Prupe.1G505500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014755
Physical Location & Seq
Forward (+)
41752621 .. 41753768
1148 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G505500.1

Sequence Viewer

Length: 603 bp
ATGATTCAATCACAAGCAAAACCACATCCCAAAACCATGGCTAAACAAGAGTTGGAGAAAGAGGAGGAGGAGGAGAAGAAGAAGAATGGCACAAAAGAGAGGCCTAACAAGAAGGAAGTCATCATCACCGTCTATGTTGAATCACCATCACCATCATCAGCTTCCCATTCCCATCAGAAAACTGATCAGTTTAAGAAGATTAAGCCCAACCAGAACTCCCGGAAGCCTCATCAGATGGCAAAAACAGGCGGCTATGATCGCCGGGCTCACCTCCTTGCTTATGCTCAAGAGCTAAGAACAACTGGTGGTTCCCAGCAGGTGCAATGGCCTAAGAGTGGTTCAAAGCCTAAGCTGAGGGTGGGTGGCAAAAGGTTCACAACTCCAGTGAGACTCAGAAGAACAAAAAACAAATGGAGATATCAGCGCTTAGTCCCAGAAGTAGACATATCGTGCAATCCCAAATCCATCATTTGCGGGAACAAAAAGGCCACTGGATCAGAACCCAATTCTAACTTTTTGAGGAAATTAAGGGGTGTAGTGAAAGGATTGTCATGGCACTGCAACAAAGGGTCCAAAGTGGCTGAGAAAAATCATGCTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

22.73

Weight (kDa)

10.31

Isoelectric Point (pI)

