Rmu_ssc0000392.1_g000008

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000392.1
OG0014755
Physical Location & Seq
Forward (+)
18967 .. 19795
829 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000392.1_g000008.1.cds

Sequence Viewer

Length: 504 bp
atgcattcaattcaatcacaagcaaaagcacgtctcactgatcccagaatcaagggtaaccaagagttagaggagaagatgaagaataataatgacacaaaagtaaggcctaacaacagggaagtcatcatcactgtctatgttgaatcagattccctctcgcatcatcccattaagaagattaatcccaacacaatctgcagaaagcctcatcagactgcgacaacacgcatctatgatcgccgggctcatctgcttgcttatgctcaagagctaagaaaaactgctaattcccaacaggtgcactggcctaagaattatggctcaaagcctaagcacaaggagaaaaatttgcaacaaattatcaaactgaaaatgtatgtcattactgagcagctaaatagaaataggttcacaactccagtgagactccggagaccaaaagaggaagttgaggtgtatgctgagaggattgatgcactgcaacaaaggttcccaagttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

19.79

Weight (kDa)

10.18

Isoelectric Point (pI)

52.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014755)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g39000
malus_domestica MD08G1172500.v1.1 MD15G1358100.v1.1
prunus_persica Prupe.1G505500_v2.0.a1
pyrus_communis pycom08g14730 pycom15g32040
rosa_laevigata RLG00000000610
rosa_multiflora Rmu_co7979250.1_g000001 Rmu_ssc0000392.1_g000008
rosa_roxburghii Rroxscaffold_3G00219370
rosa_rugosa Rorug07G0340900 Rorug07G0341000
rosa_samantha Rh7AG495700 Rh7BG467100 Rh7CG513200 Rh7DG480300
rosa_wichuraiana Rw7G041890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 432
AclWI GGATC 1 cut(s) 35
AcsI RAATTY 1 cut(s) 349
AgsI TTSAA 3 cut(s) 9, 14, 146
AjiI CACGTC 1 cut(s) 32
AluBI AGCT 2 cut(s) 274, 397
AluI AGCT 2 cut(s) 274, 397
Alw21I GWGCWC 1 cut(s) 306
Alw26I GTCTC 3 cut(s) 38, 421, 430
Alw44I GTGCAC 1 cut(s) 302
AlwI GGATC 1 cut(s) 35
Aor13HI TCCGGA 1 cut(s) 432
AoxI GGCC 2 cut(s) 107, 308
ApaLI GTGCAC 1 cut(s) 302
ApeKI GCWGC 1 cut(s) 394
ApoI RAATTY 1 cut(s) 349
AseI ATTAAT 1 cut(s) 183
AsuC2I CCSGG 1 cut(s) 245
BaeGI GKGCMC 1 cut(s) 306
BanII GRGCYC 1 cut(s) 250
Bbv12I GWGCWC 1 cut(s) 306
BbvI GCAGC 1 cut(s) 406
BcnI CCSGG 1 cut(s) 245
BcoDI GTCTC 3 cut(s) 38, 421, 430
BfmI CTRYAG 1 cut(s) 199
BisI GCNGC 1 cut(s) 395
BlsI GCNGC 1 cut(s) 396
Bme1390I CCNGG 1 cut(s) 245
BmgBI CACGTC 1 cut(s) 32
BmiI GGNNCC 1 cut(s) 494
BmrFI CCNGG 1 cut(s) 245
