Rw7G041890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0014755
Physical Location & Seq
Reverse (-)
65502709 .. 65503460
752 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G041890.1

Sequence Viewer

Length: 582 bp
ATGAAGAATAATAATGACACAAAAGTAAGGCCTAACAACAGGGAAGTCATCATCACTGTCTATGTTGAATCAGATTCCCTCTCGCATCATCCCATTAAGAAGATTAATCCCAACACAATCTGCAGAAAGCCTCATCAGACTGCGACAACACGCATCTATGATCGCCGGGCTCATCTGCTTGCTTATGCTCAAGAGCTAAGAAAAACTGCTAATTCCCAACAGGTGCACTGGCCTAAGAATGGCTCAAAGCCTAAGCACAAGCTAAATAGAAATAGGTTCACAACTCCAGTGAGACTCCGGAGACCAAAAGGTAGCAGATGGAGGTATCAGCGATTAGTACCAGAAGTCGACATACCGTGCAATTCCAAATGGAACAGTTGCAGCAACAGAAAGGCTACCGAATCAAAAAGGAATTCGAACATGATGGTACATTATAAACATGTCGATCAATCTTTTTCCACATTCTCCGTTTCTAGGTATGCATCATGCACATGTGTTAATGCATGTATCTGTGTGTATACAGAGGAAGTTGAGGCGTATGCTGAGAGGATTGATGCACTGCAACAAAGGTTCCCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

22.62

Weight (kDa)

10.06

Isoelectric Point (pI)

