RLG00000000610

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0014755
Physical Location & Seq
Forward (+)
2569069 .. 2570449
1381 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000610

Sequence Viewer

Length: 438 bp
ATGCATTCAATTCAATCACAAGCACAAGCGCAAGCACGTCTCACTGATCCCAGAATCAAGGGTAACCAAGAGTTAGAGGAGAAGATGAAGAATAATAATGACACAAAAGTAAGGCCTAACAACAGGGAAGTCATCATCACTGTCTATGTTGAATCAGATTCCCTCTCGCATCATCCCATTAAGAAGATTAATCCCAACACAGTCTGCAGAAAGCCTCATCAGACGGCGACAACACGCATCTATGATCGCCGGGCTCATCTGCTTGCTTATGTTCAAGAGCTAAGAAAAACTGCTAATTCCCAACAGGTGCACTGGCCTAAGAATGGCTCAAAGCCTAAGCACAAGGATACTGCACACATACCCCCACAAGCATCTGGAGTTGCAGGCACAACCACCTTAATTCGGAAAACAACTCCCAACCTCAATAAGCTTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.49

Weight (kDa)

10.25

Isoelectric Point (pI)

36.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014755)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g39000
malus_domestica MD08G1172500.v1.1 MD15G1358100.v1.1
prunus_persica Prupe.1G505500_v2.0.a1
pyrus_communis pycom08g14730 pycom15g32040
rosa_laevigata RLG00000000610
rosa_multiflora Rmu_co7979250.1_g000001 Rmu_ssc0000392.1_g000008
rosa_roxburghii Rroxscaffold_3G00219370
rosa_rugosa Rorug07G0340900 Rorug07G0341000
rosa_samantha Rh7AG495700 Rh7BG467100 Rh7CG513200 Rh7DG480300
rosa_wichuraiana Rw7G041890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 41
AfiI CCNNNNNNNGG 2 cut(s) 323, 402
AgsI TTSAA 5 cut(s) 9, 14, 152, 275, 434
AjiI CACGTC 1 cut(s) 38
AluBI AGCT 2 cut(s) 280, 430
AluI AGCT 2 cut(s) 280, 430
Alw21I GWGCWC 1 cut(s) 312
Alw26I GTCTC 1 cut(s) 44
Alw44I GTGCAC 1 cut(s) 308
AlwI GGATC 1 cut(s) 41
AoxI GGCC 2 cut(s) 113, 314
ApaLI GTGCAC 1 cut(s) 308
AseI ATTAAT 1 cut(s) 189
AspLEI GCGC 1 cut(s) 31
AsuC2I CCSGG 1 cut(s) 251
BaeGI GKGCMC 1 cut(s) 312
BanII GRGCYC 1 cut(s) 256
Bbv12I GWGCWC 1 cut(s) 312
BceAI ACGGC 1 cut(s) 240
BciVI GTATCC 1 cut(s) 340
BcnI CCSGG 1 cut(s) 251
BcoDI GTCTC 1 cut(s) 44
BfmI CTRYAG 1 cut(s) 205
BfuI GTATCC 1 cut(s) 340
Bme1390I CCNGG 1 cut(s) 251
BmgBI CACGTC 1 cut(s) 38
BmrFI CCNGG 1 cut(s) 251
BmsI GCATC 3 cut(s) 178, 246, 380
BpmI CTGGAG 1 cut(s) 396
Bpu10I CCTNAGC 1 cut(s) 336
BpuMI CCSGG 1 cut(s) 251
Bsc4I CCNNNNNNNGG 2 cut(s) 323, 402
Bse1I ACTGG 1 cut(s) 317
BseGI GGATG 1 cut(s) 172
BseLI CCNNNNNNNGG 2 cut(s) 323, 402
BseNI ACTGG 1 cut(s) 317
BseRI GAGGAG 1 cut(s) 92
BseSI GKGCMC 1 cut(s) 312
BsgI GTGCAG 1 cut(s) 336
BshFI GGCC 2 cut(s) 115, 316
BsiHKAI GWGCWC 1 cut(s) 312
BsiSI CCGG 1 cut(s) 250
BslI CCNNNNNNNGG 2 cut(s) 323, 402
BsmAI GTCTC 1 cut(s) 44
BsmBI CGTCTC 1 cut(s) 44
BsmI GAATGC 1 cut(s) 4
BsnI GGCC 2 cut(s) 115, 316
Bsp1286I GDGCHC 2 cut(s) 256, 312
Bsp143I GATC 2 cut(s) 46, 244
BspANI GGCC 2 cut(s) 115, 316
BspMAI CTGCAG 1 cut(s) 209
BspPI GGATC 1 cut(s) 41
BsrI ACTGG 1 cut(s) 317
BssMI GATC 2 cut(s) 46, 244
Bst4CI ACNGT 2 cut(s) 142, 202
BstC8I GCNNGC 3 cut(s) 33, 264, 385
BstDEI CTNAG 3 cut(s) 281, 318, 336
BstEII GGTNACC 1 cut(s) 62
BstF5I GGATG 1 cut(s) 172
