Rorug07G0341000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0014755
Physical Location & Seq
Reverse (-)
37586294 .. 37586605
312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0341000.1

Sequence Viewer

Length: 249 bp
ATGGCTAGAAGGAAGGGTCTTCTGAAGAAGGTGGGAGAGATAACCACTCTTTGTGACATCAAGGCTGCGGTGATCATCTACAACCCTTTTGATGGCGAGCTGGAGGTGTTCCCAAGTCATCTAGAAGTCCGCGAACTGCTGATGAAGTTCCGAGATATGCCGCAGATGGACAAGACAAGAAAGATGGTTGACCAGAAGACATTCTTACTACAGCGAATCGACAAAGTCCGGAGCAGATCAGAAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

9.64

Weight (kDa)

9.66

Isoelectric Point (pI)

54.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 3 - 34 3.5e-09 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014755)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g39000
malus_domestica MD08G1172500.v1.1 MD15G1358100.v1.1
prunus_persica Prupe.1G505500_v2.0.a1
pyrus_communis pycom08g14730 pycom15g32040
rosa_laevigata RLG00000000610
rosa_multiflora Rmu_co7979250.1_g000001 Rmu_ssc0000392.1_g000008
rosa_roxburghii Rroxscaffold_3G00219370
rosa_rugosa Rorug07G0340900 Rorug07G0341000
rosa_samantha Rh7AG495700 Rh7BG467100 Rh7CG513200 Rh7DG480300
rosa_wichuraiana Rw7G041890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 132
AccIII TCCGGA 1 cut(s) 228
AciI CCGC 3 cut(s) 68, 130, 161
AcuI CTGAAG 1 cut(s) 44
AfiI CCNNNNNNNGG 1 cut(s) 92
AluBI AGCT 2 cut(s) 100, 246
AluI AGCT 2 cut(s) 100, 246
Aor13HI TCCGGA 1 cut(s) 228
ApeKI GCWGC 1 cut(s) 65
Asp700I GAANNNNTTC 1 cut(s) 200
AsuHPI GGTGA 1 cut(s) 82
BbsI GAAGAC 2 cut(s) 11, 203
BbvI GCAGC 1 cut(s) 52
BccI CCATC 3 cut(s) 86, 160, 178
BclI TGATCA 1 cut(s) 72
BfaI CTAG 2 cut(s) 6, 122
BfmI CTRYAG 1 cut(s) 209
BisI GCNGC 2 cut(s) 66, 161
BlsI GCNGC 2 cut(s) 67, 162
BpiI GAAGAC 2 cut(s) 11, 203
BpmI CTGGAG 1 cut(s) 122
BsaWI WCCGGW 1 cut(s) 228
Bsc4I CCNNNNNNNGG 1 cut(s) 92
BseAI TCCGGA 1 cut(s) 228
BseLI CCNNNNNNNGG 1 cut(s) 92
BseXI GCAGC 1 cut(s) 52
Bsh1236I CGCG 1 cut(s) 132
BsiSI CCGG 1 cut(s) 229
BslI CCNNNNNNNGG 1 cut(s) 92
Bsp13I TCCGGA 1 cut(s) 228
Bsp143I GATC 2 cut(s) 72, 236
BspACI CCGC 3 cut(s) 68, 130, 161
BspEI TCCGGA 1 cut(s) 228
BspFNI CGCG 1 cut(s) 132
BssMI GATC 2 cut(s) 72, 236
BstC8I GCNNGC 1 cut(s) 98
BstFNI CGCG 1 cut(s) 132
BstKTI GATC 2 cut(s) 75, 239
BstMBI GATC 2 cut(s) 72, 236
BstSFI CTRYAG 1 cut(s) 209
BstUI CGCG 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 52
BstV2I GAAGAC 2 cut(s) 11, 203
Cac8I GCNNGC 1 cut(s) 98
CviJI RGCY 4 cut(s) 5, 65, 100, 246
CviKI_1 RGCY 4 cut(s) 5, 65, 100, 246
DpnI GATC 2 cut(s) 74, 238
DpnII GATC 2 cut(s) 72, 236
Eco57I CTGAAG 1 cut(s) 44
FaiI YATR 1 cut(s) 158
FalI AAGNNNNNCTT 2 cut(s) 188, 220
FbaI TGATCA 1 cut(s) 72
Fnu4HI GCNGC 2 cut(s) 66, 161
Fsp4HI GCNGC 2 cut(s) 66, 161
FspBI CTAG 2 cut(s) 6, 122
GluI GCNGC 2 cut(s) 66, 161
GsuI CTGGAG 1 cut(s) 122
HapII CCGG 1 cut(s) 229
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HinfI GANTC 1 cut(s) 216
HpaII CCGG 1 cut(s) 229
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 3 cut(s) 24, 152, 241
Hpy188III TCNNGA 2 cut(s) 122, 229
Hpy8I GTNNAC 1 cut(s) 190
HpyAV CCTTC 3 cut(s) 3, 7, 22
Kpn2I TCCGGA 1 cut(s) 228
Ksp22I TGATCA 1 cut(s) 72
Kzo9I GATC 2 cut(s) 72, 236
LmnI GCTCC 1 cut(s) 231
LpnPI CCDG 3 cut(s) 86, 206, 242
Lsp1109I GCAGC 1 cut(s) 52
MaeI CTAG 2 cut(s) 6, 122
MaeIII GTNAC 1 cut(s) 53
MalI GATC 2 cut(s) 74, 238
MboI GATC 2 cut(s) 72, 236
MboII GAAGA 3 cut(s) 11, 37, 208
MnlI CCTC 1 cut(s) 97
MroI TCCGGA 1 cut(s) 228
MroXI GAANNNNTTC 1 cut(s) 200
MspI CCGG 1 cut(s) 229
MvnI CGCG 1 cut(s) 132
NdeII GATC 2 cut(s) 72, 236
NmuCI GTSAC 1 cut(s) 53
PdmI GAANNNNTTC 1 cut(s) 200
PfeI GAWTC 1 cut(s) 216
PflFI GACNNNGTC 1 cut(s) 224
PkrI GCNGC 2 cut(s) 67, 162
PsyI GACNNNGTC 1 cut(s) 224
SatI GCNGC 2 cut(s) 66, 161
Sau3AI GATC 2 cut(s) 72, 236
SetI ASST 4 cut(s) 33, 102, 108, 248
SfcI CTRYAG 1 cut(s) 209
SsiI CCGC 3 cut(s) 68, 130, 161
SspMI CTAG 2 cut(s) 6, 122
TaqI TCGA 1 cut(s) 219
TauI GCSGC 1 cut(s) 163
TfiI GAWTC 1 cut(s) 216
TseFI GTSAC 1 cut(s) 53
TseI GCWGC 1 cut(s) 65
Tsp45I GTSAC 1 cut(s) 53
TspDTI ATGAA 1 cut(s) 158
Tth111I GACNNNGTC 1 cut(s) 224
XbaI TCTAGA 1 cut(s) 121
XmnI GAANNNNTTC 1 cut(s) 200
XspI CTAG 2 cut(s) 6, 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.