52.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014755)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g39000
malus_domestica MD08G1172500.v1.1 MD15G1358100.v1.1
prunus_persica Prupe.1G505500_v2.0.a1
pyrus_communis pycom08g14730 pycom15g32040
rosa_laevigata RLG00000000610
rosa_multiflora Rmu_co7979250.1_g000001 Rmu_ssc0000392.1_g000008
rosa_roxburghii Rroxscaffold_3G00219370
rosa_rugosa Rorug07G0340900 Rorug07G0341000
rosa_samantha Rh7AG495700 Rh7BG467100 Rh7CG513200 Rh7DG480300
rosa_wichuraiana Rw7G041890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 435
AccI GTMKAC 2 cut(s) 348, 518
AccIII TCCGGA 1 cut(s) 297
AcsI RAATTY 1 cut(s) 412
AfaI GTAC 2 cut(s) 339, 429
AfiI CCNNNNNNNGG 2 cut(s) 239, 474
AflIII ACRYGT 2 cut(s) 439, 491
AgsI TTSAA 1 cut(s) 68
AluBI AGCT 2 cut(s) 196, 262
AluI AGCT 2 cut(s) 196, 262
Alw21I GWGCWC 1 cut(s) 228
Alw26I GTCTC 2 cut(s) 286, 295
Alw44I GTGCAC 1 cut(s) 224
Aor13HI TCCGGA 1 cut(s) 297
AoxI GGCC 2 cut(s) 29, 230
ApaLI GTGCAC 1 cut(s) 224
ApeKI GCWGC 1 cut(s) 381
ApoI RAATTY 1 cut(s) 412
AseI ATTAAT 1 cut(s) 105
AsuC2I CCSGG 1 cut(s) 167
AsuII TTCGAA 1 cut(s) 416
BaeGI GKGCMC 1 cut(s) 228
BanII GRGCYC 1 cut(s) 172
BarI GAAGNNNNNNTAC 2 cut(s) 336, 368
Bbv12I GWGCWC 1 cut(s) 228
BbvI GCAGC 1 cut(s) 393
BccI CCATC 2 cut(s) 312, 418
BcnI CCSGG 1 cut(s) 167
BcoDI GTCTC 2 cut(s) 286, 295
BfaI CTAG 1 cut(s) 474
BfmI CTRYAG 1 cut(s) 121
BisI GCNGC 1 cut(s) 382
BlsI GCNGC 1 cut(s) 383
Bme1390I CCNGG 1 cut(s) 167
BmiI GGNNCC 1 cut(s) 572
BmrFI CCNGG 1 cut(s) 167
BmsI GCATC 4 cut(s) 94, 162, 491, 544
BpmI CTGGAG 1 cut(s) 270
Bpu10I CCTNAGC 1 cut(s) 252
Bpu14I TTCGAA 1 cut(s) 416
BpuEI CTTGAG 1 cut(s) 174
BpuMI CCSGG 1 cut(s) 167
BsaI GGTCTC 1 cut(s) 295
BsaWI WCCGGW 1 cut(s) 297
Bsc4I CCNNNNNNNGG 2 cut(s) 239, 474
Bse1I ACTGG 2 cut(s) 233, 287
BseAI TCCGGA 1 cut(s) 297
BseGI GGATG 1 cut(s) 88
BseLI CCNNNNNNNGG 2 cut(s) 239, 474
BseMII CTCAG 1 cut(s) 534
BseNI ACTGG 2 cut(s) 233, 287
BseSI GKGCMC 1 cut(s) 228
BseXI GCAGC 1 cut(s) 393
BshFI GGCC 2 cut(s) 31, 232
BsiHKAI GWGCWC 1 cut(s) 228
BsiSI CCGG 2 cut(s) 166, 298
BslI CCNNNNNNNGG 2 cut(s) 239, 474
BsmAI GTCTC 2 cut(s) 286, 295
BsnI GGCC 2 cut(s) 31, 232
Bso31I GGTCTC 1 cut(s) 295
Bsp119I TTCGAA 1 cut(s) 416
Bsp1286I GDGCHC 2 cut(s) 172, 228
Bsp13I TCCGGA 1 cut(s) 297
Bsp143I GATC 2 cut(s) 160, 445
BspANI GGCC 2 cut(s) 31, 232
BspCNI CTCAG 1 cut(s) 535
BspEI TCCGGA 1 cut(s) 297
BspLI GGNNCC 1 cut(s) 572
BspMAI CTGCAG 1 cut(s) 125
BspT104I TTCGAA 1 cut(s) 416
BspTNI GGTCTC 1 cut(s) 295
BsrI ACTGG 2 cut(s) 233, 287
BssMI GATC 2 cut(s) 160, 445
BssNAI GTATAC 1 cut(s) 519
Bst1107I GTATAC 1 cut(s) 519
Bst4CI ACNGT 3 cut(s) 58, 357, 377
BstBI TTCGAA 1 cut(s) 416
BstC8I GCNNGC 1 cut(s) 180
BstDEI CTNAG 4 cut(s) 197, 234, 252, 543
BstF5I GGATG 1 cut(s) 88
BstKTI GATC 2 cut(s) 163, 448
BstMAI GTCTC 2 cut(s) 286, 295
BstMBI GATC 2 cut(s) 160, 445
BstNSI RCATGY 3 cut(s) 443, 495, 507
BstSCI CCNGG 1 cut(s) 165
BstSFI CTRYAG 1 cut(s) 121
BstSLI GKGCMC 1 cut(s) 228
BstV1I GCAGC 1 cut(s) 393
BstZ17I GTATAC 1 cut(s) 519
BsuRI GGCC 2 cut(s) 31, 232
BtsCI GGATG 1 cut(s) 88
BtsI GCAGTG 1 cut(s) 557
BtsIMutI CAGTG 4 cut(s) 54, 226, 294, 557
Cac8I GCNNGC 1 cut(s) 180
Csp6I GTAC 2 cut(s) 338, 428
CviAII CATG 5 cut(s) 421, 440, 486, 492, 504
CviJI RGCY 9 cut(s) 31, 130, 170, 196, 232, 243, 250, 262, 395
CviKI_1 RGCY 9 cut(s) 31, 130, 170, 196, 232, 243, 250, 262, 395
CviQI GTAC 2 cut(s) 338, 428