BmsI GCATC 3 cut(s) 172, 240, 466
BpmI CTGGAG 1 cut(s) 405
Bpu10I CCTNAGC 1 cut(s) 333
BpuEI CTTGAG 1 cut(s) 252
BpuMI CCSGG 1 cut(s) 245
BsaI GGTCTC 1 cut(s) 430
BsaWI WCCGGW 1 cut(s) 432
Bse1I ACTGG 2 cut(s) 311, 422
BseAI TCCGGA 1 cut(s) 432
BseGI GGATG 1 cut(s) 166
BseMII CTCAG 2 cut(s) 381, 456
BseNI ACTGG 2 cut(s) 311, 422
BseRI GAGGAG 1 cut(s) 86
BseSI GKGCMC 1 cut(s) 306
BseXI GCAGC 1 cut(s) 406
BshFI GGCC 2 cut(s) 109, 310
BsiHKAI GWGCWC 1 cut(s) 306
BsiSI CCGG 2 cut(s) 244, 433
BsmAI GTCTC 3 cut(s) 38, 421, 430
BsmBI CGTCTC 1 cut(s) 38
BsmI GAATGC 1 cut(s) 4
BsnI GGCC 2 cut(s) 109, 310
Bso31I GGTCTC 1 cut(s) 430
Bsp1286I GDGCHC 2 cut(s) 250, 306
Bsp13I TCCGGA 1 cut(s) 432
Bsp143I GATC 2 cut(s) 40, 238
BspANI GGCC 2 cut(s) 109, 310
BspCNI CTCAG 2 cut(s) 382, 457
BspEI TCCGGA 1 cut(s) 432
BspLI GGNNCC 1 cut(s) 494
BspMAI CTGCAG 1 cut(s) 203
BspPI GGATC 1 cut(s) 35
BspTNI GGTCTC 1 cut(s) 430
BsrI ACTGG 2 cut(s) 311, 422
BssMI GATC 2 cut(s) 40, 238
Bst4CI ACNGT 1 cut(s) 136
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 5 cut(s) 275, 312, 333, 390, 465
BstEII GGTNACC 1 cut(s) 56
BstF5I GGATG 1 cut(s) 166
BstKTI GATC 2 cut(s) 43, 241
BstMAI GTCTC 3 cut(s) 38, 421, 430
BstMBI GATC 2 cut(s) 40, 238
BstPI GGTNACC 1 cut(s) 56
BstSCI CCNGG 1 cut(s) 243
BstSFI CTRYAG 1 cut(s) 199
BstSLI GKGCMC 1 cut(s) 306
BstV1I GCAGC 1 cut(s) 406
BsuRI GGCC 2 cut(s) 109, 310
BtrI CACGTC 1 cut(s) 32
BtsCI GGATG 1 cut(s) 166
BtsI GCAGTG 1 cut(s) 479
BtsIMutI CAGTG 5 cut(s) 36, 132, 304, 429, 479
Cac8I GCNNGC 1 cut(s) 258
CviJI RGCY 8 cut(s) 109, 208, 248, 274, 310, 324, 331, 397
CviKI_1 RGCY 8 cut(s) 109, 208, 248, 274, 310, 324, 331, 397
DdeI CTNAG 5 cut(s) 275, 312, 333, 390, 465
DpnI GATC 2 cut(s) 42, 240
DpnII GATC 2 cut(s) 40, 238
Eco147I AGGCCT 1 cut(s) 109
Eco24I GRGCYC 1 cut(s) 250
Eco31I GGTCTC 1 cut(s) 430
Eco91I GGTNACC 1 cut(s) 56
EcoO65I GGTNACC 1 cut(s) 56
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 250
Esp3I CGTCTC 1 cut(s) 38
FaiI YATR 6 cut(s) 141, 237, 264, 321, 381, 462
Fnu4HI GCNGC 1 cut(s) 395
FokI GGATG 1 cut(s) 153
FriOI GRGCYC 1 cut(s) 250
Fsp4HI GCNGC 1 cut(s) 395
GluI GCNGC 1 cut(s) 395
GsuI CTGGAG 1 cut(s) 405
HaeIII GGCC 2 cut(s) 109, 310
HapII CCGG 2 cut(s) 244, 433