50.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014755)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g39000
malus_domestica MD08G1172500.v1.1 MD15G1358100.v1.1
prunus_persica Prupe.1G505500_v2.0.a1
pyrus_communis pycom08g14730 pycom15g32040
rosa_laevigata RLG00000000610
rosa_multiflora Rmu_co7979250.1_g000001 Rmu_ssc0000392.1_g000008
rosa_roxburghii Rroxscaffold_3G00219370
rosa_rugosa Rorug07G0340900 Rorug07G0341000
rosa_samantha Rh7AG495700 Rh7BG467100 Rh7CG513200 Rh7DG480300
rosa_wichuraiana Rw7G041890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 307
Acc36I ACCTGC 1 cut(s) 307
AccI GTMKAC 1 cut(s) 441
AciI CCGC 2 cut(s) 249, 474
AclWI GGATC 1 cut(s) 502
AfeI AGCGCT 1 cut(s) 425
AfiI CCNNNNNNNGG 1 cut(s) 335
AgsI TTSAA 3 cut(s) 8, 140, 342
AluBI AGCT 3 cut(s) 161, 292, 352
AluI AGCT 3 cut(s) 161, 292, 352
Alw26I GTCTC 1 cut(s) 382
AlwI GGATC 1 cut(s) 502
Aor51HI AGCGCT 1 cut(s) 425
AoxI GGCC 3 cut(s) 101, 326, 486
AspLEI GCGC 1 cut(s) 426
AspS9I GGNCC 1 cut(s) 570
AsuC2I CCSGG 2 cut(s) 220, 263
AsuHPI GGTGA 4 cut(s) 118, 135, 141, 260
AvaII GGWCC 1 cut(s) 570
BanII GRGCYC 1 cut(s) 268
BbvCI CCTCAGC 1 cut(s) 353
BccI CCATC 5 cut(s) 154, 160, 180, 229, 473
BclI TGATCA 1 cut(s) 184
BcnI CCSGG 2 cut(s) 220, 263
BcoDI GTCTC 1 cut(s) 382
BfoI RGCGCY 1 cut(s) 427
BfuAI ACCTGC 1 cut(s) 307
BisI GCNGC 1 cut(s) 250
BlsI GCNGC 1 cut(s) 251
Bme1390I CCNGG 2 cut(s) 220, 263
Bme18I GGWCC 1 cut(s) 570
BmgT120I GGNCC 1 cut(s) 570
BmiI GGNNCC 2 cut(s) 310, 571
BmrFI CCNGG 2 cut(s) 220, 263
BpmI CTGGAG 1 cut(s) 366
Bpu10I CCTNAGC 2 cut(s) 348, 353
BpuEI CTTGAG 1 cut(s) 270
BpuMI CCSGG 2 cut(s) 220, 263
BsaJI CCNNGG 1 cut(s) 36
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bsc4I CCNNNNNNNGG 1 cut(s) 335
Bse1I ACTGG 3 cut(s) 307, 383, 496
Bse3DI GCAATG 1 cut(s) 329
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 1 cut(s) 25
BseLI CCNNNNNNNGG 1 cut(s) 335
BseMI GCAATG 1 cut(s) 329
BseMII CTCAG 3 cut(s) 344, 406, 573
BseNI ACTGG 3 cut(s) 307, 383, 496
BseRI GAGGAG 4 cut(s) 77, 80, 83, 86
BseYI CCCAGC 1 cut(s) 312
BshFI GGCC 3 cut(s) 103, 328, 488
BsiSI CCGG 2 cut(s) 220, 262
BslFI GGGAC 1 cut(s) 416
BslI CCNNNNNNNGG 1 cut(s) 335
BsmAI GTCTC 1 cut(s) 382
BsmFI GGGAC 1 cut(s) 416
BsnI GGCC 3 cut(s) 103, 328, 488
Bsp1286I GDGCHC 1 cut(s) 268
Bsp143I GATC 3 cut(s) 184, 256, 494
Bsp19I CCATGG 1 cut(s) 36
BspACI CCGC 2 cut(s) 249, 474
BspANI GGCC 3 cut(s) 103, 328, 488
BspCNI CTCAG 3 cut(s) 345, 405, 574
BspLI GGNNCC 2 cut(s) 310, 571
BspMI ACCTGC 1 cut(s) 307
BspPI GGATC 1 cut(s) 502
BsrDI GCAATG 1 cut(s) 329
BsrI ACTGG 3 cut(s) 307, 383, 496
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 3 cut(s) 184, 256, 494
BssT1I CCWWGG 1 cut(s) 36
Bst4CI ACNGT 1 cut(s) 130
BstDEI CTNAG 7 cut(s) 293, 330, 348, 353, 392, 427, 582
BstDSI CCRYGG 1 cut(s) 36
BstF5I GGATG 1 cut(s) 25
BstH2I RGCGCY 1 cut(s) 427
BstHHI GCGC 1 cut(s) 426
BstKTI GATC 3 cut(s) 187, 259, 497
BstMAI GTCTC 1 cut(s) 382
BstMBI GATC 3 cut(s) 184, 256, 494
BstMWI GCNNNNNNNGC 1 cut(s) 258
BstSCI CCNGG 2 cut(s) 218, 261
BstXI CCANNNNNNTGG 1 cut(s) 37
BsuRI GGCC 3 cut(s) 103, 328, 488
BtgI CCRYGG 1 cut(s) 36
BtsCI GGATG 1 cut(s) 25
BtsI GCAGTG 1 cut(s) 556
BtsIMutI CAGTG 3 cut(s) 390, 489, 556
BveI ACCTGC 1 cut(s) 307
CfoI GCGC 1 cut(s) 426