DdeI CTNAG 4 cut(s) 197, 234, 252, 543
DpnI GATC 2 cut(s) 162, 447
DpnII GATC 2 cut(s) 160, 445
Eco147I AGGCCT 1 cut(s) 31
Eco24I GRGCYC 1 cut(s) 172
Eco31I GGTCTC 1 cut(s) 295
EcoRI GAATTC 1 cut(s) 412
EcoT22I ATGCAT 2 cut(s) 484, 505
EcoT38I GRGCYC 1 cut(s) 172
FaeI CATG 5 cut(s) 424, 443, 489, 495, 507
FatI CATG 5 cut(s) 420, 439, 485, 491, 503
FblI GTMKAC 2 cut(s) 348, 518
Fnu4HI GCNGC 1 cut(s) 382
FokI GGATG 1 cut(s) 75
FriOI GRGCYC 1 cut(s) 172
Fsp4HI GCNGC 1 cut(s) 382
FspBI CTAG 1 cut(s) 474
GluI GCNGC 1 cut(s) 382
GsuI CTGGAG 1 cut(s) 270
HaeIII GGCC 2 cut(s) 31, 232
HapII CCGG 2 cut(s) 166, 298
Hin1II CATG 5 cut(s) 424, 443, 489, 495, 507
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HinfI GANTC 4 cut(s) 68, 74, 294, 401
HpaII CCGG 2 cut(s) 166, 298
Hpy166II GTNNAC 4 cut(s) 226, 279, 349, 519
Hpy188I TCNGA 2 cut(s) 73, 138
Hpy188III TCNNGA 2 cut(s) 191, 298
Hpy8I GTNNAC 4 cut(s) 226, 279, 349, 519
HpyCH4III ACNGT 3 cut(s) 58, 357, 377
HpyCH4V TGCA 9 cut(s) 123, 226, 360, 381, 482, 489, 503, 557, 562
HpyF3I CTNAG 4 cut(s) 197, 234, 252, 543
Hsp92II CATG 5 cut(s) 424, 443, 489, 495, 507
Kpn2I TCCGGA 1 cut(s) 297
Kzo9I GATC 2 cut(s) 160, 445
LpnPI CCDG 7 cut(s) 25, 179, 206, 214, 300, 311, 354
Lsp1109I GCAGC 1 cut(s) 393
LweI GCATC 4 cut(s) 94, 162, 491, 544
MaeI CTAG 1 cut(s) 474
MalI GATC 2 cut(s) 162, 447
MboI GATC 2 cut(s) 160, 445
MboII GAAGA 2 cut(s) 16, 112
MhlI GDGCHC 2 cut(s) 172, 228
MluCI AATT 3 cut(s) 211, 361, 412
MlyI GAGTC 1 cut(s) 288
MnlI CCTC 6 cut(s) 89, 141, 315, 517, 526, 540
Mph1103I ATGCAT 2 cut(s) 484, 505
MroI TCCGGA 1 cut(s) 297
MseI TTAA 3 cut(s) 96, 105, 498
MslI CAYNNNNRTG 1 cut(s) 490
MspI CCGG 2 cut(s) 166, 298
MspR9I CCNGG 1 cut(s) 167
NciI CCSGG 1 cut(s) 167
NdeII GATC 2 cut(s) 160, 445
NlaIII CATG 5 cut(s) 424, 443, 489, 495, 507
NlaIV GGNNCC 1 cut(s) 572
NsiI ATGCAT 2 cut(s) 484, 505
NspI RCATGY 3 cut(s) 443, 495, 507
NspV TTCGAA 1 cut(s) 416
PceI AGGCCT 1 cut(s) 31
PciI ACATGT 2 cut(s) 439, 491
PfeI GAWTC 3 cut(s) 68, 74, 401
PkrI GCNGC 1 cut(s) 383
PleI GAGTC 1 cut(s) 288
PpsI GAGTC 1 cut(s) 288
PscI ACATGT 2 cut(s) 439, 491
PshBI ATTAAT 1 cut(s) 105
PsiI TTATAA 1 cut(s) 435
PspN4I GGNNCC 1 cut(s) 572
PstI CTGCAG 1 cut(s) 125
RsaI GTAC 2 cut(s) 339, 429
RsaNI GTAC 2 cut(s) 338, 428
RseI CAYNNNNRTG 1 cut(s) 490
SalI GTCGAC 1 cut(s) 347
SaqAI TTAA 3 cut(s) 96, 105, 498
SatI GCNGC 1 cut(s) 382
Sau3AI GATC 2 cut(s) 160, 445
SchI GAGTC 1 cut(s) 288
ScrFI CCNGG 1 cut(s) 167
SduI GDGCHC 2 cut(s) 172, 228
SetI ASST 8 cut(s) 198, 225, 264, 278, 313, 326, 479, 572
SfaNI GCATC 4 cut(s) 94, 162, 491, 544
SfcI CTRYAG 1 cut(s) 121
SfuI TTCGAA 1 cut(s) 416
SmiMI CAYNNNNRTG 1 cut(s) 490
SmlI CTYRAG 1 cut(s) 189
SmoI CTYRAG 1 cut(s) 189
Sse9I AATT 3 cut(s) 211, 361, 412
SseBI AGGCCT 1 cut(s) 31
SspMI CTAG 1 cut(s) 474
StuI AGGCCT 1 cut(s) 31
StyD4I CCNGG 1 cut(s) 165
TaaI ACNGT 3 cut(s) 58, 357, 377
TaqI TCGA 3 cut(s) 348, 416, 444
TasI AATT 3 cut(s) 211, 361, 412
TfiI GAWTC 3 cut(s) 68, 74, 401
Tru1I TTAA 3 cut(s) 96, 105, 498
Tru9I TTAA 3 cut(s) 96, 105, 498
TscAI CASTG 4 cut(s) 61, 233, 294, 564
TseI GCWGC 1 cut(s) 381
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 457
TspRI CASTG 4 cut(s) 61, 233, 294, 564
VneI GTGCAC 1 cut(s) 224
VspI ATTAAT 1 cut(s) 105
XapI RAATTY 1 cut(s) 412
XceI RCATGY 3 cut(s) 443, 495, 507
XmiI GTMKAC 2 cut(s) 348, 518
XspI CTAG 1 cut(s) 474
Zsp2I ATGCAT 2 cut(s) 484, 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.