Rh7CG513200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0014755
Physical Location & Seq
Reverse (-)
69233732 .. 69235072
1341 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG513200.1

Sequence Viewer

Length: 846 bp
ATGCGTGGGGATGATAAGTATGGAAGGTGTCAAACTGTCAACAATATTAGCGTTACTCATGGATTGATTTATTTGCATAATCTGTTTTTGTTGCTTCCAGGAGTAACACTTGTCTCATCTGTGTTTTCAAGAAGTGCCTCTTTAGACATAACAAAGGCAATGCATTCAATTCAATCACAAGCAAAAGCACGTCTCACTGATCCCAGAATCAAGGGTAACCAAGAGTTAGAGGAGAAGATGAAGAACAATAATGACACAAAAGTAAGGCCTAACAACAGGGAAGTCATCATCACTGTCTATGTTGAATCAGATTCCCTCTCGCATCATCCCATTAAGAAGATTAATCCCAACACAATCTGCAGAAAGCCTCATCAGACTGCGACAACACGCATCTATGATCGCCGGGCTCATCTGCTTGCTTATGCTCAAGAGCTAAGAAAAACTGCTAATTCCCAACAGGTGCACTGGCCTAAGAATGGCTCAAAGCCTAAGCACAAGCTAAATGGAAATAGGTTCACAACTCCAGTGAGACTCCGGAGACCAAAAGGTAGCAGATGGAGGTATCAGCGATTAGTACCAGAAGTCGACATACCGTGCAATTCCAAATGGAATAGTTGCAGCAACAGAAAGGCTAACGAATCAAAAAGGAATTCGAACATGATGGTACATTATAAACATGTCGATCAATCTTTTTCCACATTCTCCGTTTCTAGGTATGCATTATGCACATTTGTGTTAATGCATATATCTGTGTGTATGCAGAGGAAGTTGAGGTGTATGCTGAGAGGCTTGATGCACTGCAACAAAGGTTCCCAAGTTGAACGGAAACATCATCAAGCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

281

Amino Acids

32.55

Weight (kDa)

10.31

Isoelectric Point (pI)

