Rh7DG480300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0014755
Physical Location & Seq
Reverse (-)
68539550 .. 68540400
851 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG480300.1

Sequence Viewer

Length: 582 bp
ATGCATTCAATTCAATCACAAGCAAAAGCACGTCTCACTGATCCCAGAATCAAGGGTAACCAAGAGTTAGAGGAGAAGATGAAGAATAATAATGACACAAAAGTAAGGCCTAACGACAGGGAAGTCATCATCACTGTCTATGTTGAATCAGATTCCCTCTCGCATCATCCCATTAAGAAGATTAATCCCAACACAATCTGCAGAAAGCCTCATCAGACTGCGACAACACGCGTCTATGATCGCCGGGCTCATCTGCTTGCTTATGCCCAAGAGCTAAGAAAAACTGCTAATTCCCAACAGGTGCACTGGCCTAAGAATGGTTCGAAGCACAAGCTAAACAGAAATAGGTTCACAACTCCAGTGAGACTCCGGAGACGAAAAGGTAGCAGATGGAGGTATCAGCGATTAGTACCAGAAGTCGACATACCGTGCAATTCCAAATGGAATAGTTGCAGCAACAGAAAGGCTACCGAATCAAAAAGGAATTCAAACATGATGAGGAAGTTGAGGTGTATGCTGAGAGGATTGATGCACTGCAACAAAGGTTCCCAAGTTGAACGGAAACATCATCAAGCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

22.81

Weight (kDa)

10.78

Isoelectric Point (pI)

