Rroxscaffold_3G00219370

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0014755
Physical Location & Seq
Forward (+)
1504501 .. 1505472
972 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00219370.1

Sequence Viewer

Length: 447 bp
ATGCATTCAATTCAATCACAAGCAAAAGCACGTCTCACTGATCCCAGAATCAAGGGTAACCAAGAGTTAGAGGAGAAGATGAAGAATAATAATGACACAAAAGCAAGGCCTAACAACAGGGAAGTCATCATCACTGTCTATGTTGAATCAGATTCCCTCTCGCATCATCCCATTAAGAAGATTAATCCCAACACAATCTGCAGAAAGCCTCATCAGACTGCGACAACACACATCTATGATCGCCGGGCTCATCTGCTTGCTTATGCTCAAGAGCTAAGAAAAACTGCTAATTCCCAACAGGTGCACTGGTCTAAGAATGGCTCAAAGCCTAAGCACAAGCTAAATAGAAATAGGTTCACTACTCCAGTGAGACTCCGGAGACCGAAAGAGGACGTTGAGGTGTATGCTGAGAGGATTGATGCACTGCAACAAAGGTTCCCAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

17.32

Weight (kDa)

10.28

Isoelectric Point (pI)

49.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014755)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g39000
malus_domestica MD08G1172500.v1.1 MD15G1358100.v1.1
prunus_persica Prupe.1G505500_v2.0.a1
pyrus_communis pycom08g14730 pycom15g32040
rosa_laevigata RLG00000000610
rosa_multiflora Rmu_co7979250.1_g000001 Rmu_ssc0000392.1_g000008
rosa_roxburghii Rroxscaffold_3G00219370
rosa_rugosa Rorug07G0340900 Rorug07G0341000
rosa_samantha Rh7AG495700 Rh7BG467100 Rh7CG513200 Rh7DG480300
rosa_wichuraiana Rw7G041890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 375
AclWI GGATC 1 cut(s) 35
AgsI TTSAA 3 cut(s) 9, 14, 146
AjiI CACGTC 1 cut(s) 32
AjnI CCWGG 1 cut(s) 439
AluBI AGCT 2 cut(s) 274, 340
AluI AGCT 2 cut(s) 274, 340
Alw21I GWGCWC 1 cut(s) 306
Alw26I GTCTC 3 cut(s) 38, 364, 373
Alw44I GTGCAC 1 cut(s) 302
AlwI GGATC 1 cut(s) 35
Aor13HI TCCGGA 1 cut(s) 375
AoxI GGCC 1 cut(s) 107
ApaLI GTGCAC 1 cut(s) 302
AseI ATTAAT 1 cut(s) 183
AsuC2I CCSGG 1 cut(s) 245
BaeGI GKGCMC 1 cut(s) 306
BanII GRGCYC 1 cut(s) 250
Bbv12I GWGCWC 1 cut(s) 306
BciT130I CCWGG 1 cut(s) 441
BcnI CCSGG 1 cut(s) 245
BcoDI GTCTC 3 cut(s) 38, 364, 373
BfmI CTRYAG 1 cut(s) 199
Bme1390I CCNGG 2 cut(s) 245, 441
BmgBI CACGTC 1 cut(s) 32
BmiI GGNNCC 1 cut(s) 437
BmrFI CCNGG 2 cut(s) 245, 441
BmsI GCATC 2 cut(s) 172, 409
BpmI CTGGAG 1 cut(s) 348
Bpu10I CCTNAGC 1 cut(s) 330
BpuEI CTTGAG 1 cut(s) 252
BpuMI CCSGG 1 cut(s) 245