48.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014755)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g39000
malus_domestica MD08G1172500.v1.1 MD15G1358100.v1.1
prunus_persica Prupe.1G505500_v2.0.a1
pyrus_communis pycom08g14730 pycom15g32040
rosa_laevigata RLG00000000610
rosa_multiflora Rmu_co7979250.1_g000001 Rmu_ssc0000392.1_g000008
rosa_roxburghii Rroxscaffold_3G00219370
rosa_rugosa Rorug07G0340900 Rorug07G0341000
rosa_samantha Rh7AG495700 Rh7BG467100 Rh7CG513200 Rh7DG480300
rosa_wichuraiana Rw7G041890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 672
AccI GTMKAC 1 cut(s) 585
AccIII TCCGGA 1 cut(s) 534
AclWI GGATC 1 cut(s) 194
AcsI RAATTY 1 cut(s) 649
AfaI GTAC 2 cut(s) 576, 666
AfiI CCNNNNNNNGG 2 cut(s) 476, 711
AflIII ACRYGT 1 cut(s) 676
AgsI TTSAA 5 cut(s) 129, 168, 173, 305, 821
AjiI CACGTC 1 cut(s) 191
AjnI CCWGG 1 cut(s) 97
AleI CACNNNNGTG 1 cut(s) 731
AluBI AGCT 3 cut(s) 433, 499, 839
AluI AGCT 3 cut(s) 433, 499, 839
Alw21I GWGCWC 1 cut(s) 465
Alw26I GTCTC 4 cut(s) 118, 197, 523, 532
Alw44I GTGCAC 1 cut(s) 461
AlwI GGATC 1 cut(s) 194
Aor13HI TCCGGA 1 cut(s) 534
AoxI GGCC 2 cut(s) 266, 467
ApaLI GTGCAC 1 cut(s) 461
ApeKI GCWGC 1 cut(s) 618
ApoI RAATTY 1 cut(s) 649
AseI ATTAAT 1 cut(s) 342
AsuC2I CCSGG 1 cut(s) 404
AsuII TTCGAA 1 cut(s) 653
BaeGI GKGCMC 1 cut(s) 465
BanII GRGCYC 1 cut(s) 409
BarI GAAGNNNNNNTAC 2 cut(s) 573, 605
Bbv12I GWGCWC 1 cut(s) 465
BbvI GCAGC 1 cut(s) 630
BccI CCATC 2 cut(s) 549, 655
BciT130I CCWGG 1 cut(s) 99
BcnI CCSGG 1 cut(s) 404
BcoDI GTCTC 4 cut(s) 118, 197, 523, 532
BfaI CTAG 1 cut(s) 711
BfmI CTRYAG 1 cut(s) 358
BisI GCNGC 1 cut(s) 619
BlsI GCNGC 1 cut(s) 620
Bme1390I CCNGG 2 cut(s) 99, 404
BmgBI CACGTC 1 cut(s) 191
BmiI GGNNCC 1 cut(s) 811
BmrFI CCNGG 2 cut(s) 99, 404
BmsI GCATC 3 cut(s) 331, 399, 783
BpmI CTGGAG 1 cut(s) 507
Bpu10I CCTNAGC 1 cut(s) 489
Bpu14I TTCGAA 1 cut(s) 653
BpuEI CTTGAG 1 cut(s) 411
BpuMI CCSGG 1 cut(s) 404
BsaI GGTCTC 1 cut(s) 532
BsaWI WCCGGW 1 cut(s) 534
Bsc4I CCNNNNNNNGG 2 cut(s) 476, 711
Bse1I ACTGG 2 cut(s) 470, 524
Bse3DI GCAATG 1 cut(s) 165
BseAI TCCGGA 1 cut(s) 534
BseBI CCWGG 1 cut(s) 99
BseGI GGATG 2 cut(s) 16, 325
BseLI CCNNNNNNNGG 2 cut(s) 476, 711
BseMI GCAATG 1 cut(s) 165
BseMII CTCAG 1 cut(s) 773
BseNI ACTGG 2 cut(s) 470, 524
BseRI GAGGAG 1 cut(s) 245
BseSI GKGCMC 1 cut(s) 465
BseXI GCAGC 1 cut(s) 630
BshFI GGCC 2 cut(s) 268, 469
BsiHKAI GWGCWC 1 cut(s) 465
BsiSI CCGG 2 cut(s) 403, 535
BslI CCNNNNNNNGG 2 cut(s) 476, 711
BsmAI GTCTC 4 cut(s) 118, 197, 523, 532
BsmBI CGTCTC 1 cut(s) 197
BsmI GAATGC 1 cut(s) 163