BstHHI GCGC 1 cut(s) 31
BstKTI GATC 2 cut(s) 49, 247
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 2 cut(s) 46, 244
BstPI GGTNACC 1 cut(s) 62
BstSCI CCNGG 1 cut(s) 249
BstSFI CTRYAG 1 cut(s) 205
BstSLI GKGCMC 1 cut(s) 312
BsuI GTATCC 1 cut(s) 340
BsuRI GGCC 2 cut(s) 115, 316
BtrI CACGTC 1 cut(s) 38
BtsCI GGATG 1 cut(s) 172
BtsIMutI CAGTG 3 cut(s) 42, 138, 310
Cac8I GCNNGC 3 cut(s) 33, 264, 385
CfoI GCGC 1 cut(s) 31
CviJI RGCY 8 cut(s) 115, 214, 254, 280, 316, 327, 334, 430
CviKI_1 RGCY 8 cut(s) 115, 214, 254, 280, 316, 327, 334, 430
DdeI CTNAG 3 cut(s) 281, 318, 336
DpnI GATC 2 cut(s) 48, 246
DpnII GATC 2 cut(s) 46, 244
Eco147I AGGCCT 1 cut(s) 115
Eco24I GRGCYC 1 cut(s) 256
Eco91I GGTNACC 1 cut(s) 62
EcoO65I GGTNACC 1 cut(s) 62
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 256
Esp3I CGTCTC 1 cut(s) 44
FaiI YATR 4 cut(s) 147, 243, 270, 359
FokI GGATG 1 cut(s) 159
FriOI GRGCYC 1 cut(s) 256
GlaI GCGC 1 cut(s) 30
GsuI CTGGAG 1 cut(s) 396
HaeIII GGCC 2 cut(s) 115, 316
HapII CCGG 1 cut(s) 250
HhaI GCGC 1 cut(s) 31
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HindIII AAGCTT 1 cut(s) 428
HinfI GANTC 3 cut(s) 54, 152, 158
HpaII CCGG 1 cut(s) 250
Hpy166II GTNNAC 1 cut(s) 310
Hpy188I TCNGA 3 cut(s) 157, 222, 405
Hpy188III TCNNGA 2 cut(s) 275, 375
Hpy8I GTNNAC 1 cut(s) 310
HpyCH4III ACNGT 2 cut(s) 142, 202
HpyCH4IV ACGT 1 cut(s) 37
HpyCH4V TGCA 5 cut(s) 4, 207, 310, 353, 383
HpyF3I CTNAG 3 cut(s) 281, 318, 336
HpySE526I ACGT 1 cut(s) 37
HspAI GCGC 1 cut(s) 29
Kzo9I GATC 2 cut(s) 46, 244
LpnPI CCDG 7 cut(s) 64, 109, 263, 290, 298, 360, 369
LweI GCATC 3 cut(s) 178, 246, 380
MaeII ACGT 1 cut(s) 37
MaeIII GTNAC 1 cut(s) 62
MalI GATC 2 cut(s) 48, 246
MboI GATC 2 cut(s) 46, 244
MboII GAAGA 3 cut(s) 94, 100, 196
MhlI GDGCHC 2 cut(s) 256, 312
MluCI AATT 3 cut(s) 9, 295, 399
MnlI CCTC 4 cut(s) 70, 173, 225, 431
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 3 cut(s) 180, 189, 398
MspI CCGG 1 cut(s) 250
MspR9I CCNGG 1 cut(s) 251
Mva1269I GAATGC 1 cut(s) 4
NciI CCSGG 1 cut(s) 251
NdeII GATC 2 cut(s) 46, 244
NsiI ATGCAT 1 cut(s) 6
PceI AGGCCT 1 cut(s) 115
PctI GAATGC 1 cut(s) 4
PfeI GAWTC 3 cut(s) 54, 152, 158
PshBI ATTAAT 1 cut(s) 189
PspEI GGTNACC 1 cut(s) 62
PstI CTGCAG 1 cut(s) 209
SaqAI TTAA 3 cut(s) 180, 189, 398
Sau3AI GATC 2 cut(s) 46, 244
ScrFI CCNGG 1 cut(s) 251
SduI GDGCHC 2 cut(s) 256, 312
SetI ASST 6 cut(s) 40, 282, 309, 398, 423, 432
SfaNI GCATC 3 cut(s) 178, 246, 380
SfcI CTRYAG 1 cut(s) 205
Sse9I AATT 3 cut(s) 9, 295, 399
SseBI AGGCCT 1 cut(s) 115
StuI AGGCCT 1 cut(s) 115
StyD4I CCNGG 1 cut(s) 249
TaaI ACNGT 2 cut(s) 142, 202
TaiI ACGT 1 cut(s) 40
TasI AATT 3 cut(s) 9, 295, 399
TfiI GAWTC 3 cut(s) 54, 152, 158
Tru1I TTAA 3 cut(s) 180, 189, 398
Tru9I TTAA 3 cut(s) 180, 189, 398
TscAI CASTG 3 cut(s) 49, 145, 317
TspDTI ATGAA 1 cut(s) 101
TspRI CASTG 3 cut(s) 49, 145, 317
VneI GTGCAC 1 cut(s) 308
VspI ATTAAT 1 cut(s) 189
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.