BsaI GGTCTC 1 cut(s) 373
BsaJI CCNNGG 1 cut(s) 439
BsaWI WCCGGW 1 cut(s) 375
Bse1I ACTGG 2 cut(s) 311, 365
BseAI TCCGGA 1 cut(s) 375
BseBI CCWGG 1 cut(s) 441
BseDI CCNNGG 1 cut(s) 439
BseGI GGATG 1 cut(s) 166
BseMII CTCAG 1 cut(s) 399
BseNI ACTGG 2 cut(s) 311, 365
BseRI GAGGAG 1 cut(s) 86
BseSI GKGCMC 1 cut(s) 306
BshFI GGCC 1 cut(s) 109
BsiHKAI GWGCWC 1 cut(s) 306
BsiSI CCGG 2 cut(s) 244, 376
BsmAI GTCTC 3 cut(s) 38, 364, 373
BsmBI CGTCTC 1 cut(s) 38
BsmI GAATGC 1 cut(s) 4
BsnI GGCC 1 cut(s) 109
Bso31I GGTCTC 1 cut(s) 373
Bsp1286I GDGCHC 2 cut(s) 250, 306
Bsp13I TCCGGA 1 cut(s) 375
Bsp143I GATC 2 cut(s) 40, 238
BspANI GGCC 1 cut(s) 109
BspCNI CTCAG 1 cut(s) 400
BspEI TCCGGA 1 cut(s) 375
BspLI GGNNCC 1 cut(s) 437
BspMAI CTGCAG 1 cut(s) 203
BspPI GGATC 1 cut(s) 35
BspTNI GGTCTC 1 cut(s) 373
BsrI ACTGG 2 cut(s) 311, 365
BssECI CCNNGG 1 cut(s) 439
BssMI GATC 2 cut(s) 40, 238
Bst2UI CCWGG 1 cut(s) 441
Bst4CI ACNGT 1 cut(s) 136
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 4 cut(s) 275, 312, 330, 408
BstEII GGTNACC 1 cut(s) 56
BstF5I GGATG 1 cut(s) 166
BstKTI GATC 2 cut(s) 43, 241
BstMAI GTCTC 3 cut(s) 38, 364, 373
BstMBI GATC 2 cut(s) 40, 238
BstNI CCWGG 1 cut(s) 441
BstPI GGTNACC 1 cut(s) 56
BstSCI CCNGG 2 cut(s) 243, 439
BstSFI CTRYAG 1 cut(s) 199
BstSLI GKGCMC 1 cut(s) 306
BsuRI GGCC 1 cut(s) 109
BtrI CACGTC 1 cut(s) 32
BtsCI GGATG 1 cut(s) 166
BtsI GCAGTG 1 cut(s) 422
BtsIMutI CAGTG 5 cut(s) 36, 132, 304, 372, 422
Cac8I GCNNGC 1 cut(s) 258
CviJI RGCY 7 cut(s) 109, 208, 248, 274, 321, 328, 340
CviKI_1 RGCY 7 cut(s) 109, 208, 248, 274, 321, 328, 340
DdeI CTNAG 4 cut(s) 275, 312, 330, 408
DpnI GATC 2 cut(s) 42, 240
DpnII GATC 2 cut(s) 40, 238
Eco147I AGGCCT 1 cut(s) 109
Eco24I GRGCYC 1 cut(s) 250
Eco31I GGTCTC 1 cut(s) 373
Eco91I GGTNACC 1 cut(s) 56
EcoO65I GGTNACC 1 cut(s) 56
EcoRII CCWGG 1 cut(s) 439
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 250
Esp3I CGTCTC 1 cut(s) 38
FaiI YATR 4 cut(s) 141, 237, 264, 405
FokI GGATG 1 cut(s) 153
FriOI GRGCYC 1 cut(s) 250
GsuI CTGGAG 1 cut(s) 348
HaeIII GGCC 1 cut(s) 109
HapII CCGG 2 cut(s) 244, 376
HinfI GANTC 4 cut(s) 48, 146, 152, 372
HpaII CCGG 2 cut(s) 244, 376
Hpy166II GTNNAC 2 cut(s) 304, 357