BsnI GGCC 2 cut(s) 268, 469
Bso31I GGTCTC 1 cut(s) 532
Bsp119I TTCGAA 1 cut(s) 653
Bsp1286I GDGCHC 2 cut(s) 409, 465
Bsp13I TCCGGA 1 cut(s) 534
Bsp143I GATC 3 cut(s) 199, 397, 682
BspANI GGCC 2 cut(s) 268, 469
BspCNI CTCAG 1 cut(s) 774
BspEI TCCGGA 1 cut(s) 534
BspLI GGNNCC 1 cut(s) 811
BspMAI CTGCAG 1 cut(s) 362
BspPI GGATC 1 cut(s) 194
BspT104I TTCGAA 1 cut(s) 653
BspTNI GGTCTC 1 cut(s) 532
BsrDI GCAATG 1 cut(s) 165
BsrI ACTGG 2 cut(s) 470, 524
BssMI GATC 3 cut(s) 199, 397, 682
Bst2UI CCWGG 1 cut(s) 99
Bst4CI ACNGT 3 cut(s) 37, 295, 594
BstBI TTCGAA 1 cut(s) 653
BstC8I GCNNGC 1 cut(s) 417
BstDEI CTNAG 4 cut(s) 434, 471, 489, 782
BstEII GGTNACC 1 cut(s) 215
BstF5I GGATG 2 cut(s) 16, 325
BstKTI GATC 3 cut(s) 202, 400, 685
BstMAI GTCTC 4 cut(s) 118, 197, 523, 532
BstMBI GATC 3 cut(s) 199, 397, 682
BstNI CCWGG 1 cut(s) 99
BstNSI RCATGY 1 cut(s) 680
BstPI GGTNACC 1 cut(s) 215
BstSCI CCNGG 2 cut(s) 97, 402
BstSFI CTRYAG 1 cut(s) 358
BstSLI GKGCMC 1 cut(s) 465
BstV1I GCAGC 1 cut(s) 630
BsuRI GGCC 2 cut(s) 268, 469
BtrI CACGTC 1 cut(s) 191
BtsCI GGATG 2 cut(s) 16, 325
BtsI GCAGTG 1 cut(s) 796
BtsIMutI CAGTG 5 cut(s) 195, 291, 463, 531, 796
Cac8I GCNNGC 1 cut(s) 417
Csp6I GTAC 2 cut(s) 575, 665
CviAII CATG 3 cut(s) 59, 658, 677
CviQI GTAC 2 cut(s) 575, 665
DdeI CTNAG 4 cut(s) 434, 471, 489, 782
DpnI GATC 3 cut(s) 201, 399, 684
DpnII GATC 3 cut(s) 199, 397, 682
Eco147I AGGCCT 1 cut(s) 268
Eco24I GRGCYC 1 cut(s) 409
Eco31I GGTCTC 1 cut(s) 532
Eco91I GGTNACC 1 cut(s) 215
EcoO65I GGTNACC 1 cut(s) 215
EcoRI GAATTC 1 cut(s) 649
EcoRII CCWGG 1 cut(s) 97
EcoT22I ATGCAT 3 cut(s) 165, 721, 744
EcoT38I GRGCYC 1 cut(s) 409
Esp3I CGTCTC 1 cut(s) 197
FaeI CATG 3 cut(s) 62, 661, 680
FalI AAGNNNNNCTT 2 cut(s) 124, 156
FatI CATG 3 cut(s) 58, 657, 676
FblI GTMKAC 1 cut(s) 585
Fnu4HI GCNGC 1 cut(s) 619
FokI GGATG 2 cut(s) 23, 312
FriOI GRGCYC 1 cut(s) 409
Fsp4HI GCNGC 1 cut(s) 619
FspBI CTAG 1 cut(s) 711
GluI GCNGC 1 cut(s) 619
GsuI CTGGAG 1 cut(s) 507
HaeIII GGCC 2 cut(s) 268, 469
HapII CCGG 2 cut(s) 403, 535
Hin1II CATG 3 cut(s) 62, 661, 680
HincII GTYRAC 2 cut(s) 40, 586
HindII GTYRAC 2 cut(s) 40, 586
HinfI GANTC 5 cut(s) 207, 305, 311, 531, 638
HpaII CCGG 2 cut(s) 403, 535
Hpy166II GTNNAC 4 cut(s) 40, 463, 516, 586
Hpy188I TCNGA 2 cut(s) 310, 375
Hpy188III TCNNGA 3 cut(s) 129, 428, 535
Hpy8I GTNNAC 4 cut(s) 40, 463, 516, 586
HpyAV CCTTC 1 cut(s) 18
HpyCH4III ACNGT 3 cut(s) 37, 295, 594
HpyCH4IV ACGT 1 cut(s) 190
HpyF3I CTNAG 4 cut(s) 434, 471, 489, 782
HpySE526I ACGT 1 cut(s) 190
Hsp92II CATG 3 cut(s) 62, 661, 680
Kpn2I TCCGGA 1 cut(s) 534