Cfr13I GGNCC 1 cut(s) 570
CviAII CATG 3 cut(s) 37, 552, 593
DdeI CTNAG 7 cut(s) 293, 330, 348, 353, 392, 427, 582
DpnI GATC 3 cut(s) 186, 258, 496
DpnII GATC 3 cut(s) 184, 256, 494
Eco130I CCWWGG 1 cut(s) 36
Eco147I AGGCCT 1 cut(s) 103
Eco24I GRGCYC 1 cut(s) 268
Eco32I GATATC 1 cut(s) 419
Eco47I GGWCC 1 cut(s) 570
Eco47III AGCGCT 1 cut(s) 425
EcoRV GATATC 1 cut(s) 419
EcoT14I CCWWGG 1 cut(s) 36
EcoT38I GRGCYC 1 cut(s) 268
ErhI CCWWGG 1 cut(s) 36
FaeI CATG 3 cut(s) 40, 555, 596
FaiI YATR 7 cut(s) 38, 135, 255, 282, 446, 553, 594
FaqI GGGAC 1 cut(s) 416
FatI CATG 3 cut(s) 36, 551, 592
FauI CCCGC 1 cut(s) 467
FbaI TGATCA 1 cut(s) 184
FblI GTMKAC 1 cut(s) 441
Fnu4HI GCNGC 1 cut(s) 250
FokI GGATG 1 cut(s) 12
FriOI GRGCYC 1 cut(s) 268
Fsp4HI GCNGC 1 cut(s) 250
GlaI GCGC 1 cut(s) 425
GluI GCNGC 1 cut(s) 250
GsaI CCCAGC 1 cut(s) 316
GsuI CTGGAG 1 cut(s) 366
HaeII RGCGCY 1 cut(s) 427
HaeIII GGCC 3 cut(s) 103, 328, 488
HapII CCGG 2 cut(s) 220, 262
HhaI GCGC 1 cut(s) 426
Hin1II CATG 3 cut(s) 40, 555, 596
Hin6I GCGC 1 cut(s) 424
HinP1I GCGC 1 cut(s) 424
HinfI GANTC 3 cut(s) 4, 140, 390
HpaII CCGG 2 cut(s) 220, 262
HphI GGTGA 4 cut(s) 118, 135, 141, 260
Hpy166II GTNNAC 2 cut(s) 375, 442
Hpy188I TCNGA 4 cut(s) 177, 234, 395, 499
Hpy188III TCNNGA 1 cut(s) 287
Hpy8I GTNNAC 2 cut(s) 375, 442
HpyAV CCTTC 1 cut(s) 106
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4V TGCA 3 cut(s) 322, 453, 561
HpyF10VI GCNNNNNNNGC 1 cut(s) 258
HpyF3I CTNAG 7 cut(s) 293, 330, 348, 353, 392, 427, 582
Hsp92II CATG 3 cut(s) 40, 555, 596
HspAI GCGC 1 cut(s) 424
Ksp22I TGATCA 1 cut(s) 184
Kzo9I GATC 3 cut(s) 184, 256, 494
MalI GATC 3 cut(s) 186, 258, 496
MboI GATC 3 cut(s) 184, 256, 494
MboII GAAGA 5 cut(s) 88, 91, 94, 208, 408
MhlI GDGCHC 1 cut(s) 268
MluCI AATT 2 cut(s) 505, 524
MlyI GAGTC 1 cut(s) 384
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 9 cut(s) 55, 58, 61, 64, 93, 237, 281, 348, 513
MseI TTAA 3 cut(s) 192, 201, 527
MspI CCGG 2 cut(s) 220, 262
MspR9I CCNGG 2 cut(s) 220, 263
MwoI GCNNNNNNNGC 1 cut(s) 258
NciI CCSGG 2 cut(s) 220, 263
NcoI CCATGG 1 cut(s) 36
NdeII GATC 3 cut(s) 184, 256, 494
NlaIII CATG 3 cut(s) 40, 555, 596
NlaIV GGNNCC 2 cut(s) 310, 571
PaqCI CACCTGC 1 cut(s) 307
PceI AGGCCT 1 cut(s) 103
PfeI GAWTC 2 cut(s) 4, 140
PfoI TCCNGGA 1 cut(s) 218
PkrI GCNGC 1 cut(s) 251
PleI GAGTC 1 cut(s) 384
PpsI GAGTC 1 cut(s) 384
PspFI CCCAGC 1 cut(s) 312
PspN4I GGNNCC 2 cut(s) 310, 571
PspPI GGNCC 1 cut(s) 570
SaqAI TTAA 3 cut(s) 192, 201, 527
SatI GCNGC 1 cut(s) 250
Sau3AI GATC 3 cut(s) 184, 256, 494
Sau96I GGNCC 1 cut(s) 570
SchI GAGTC 1 cut(s) 384
ScrFI CCNGG 2 cut(s) 220, 263
SduI GDGCHC 1 cut(s) 268
SetI ASST 6 cut(s) 163, 273, 294, 321, 354, 374
SinI GGWCC 1 cut(s) 570
SmlI CTYRAG 1 cut(s) 285
SmoI CTYRAG 1 cut(s) 285
Sse9I AATT 2 cut(s) 505, 524
SseBI AGGCCT 1 cut(s) 103
SsiI CCGC 2 cut(s) 249, 474
StuI AGGCCT 1 cut(s) 103
StyD4I CCNGG 2 cut(s) 218, 261
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 1 cut(s) 130
TasI AATT 2 cut(s) 505, 524
TauI GCSGC 1 cut(s) 252
TfiI GAWTC 2 cut(s) 4, 140
Tru1I TTAA 3 cut(s) 192, 201, 527
Tru9I TTAA 3 cut(s) 192, 201, 527
TscAI CASTG 3 cut(s) 390, 496, 563
TspRI CASTG 3 cut(s) 390, 496, 563
VpaK11BI GGWCC 1 cut(s) 570
XmiI GTMKAC 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.