HinfI GANTC 4 cut(s) 48, 146, 152, 429
HpaII CCGG 2 cut(s) 244, 433
Hpy166II GTNNAC 2 cut(s) 304, 414
Hpy188I TCNGA 2 cut(s) 151, 216
Hpy188III TCNNGA 2 cut(s) 269, 433
Hpy8I GTNNAC 2 cut(s) 304, 414
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4IV ACGT 1 cut(s) 31
HpyCH4V TGCA 6 cut(s) 4, 201, 304, 355, 479, 484
HpyF3I CTNAG 5 cut(s) 275, 312, 333, 390, 465
HpySE526I ACGT 1 cut(s) 31
Kpn2I TCCGGA 1 cut(s) 432
Kzo9I GATC 2 cut(s) 40, 238
LpnPI CCDG 7 cut(s) 58, 103, 257, 284, 292, 435, 446
Lsp1109I GCAGC 1 cut(s) 406
LweI GCATC 3 cut(s) 172, 240, 466
MaeII ACGT 1 cut(s) 31
MaeIII GTNAC 1 cut(s) 56
MalI GATC 2 cut(s) 42, 240
MboI GATC 2 cut(s) 40, 238
MboII GAAGA 3 cut(s) 88, 94, 190
MhlI GDGCHC 2 cut(s) 250, 306
MluCI AATT 5 cut(s) 9, 289, 316, 349, 360
MlyI GAGTC 1 cut(s) 423
MnlI CCTC 6 cut(s) 64, 167, 219, 439, 448, 462
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 432
MseI TTAA 2 cut(s) 174, 183
MspI CCGG 2 cut(s) 244, 433
MspR9I CCNGG 1 cut(s) 245
Mva1269I GAATGC 1 cut(s) 4
NciI CCSGG 1 cut(s) 245
NdeII GATC 2 cut(s) 40, 238
NlaIV GGNNCC 1 cut(s) 494
NsiI ATGCAT 1 cut(s) 6
PceI AGGCCT 1 cut(s) 109
PctI GAATGC 1 cut(s) 4
PfeI GAWTC 3 cut(s) 48, 146, 152
PkrI GCNGC 1 cut(s) 396
PleI GAGTC 1 cut(s) 423
PpsI GAGTC 1 cut(s) 423
PshBI ATTAAT 1 cut(s) 183
PspEI GGTNACC 1 cut(s) 56
PspN4I GGNNCC 1 cut(s) 494
PstI CTGCAG 1 cut(s) 203
SaqAI TTAA 2 cut(s) 174, 183
SatI GCNGC 1 cut(s) 395
Sau3AI GATC 2 cut(s) 40, 238
SchI GAGTC 1 cut(s) 423
ScrFI CCNGG 1 cut(s) 245
SduI GDGCHC 2 cut(s) 250, 306
SetI ASST 7 cut(s) 34, 276, 303, 399, 413, 459, 494
SfaNI GCATC 3 cut(s) 172, 240, 466
SfcI CTRYAG 1 cut(s) 199
SmlI CTYRAG 1 cut(s) 267
SmoI CTYRAG 1 cut(s) 267
Sse9I AATT 5 cut(s) 9, 289, 316, 349, 360
SseBI AGGCCT 1 cut(s) 109
StuI AGGCCT 1 cut(s) 109
StyD4I CCNGG 1 cut(s) 243
TaaI ACNGT 1 cut(s) 136
TaiI ACGT 1 cut(s) 34
TasI AATT 5 cut(s) 9, 289, 316, 349, 360
TfiI GAWTC 3 cut(s) 48, 146, 152
Tru1I TTAA 2 cut(s) 174, 183
Tru9I TTAA 2 cut(s) 174, 183
TscAI CASTG 5 cut(s) 43, 139, 311, 429, 486
TseI GCWGC 1 cut(s) 394
TspDTI ATGAA 1 cut(s) 95
TspRI CASTG 5 cut(s) 43, 139, 311, 429, 486
VneI GTGCAC 1 cut(s) 302
VspI ATTAAT 1 cut(s) 183
XapI RAATTY 1 cut(s) 349
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.