Hpy188I TCNGA 2 cut(s) 151, 216
Hpy188III TCNNGA 2 cut(s) 269, 376
Hpy8I GTNNAC 2 cut(s) 304, 357
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4IV ACGT 2 cut(s) 31, 393
HpyCH4V TGCA 5 cut(s) 4, 201, 304, 422, 427
HpyF3I CTNAG 4 cut(s) 275, 312, 330, 408
HpySE526I ACGT 2 cut(s) 31, 393
Kpn2I TCCGGA 1 cut(s) 375
Kzo9I GATC 2 cut(s) 40, 238
LpnPI CCDG 8 cut(s) 58, 103, 257, 284, 292, 378, 389, 426
LweI GCATC 2 cut(s) 172, 409
MaeII ACGT 2 cut(s) 31, 393
MaeIII GTNAC 1 cut(s) 56
MalI GATC 2 cut(s) 42, 240
MboI GATC 2 cut(s) 40, 238
MboII GAAGA 3 cut(s) 88, 94, 190
MhlI GDGCHC 2 cut(s) 250, 306
MluCI AATT 2 cut(s) 9, 289
MlyI GAGTC 1 cut(s) 366
MnlI CCTC 6 cut(s) 64, 167, 219, 382, 391, 405
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 375
MseI TTAA 2 cut(s) 174, 183
MslI CAYNNNNRTG 1 cut(s) 234
MspI CCGG 2 cut(s) 244, 376
MspR9I CCNGG 2 cut(s) 245, 441
Mva1269I GAATGC 1 cut(s) 4
MvaI CCWGG 1 cut(s) 441
NciI CCSGG 1 cut(s) 245
NdeII GATC 2 cut(s) 40, 238
NlaIV GGNNCC 1 cut(s) 437
NsiI ATGCAT 1 cut(s) 6
PceI AGGCCT 1 cut(s) 109
PctI GAATGC 1 cut(s) 4
PfeI GAWTC 3 cut(s) 48, 146, 152
PleI GAGTC 1 cut(s) 366
PpsI GAGTC 1 cut(s) 366
PshBI ATTAAT 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 439
PspEI GGTNACC 1 cut(s) 56
PspGI CCWGG 1 cut(s) 439
PspN4I GGNNCC 1 cut(s) 437
PstI CTGCAG 1 cut(s) 203
RseI CAYNNNNRTG 1 cut(s) 234
SaqAI TTAA 2 cut(s) 174, 183
Sau3AI GATC 2 cut(s) 40, 238
SchI GAGTC 1 cut(s) 366
ScrFI CCNGG 2 cut(s) 245, 441
SduI GDGCHC 2 cut(s) 250, 306
SetI ASST 9 cut(s) 34, 276, 303, 342, 356, 396, 402, 437, 445
SfaNI GCATC 2 cut(s) 172, 409
SfcI CTRYAG 1 cut(s) 199
SmiMI CAYNNNNRTG 1 cut(s) 234
SmlI CTYRAG 1 cut(s) 267
SmoI CTYRAG 1 cut(s) 267
Sse9I AATT 2 cut(s) 9, 289
SseBI AGGCCT 1 cut(s) 109
StuI AGGCCT 1 cut(s) 109
StyD4I CCNGG 2 cut(s) 243, 439
TaaI ACNGT 1 cut(s) 136
TaiI ACGT 2 cut(s) 34, 396
TaqII GACCGA 1 cut(s) 397
TasI AATT 2 cut(s) 9, 289
TfiI GAWTC 3 cut(s) 48, 146, 152
Tru1I TTAA 2 cut(s) 174, 183
Tru9I TTAA 2 cut(s) 174, 183
TscAI CASTG 5 cut(s) 43, 139, 311, 372, 429
TspDTI ATGAA 1 cut(s) 95
TspRI CASTG 5 cut(s) 43, 139, 311, 372, 429
VneI GTGCAC 1 cut(s) 302
VspI ATTAAT 1 cut(s) 183
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.