511
BsrDI GCAATG 1 cut(s) 278
BsrI ACTGG 1 cut(s) 256
BssECI CCNNGG 1 cut(s) 284
BssMI GATC 4 cut(s) 133, 147, 205, 503
BssT1I CCWWGG 1 cut(s) 284
Bst4CI ACNGT 2 cut(s) 82, 105
BstDEI CTNAG 7 cut(s) 242, 323, 358, 449, 458, 470, 516
BstH2I RGCGCY 1 cut(s) 358
BstHHI GCGC 1 cut(s) 357
BstKTI GATC 4 cut(s) 136, 150, 208, 506
BstMBI GATC 4 cut(s) 133, 147, 205, 503
BstMWI GCNNNNNNNGC 1 cut(s) 492
BstV1I GCAGC 1 cut(s) 479
BstX2I RGATCY 1 cut(s) 503
BstYI RGATCY 1 cut(s) 503
BsuRI GGCC 1 cut(s) 55
BtsIMutI CAGTG 1 cut(s) 78
CfoI GCGC 1 cut(s) 357
Csp6I GTAC 1 cut(s) 362
CviAII CATG 3 cut(s) 137, 203, 530
CviQI GTAC 1 cut(s) 362
DdeI CTNAG 7 cut(s) 242, 323, 358, 449, 458, 470, 516
DpnI GATC 4 cut(s) 135, 149, 207, 505
DpnII GATC 4 cut(s) 133, 147, 205, 503
EciI GGCGGA 1 cut(s) 409
Ecl136II GAGCTC 1 cut(s) 215
Eco130I CCWWGG 1 cut(s) 284
Eco147I AGGCCT 1 cut(s) 55
Eco24I GRGCYC 1 cut(s) 217
Eco47III AGCGCT 1 cut(s) 356
Eco53kI GAGCTC 1 cut(s) 215
EcoICRI GAGCTC 1 cut(s) 215
EcoT14I CCWWGG 1 cut(s) 284
EcoT38I GRGCYC 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 284
FaeI CATG 3 cut(s) 140, 206, 533
FaiI YATR 7 cut(s) 87, 138, 204, 279, 379, 479, 531
FaqI GGGAC 1 cut(s) 100
FatI CATG 3 cut(s) 136, 202, 529
FbaI TGATCA 2 cut(s) 133, 205
FblI GTMKAC 1 cut(s) 372
Fnu4HI GCNGC 1 cut(s) 493
FriOI GRGCYC 1 cut(s) 217
Fsp4HI GCNGC 1 cut(s) 493
FspBI CTAG 2 cut(s) 162, 285
GlaI GCGC 1 cut(s) 356
GluI GCNGC 1 cut(s) 493
GsuI CTGGAG 1 cut(s) 508
HaeII RGCGCY 1 cut(s) 358
HaeIII GGCC 1 cut(s) 55
HhaI GCGC 1 cut(s) 357
Hin1II CATG 3 cut(s) 140, 206, 533
Hin6I GCGC 1 cut(s) 355
HinP1I GCGC 1 cut(s) 355
HinfI GANTC 6 cut(s) 110, 198, 219, 257, 321, 425
HphI GGTGA 3 cut(s) 93, 200, 266
Hpy166II GTNNAC 2 cut(s) 306, 373
Hpy188I TCNGA 6 cut(s) 109, 123, 183, 326, 430, 450
Hpy188III TCNNGA 1 cut(s) 236
Hpy8I GTNNAC 2 cut(s) 306, 373
HpyAV CCTTC 1 cut(s) 58
HpyCH4III ACNGT 2 cut(s) 82, 105
HpyCH4IV ACGT 1 cut(s) 375
HpyCH4V TGCA 3 cut(s) 271, 384, 495
HpyF10VI GCNNNNNNNGC 1 cut(s) 492
HpyF3I CTNAG 7 cut(s) 242, 323, 358, 449, 458, 470, 516
HpySE526I ACGT 1 cut(s) 375
Hsp92II CATG 3 cut(s) 140, 206, 533
HspAI GCGC 1 cut(s) 355
Ksp22I TGATCA 2 cut(s) 133, 205
Kzo9I GATC 4 cut(s) 133, 147, 205, 503
LmnI GCTCC 2 cut(s) 170, 489
LpnPI CCDG 9 cut(s) 237, 275, 352, 365, 378, 387, 391, 468, 472
Lsp1109I GCAGC 1 cut(s) 479
MaeI CTAG 2 cut(s) 162, 285
MaeII ACGT 1 cut(s) 375
MalI GATC 4 cut(s) 135, 149, 207, 505
MboI GATC 4 cut(s) 133, 147, 205, 503
MboII GAAGA 3 cut(s) 43, 157, 339
MflI RGATCY 1 cut(s) 503
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 1 cut(s) 523
MlyI GAGTC 2 cut(s) 213, 315
MnlI CCTC 5 cut(s) 19, 45, 186, 444, 465
MseI TTAA 1 cut(s) 141
MwoI GCNNNNNNNGC 1 cut(s) 492
NdeII GATC 4 cut(s) 133, 147, 205, 503
NlaIII CATG 3 cut(s) 140, 206, 533
NlaIV GGNNCC 1 cut(s) 505
PceI AGGCCT 1 cut(s) 55
PfeI GAWTC 4 cut(s) 110, 198, 257, 425
PkrI GCNGC 1 cut(s) 494
PleI GAGTC 2 cut(s) 213, 315
PpsI GAGTC 2 cut(s) 213, 315
Psp124BI GAGCTC 1 cut(s) 217
PspN4I GGNNCC 1 cut(s) 505
PsuI RGATCY 1 cut(s) 503
RsaI GTAC 1 cut(s) 363
RsaNI GTAC 1 cut(s) 362
SacI GAGCTC 1 cut(s) 217
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 1 cut(s) 493
Sau3AI GATC 4 cut(s) 133, 147, 205, 503
SchI GAGTC 2 cut(s) 213, 315
SduI GDGCHC 1 cut(s) 217
SetI ASST 8 cut(s) 167, 217, 243, 305, 378, 459, 464, 494
SmlI CTYRAG 1 cut(s) 234
SmoI CTYRAG 1 cut(s) 234
Sse9I AATT 1 cut(s) 523
SseBI AGGCCT 1 cut(s) 55
SsiI CCGC 1 cut(s) 420
SspMI CTAG 2 cut(s) 162, 285
SstI GAGCTC 1 cut(s) 217
StuI AGGCCT 1 cut(s) 55
StyI CCWWGG 1 cut(s) 284
TaaI ACNGT 2 cut(s) 82, 105
TaiI ACGT 1 cut(s) 378
TaqI TCGA 1 cut(s) 217
TasI AATT 1 cut(s) 523
TfiI GAWTC 4 cut(s) 110, 198, 257, 425
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TscAI CASTG 1 cut(s) 85
TseI GCWGC 1 cut(s) 492
TspRI CASTG 1 cut(s) 85
XmaJI CCTAGG 1 cut(s) 284
XmiI GTMKAC 1 cut(s) 372
XspI CTAG 2 cut(s) 162, 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.