50.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014755)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g39000
malus_domestica MD08G1172500.v1.1 MD15G1358100.v1.1
prunus_persica Prupe.1G505500_v2.0.a1
pyrus_communis pycom08g14730 pycom15g32040
rosa_laevigata RLG00000000610
rosa_multiflora Rmu_co7979250.1_g000001 Rmu_ssc0000392.1_g000008
rosa_roxburghii Rroxscaffold_3G00219370
rosa_rugosa Rorug07G0340900 Rorug07G0341000
rosa_samantha Rh7AG495700 Rh7BG467100 Rh7CG513200 Rh7DG480300
rosa_wichuraiana Rw7G041890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 122
AccI GTMKAC 1 cut(s) 420
AccII CGCG 1 cut(s) 231
AccIII TCCGGA 1 cut(s) 369
AclWI GGATC 1 cut(s) 35
AcsI RAATTY 1 cut(s) 484
AfaI GTAC 1 cut(s) 411
AfiI CCNNNNNNNGG 1 cut(s) 317
AflIII ACRYGT 1 cut(s) 229
AgsI TTSAA 5 cut(s) 9, 14, 146, 489, 557
AjiI CACGTC 1 cut(s) 32
AluBI AGCT 3 cut(s) 274, 334, 575
AluI AGCT 3 cut(s) 274, 334, 575
Alw21I GWGCWC 1 cut(s) 306
Alw26I GTCTC 3 cut(s) 38, 358, 367
Alw44I GTGCAC 1 cut(s) 302
AlwI GGATC 1 cut(s) 35
Aor13HI TCCGGA 1 cut(s) 369
AoxI GGCC 2 cut(s) 107, 308
ApaLI GTGCAC 1 cut(s) 302
ApeKI GCWGC 1 cut(s) 453
ApoI RAATTY 1 cut(s) 484
AseI ATTAAT 1 cut(s) 183
AsuC2I CCSGG 1 cut(s) 245
AsuII TTCGAA 1 cut(s) 323
BaeGI GKGCMC 1 cut(s) 306
BanII GRGCYC 1 cut(s) 250
BarI GAAGNNNNNNTAC 2 cut(s) 408, 440
Bbv12I GWGCWC 1 cut(s) 306
BbvI GCAGC 1 cut(s) 465
BccI CCATC 1 cut(s) 384
BcnI CCSGG 1 cut(s) 245
BcoDI GTCTC 3 cut(s) 38, 358, 367
BfmI CTRYAG 1 cut(s) 199
BisI GCNGC 1 cut(s) 454
BlsI GCNGC 1 cut(s) 455
Bme1390I CCNGG 1 cut(s) 245
BmgBI CACGTC 1 cut(s) 32
BmiI GGNNCC 1 cut(s) 547
BmrFI CCNGG 1 cut(s) 245
BmsI GCATC 2 cut(s) 172, 519
BpmI CTGGAG 1 cut(s) 342
Bpu14I TTCGAA 1 cut(s) 323
BpuMI CCSGG 1 cut(s) 245
BsaWI WCCGGW 1 cut(s) 369
Bsc4I CCNNNNNNNGG 1 cut(s) 317
Bse1I ACTGG 2 cut(s) 311, 359
BseAI TCCGGA 1 cut(s) 369
BseGI GGATG 1 cut(s) 166
BseLI CCNNNNNNNGG 1 cut(s) 317
BseMII CTCAG 1 cut(s) 509
BseNI ACTGG 2 cut(s) 311, 359
BseRI GAGGAG 1 cut(s) 86
BseSI GKGCMC 1 cut(s) 306
BseXI GCAGC 1 cut(s) 465
Bsh1236I CGCG 1 cut(s) 231
BshFI GGCC 2 cut(s) 109, 310
BsiHKAI GWGCWC 1 cut(s) 306
BsiSI CCGG 2 cut(s) 244, 370
BslI CCNNNNNNNGG 1 cut(s) 317
BsmAI GTCTC 3 cut(s) 38, 358, 367
BsmBI CGTCTC 2 cut(s) 38, 367
BsmI GAATGC 1 cut(s) 4
BsnI GGCC 2 cut(s) 109, 310
Bsp119I TTCGAA 1 cut(s) 323
Bsp1286I GDGCHC 2 cut(s) 250, 306
Bsp13I TCCGGA 1 cut(s) 369
Bsp143I GATC 2 cut(s) 40, 238
BspANI GGCC 2 cut(s) 109, 310
BspCNI CTCAG 1 cut(s) 510
BspEI TCCGGA 1 cut(s) 369
BspFNI CGCG 1 cut(s) 231
BspLI GGNNCC 1 cut(s) 547
BspMAI CTGCAG 1 cut(s) 203
BspPI GGATC 1 cut(s) 35
BspT104I TTCGAA 1 cut(s) 323
BsrI ACTGG 2 cut(s) 311, 359
BssMI GATC 2 cut(s) 40, 238
Bst4CI ACNGT 2 cut(s) 136, 429
BstBI TTCGAA 1 cut(s) 323
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 3 cut(s) 275, 312, 518
BstEII GGTNACC 1 cut(s) 56
BstF5I GGATG 1 cut(s) 166
BstFNI CGCG 1 cut(s) 231
BstKTI GATC 2 cut(s) 43, 241
BstMAI GTCTC 3 cut(s) 38, 358, 367
BstMBI GATC 2 cut(s) 40, 238
BstPI GGTNACC 1 cut(s) 56
BstSCI CCNGG 1 cut(s) 243
BstSFI CTRYAG 1 cut(s) 199
BstSLI GKGCMC 1 cut(s) 306
BstUI CGCG 1 cut(s) 231
BstV1I GCAGC 1 cut(s) 465
BsuRI GGCC 2 cut(s) 109, 310
BtrI CACGTC 1 cut(s) 32
BtsCI GGATG 1 cut(s) 166
BtsI GCAGTG 1 cut(s) 532
BtsIMutI CAGTG 5 cut(s) 36, 132, 304, 366, 532
Cac8I GCNNGC 1 cut(s) 258
CseI GACGC 1 cut(s) 220
Csp6I GTAC 1 cut(s) 410
CviAII CATG 1 cut(s) 493