Kzo9I GATC 3 cut(s) 199, 397, 682
Lsp1109I GCAGC 1 cut(s) 630
LweI GCATC 3 cut(s) 331, 399, 783
MaeI CTAG 1 cut(s) 711
MaeII ACGT 1 cut(s) 190
MaeIII GTNAC 3 cut(s) 52, 103, 215
MalI GATC 3 cut(s) 201, 399, 684
MboI GATC 3 cut(s) 199, 397, 682
MboII GAAGA 3 cut(s) 247, 253, 349
MhlI GDGCHC 2 cut(s) 409, 465
MluCI AATT 4 cut(s) 168, 448, 598, 649
MlyI GAGTC 1 cut(s) 525
MnlI CCTC 8 cut(s) 148, 223, 326, 378, 552, 756, 765, 779
Mph1103I ATGCAT 3 cut(s) 165, 721, 744
MroI TCCGGA 1 cut(s) 534
MseI TTAA 3 cut(s) 333, 342, 737
MslI CAYNNNNRTG 1 cut(s) 731
MspI CCGG 2 cut(s) 403, 535
MspR9I CCNGG 2 cut(s) 99, 404
Mva1269I GAATGC 1 cut(s) 163
MvaI CCWGG 1 cut(s) 99
NciI CCSGG 1 cut(s) 404
NdeII GATC 3 cut(s) 199, 397, 682
NlaIII CATG 3 cut(s) 62, 661, 680
NlaIV GGNNCC 1 cut(s) 811
NsiI ATGCAT 3 cut(s) 165, 721, 744
NspI RCATGY 1 cut(s) 680
NspV TTCGAA 1 cut(s) 653
OliI CACNNNNGTG 1 cut(s) 731
PceI AGGCCT 1 cut(s) 268
PciI ACATGT 1 cut(s) 676
PctI GAATGC 1 cut(s) 163
PfeI GAWTC 4 cut(s) 207, 305, 311, 638
PfoI TCCNGGA 1 cut(s) 97
PkrI GCNGC 1 cut(s) 620
PleI GAGTC 1 cut(s) 525
PpsI GAGTC 1 cut(s) 525
PscI ACATGT 1 cut(s) 676
PshBI ATTAAT 1 cut(s) 342
PsiI TTATAA 1 cut(s) 672
Psp6I CCWGG 1 cut(s) 97
PspEI GGTNACC 1 cut(s) 215
PspGI CCWGG 1 cut(s) 97
PspN4I GGNNCC 1 cut(s) 811
PstI CTGCAG 1 cut(s) 362
RsaI GTAC 2 cut(s) 576, 666
RsaNI GTAC 2 cut(s) 575, 665
RseI CAYNNNNRTG 1 cut(s) 731
SalI GTCGAC 1 cut(s) 584
SaqAI TTAA 3 cut(s) 333, 342, 737
SatI GCNGC 1 cut(s) 619
Sau3AI GATC 3 cut(s) 199, 397, 682
SchI GAGTC 1 cut(s) 525
ScrFI CCNGG 2 cut(s) 99, 404
SduI GDGCHC 2 cut(s) 409, 465
SfaNI GCATC 3 cut(s) 331, 399, 783
SfcI CTRYAG 1 cut(s) 358
SfuI TTCGAA 1 cut(s) 653
SmiMI CAYNNNNRTG 1 cut(s) 731
SmlI CTYRAG 1 cut(s) 426
SmoI CTYRAG 1 cut(s) 426
Sse9I AATT 4 cut(s) 168, 448, 598, 649
SseBI AGGCCT 1 cut(s) 268
SspI AATATT 1 cut(s) 46
SspMI CTAG 1 cut(s) 711
StuI AGGCCT 1 cut(s) 268
StyD4I CCNGG 2 cut(s) 97, 402
TaaI ACNGT 3 cut(s) 37, 295, 594
TaiI ACGT 1 cut(s) 193
TaqI TCGA 3 cut(s) 585, 653, 681
TasI AATT 4 cut(s) 168, 448, 598, 649
TfiI GAWTC 4 cut(s) 207, 305, 311, 638
Tru1I TTAA 3 cut(s) 333, 342, 737
Tru9I TTAA 3 cut(s) 333, 342, 737
TscAI CASTG 5 cut(s) 202, 298, 470, 531, 803
TseI GCWGC 1 cut(s) 618
TspDTI ATGAA 1 cut(s) 254
TspGWI ACGGA 2 cut(s) 694, 838
TspRI CASTG 5 cut(s) 202, 298, 470, 531, 803
VneI GTGCAC 1 cut(s) 461
VspI ATTAAT 1 cut(s) 342
XapI RAATTY 1 cut(s) 649
XceI RCATGY 1 cut(s) 680
XmiI GTMKAC 1 cut(s) 585
XspI CTAG 1 cut(s) 711
Zsp2I ATGCAT 3 cut(s) 165, 721, 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.