CviJI RGCY 8 cut(s) 109, 208, 248, 274, 310, 334, 467, 575
CviKI_1 RGCY 8 cut(s) 109, 208, 248, 274, 310, 334, 467, 575
CviQI GTAC 1 cut(s) 410
DdeI CTNAG 3 cut(s) 275, 312, 518
DpnI GATC 2 cut(s) 42, 240
DpnII GATC 2 cut(s) 40, 238
DrdI GACNNNNNNGTC 1 cut(s) 122
DseDI GACNNNNNNGTC 1 cut(s) 122
Eco147I AGGCCT 1 cut(s) 109
Eco24I GRGCYC 1 cut(s) 250
Eco91I GGTNACC 1 cut(s) 56
EcoO65I GGTNACC 1 cut(s) 56
EcoRI GAATTC 1 cut(s) 484
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 250
Esp3I CGTCTC 2 cut(s) 38, 367
FaeI CATG 1 cut(s) 496
FaiI YATR 6 cut(s) 141, 237, 264, 425, 494, 515
FatI CATG 1 cut(s) 492
FblI GTMKAC 1 cut(s) 420
Fnu4HI GCNGC 1 cut(s) 454
FokI GGATG 1 cut(s) 153
FriOI GRGCYC 1 cut(s) 250
Fsp4HI GCNGC 1 cut(s) 454
GluI GCNGC 1 cut(s) 454
GsuI CTGGAG 1 cut(s) 342
HaeIII GGCC 2 cut(s) 109, 310
HapII CCGG 2 cut(s) 244, 370
HgaI GACGC 1 cut(s) 220
Hin1II CATG 1 cut(s) 496
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HinfI GANTC 5 cut(s) 48, 146, 152, 366, 473
HpaII CCGG 2 cut(s) 244, 370
Hpy166II GTNNAC 3 cut(s) 304, 351, 421
Hpy188I TCNGA 2 cut(s) 151, 216
Hpy188III TCNNGA 1 cut(s) 370
Hpy8I GTNNAC 3 cut(s) 304, 351, 421
HpyCH4III ACNGT 2 cut(s) 136, 429
HpyCH4IV ACGT 1 cut(s) 31
HpyCH4V TGCA 7 cut(s) 4, 201, 304, 432, 453, 532, 537
HpyF3I CTNAG 3 cut(s) 275, 312, 518
HpySE526I ACGT 1 cut(s) 31
Hsp92II CATG 1 cut(s) 496
Kpn2I TCCGGA 1 cut(s) 369
Kzo9I GATC 2 cut(s) 40, 238
LpnPI CCDG 8 cut(s) 58, 103, 257, 284, 292, 372, 383, 426
Lsp1109I GCAGC 1 cut(s) 465
LweI GCATC 2 cut(s) 172, 519
MaeII ACGT 1 cut(s) 31
MaeIII GTNAC 1 cut(s) 56
MalI GATC 2 cut(s) 42, 240
MboI GATC 2 cut(s) 40, 238
MboII GAAGA 3 cut(s) 88, 94, 190
MhlI GDGCHC 2 cut(s) 250, 306
MluCI AATT 4 cut(s) 9, 289, 433, 484
MluI ACGCGT 1 cut(s) 229
MlyI GAGTC 1 cut(s) 360
MnlI CCTC 7 cut(s) 64, 167, 219, 387, 492, 501, 515
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 369
MseI TTAA 2 cut(s) 174, 183
MspI CCGG 2 cut(s) 244, 370
MspR9I CCNGG 1 cut(s) 245
Mva1269I GAATGC 1 cut(s) 4
MvnI CGCG 1 cut(s) 231
NciI CCSGG 1 cut(s) 245
NdeII GATC 2 cut(s) 40, 238
NlaIII CATG 1 cut(s) 496
NlaIV GGNNCC 1 cut(s) 547
NsiI ATGCAT 1 cut(s) 6
NspV TTCGAA 1 cut(s) 323
PceI AGGCCT 1 cut(s) 109
PctI GAATGC 1 cut(s) 4
PfeI GAWTC 4 cut(s) 48, 146, 152, 473
PkrI GCNGC 1 cut(s) 455
PleI GAGTC 1 cut(s) 360
PpsI GAGTC 1 cut(s) 360
PshBI ATTAAT 1 cut(s) 183
PspEI GGTNACC 1 cut(s) 56
PspN4I GGNNCC 1 cut(s) 547
PstI CTGCAG 1 cut(s) 203
RsaI GTAC 1 cut(s) 411
RsaNI GTAC 1 cut(s) 410
SalI GTCGAC 1 cut(s) 419
SaqAI TTAA 2 cut(s) 174, 183
SatI GCNGC 1 cut(s) 454
Sau3AI GATC 2 cut(s) 40, 238
SchI GAGTC 1 cut(s) 360
ScrFI CCNGG 1 cut(s) 245
SduI GDGCHC 2 cut(s) 250, 306
SfaNI GCATC 2 cut(s) 172, 519
SfcI CTRYAG 1 cut(s) 199
SfuI TTCGAA 1 cut(s) 323
Sse9I AATT 4 cut(s) 9, 289, 433, 484
SseBI AGGCCT 1 cut(s) 109
StuI AGGCCT 1 cut(s) 109
StyD4I CCNGG 1 cut(s) 243
TaaI ACNGT 2 cut(s) 136, 429
TaiI ACGT 1 cut(s) 34
TaqI TCGA 2 cut(s) 323, 420
TasI AATT 4 cut(s) 9, 289, 433, 484
TfiI GAWTC 4 cut(s) 48, 146, 152, 473
Tru1I TTAA 2 cut(s) 174, 183
Tru9I TTAA 2 cut(s) 174, 183
TscAI CASTG 5 cut(s) 43, 139, 311, 366, 539
TseI GCWGC 1 cut(s) 453
TspDTI ATGAA 1 cut(s) 95
TspGWI ACGGA 1 cut(s) 574
TspRI CASTG 5 cut(s) 43, 139, 311, 366, 539
VneI GTGCAC 1 cut(s) 302
VspI ATTAAT 1 cut(s) 183
XapI RAATTY 1 cut(s) 484
XmiI GTMKAC 1 cut(s) 420
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.