Rorug07G0340900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0014755
Physical Location & Seq
Reverse (-)
37585786 .. 37586258
473 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0340900.1

Sequence Viewer

Length: 402 bp
ATGTTCGGTTGTTTGATGGGGAGAACACTCTCTAACTTGGAAATGAAGGATCTGCAGGATCTCAATTTTATCATCGAACGCAACCTCAGGGAGCTTGAAATCAAACAGCAGGCTGCTAATGAGAAGAATGCTGATGAGCGGAAGCAGGAGGTAAACCAGGAGAACCAGCTCAACCAGAGGCGTACAGCAACAACACCACCAACCCGCGATGGAGGCGCAGAGCATGGAGCAGTGGTAGTACAAAATGATGCAGGTTGCAGCTCAGAGGCAGCAACATCAGCAGTTGTTCCAGCAACAACCCTGGTTCGTGGACATCATGAACCCACCATCGCCCCAAACGAGGGACTTCTTACACCCATTACCACCGCTTCAGCCATGAGGGTTCGGAGACTACAACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.63

Weight (kDa)

5.92

Isoelectric Point (pI)

45.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014755)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g39000
malus_domestica MD08G1172500.v1.1 MD15G1358100.v1.1
prunus_persica Prupe.1G505500_v2.0.a1
pyrus_communis pycom08g14730 pycom15g32040
rosa_laevigata RLG00000000610
rosa_multiflora Rmu_co7979250.1_g000001 Rmu_ssc0000392.1_g000008
rosa_roxburghii Rroxscaffold_3G00219370
rosa_rugosa Rorug07G0340900 Rorug07G0341000
rosa_samantha Rh7AG495700 Rh7BG467100 Rh7CG513200 Rh7DG480300
rosa_wichuraiana Rw7G041890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 242
AccBSI CCGCTC 1 cut(s) 139
AccII CGCG 1 cut(s) 207
AciI CCGC 3 cut(s) 139, 205, 366
AclWI GGATC 2 cut(s) 57, 66
AcuI CTGAAG 1 cut(s) 354
AfaI GTAC 2 cut(s) 184, 240
AfiI CCNNNNNNNGG 2 cut(s) 340, 341
AgsI TTSAA 1 cut(s) 98
AjnI CCWGG 2 cut(s) 156, 300
AluBI AGCT 3 cut(s) 94, 169, 261
AluI AGCT 3 cut(s) 94, 169, 261
Alw26I GTCTC 1 cut(s) 382
AlwI GGATC 2 cut(s) 57, 66
ApeKI GCWGC 3 cut(s) 113, 258, 269
AspLEI GCGC 1 cut(s) 218
AxyI CCTNAGG 1 cut(s) 86
BbvI GCAGC 3 cut(s) 100, 270, 281
BccI CCATC 3 cut(s) 10, 203, 335
BciT130I CCWGG 2 cut(s) 158, 302
BcoDI GTCTC 1 cut(s) 382
BfmI CTRYAG 1 cut(s) 53
BfuAI ACCTGC 1 cut(s) 242
BisI GCNGC 3 cut(s) 114, 259, 270
BlsI GCNGC 3 cut(s) 115, 260, 271
Bme1390I CCNGG 2 cut(s) 158, 302
BmrFI CCNGG 2 cut(s) 158, 302
BmsI GCATC 1 cut(s) 238
BsaJI CCNNGG 1 cut(s) 300
BsaXI ACNNNNNCTCC 2 cut(s) 219, 249
Bsc4I CCNNNNNNNGG 2 cut(s) 340, 341
Bse21I CCTNAGG 1 cut(s) 86
BseBI CCWGG 2 cut(s) 158, 302
BseDI CCNNGG 1 cut(s) 300
BseLI CCNNNNNNNGG 2 cut(s) 340, 341
BseMII CTCAG 2 cut(s) 100, 276
BseXI GCAGC 3 cut(s) 100, 270, 281
Bsh1236I CGCG 1 cut(s) 207
BslFI GGGAC 1 cut(s) 357
BslI CCNNNNNNNGG 2 cut(s) 340, 341
BsmAI GTCTC 1 cut(s) 382
BsmFI GGGAC 1 cut(s) 357
BsmI GAATGC 1 cut(s) 133
Bsp143I GATC 2 cut(s) 49, 58
BspACI CCGC 3 cut(s) 139, 205, 366
BspCNI CTCAG 2 cut(s) 99, 275
BspFNI CGCG 1 cut(s) 207
BspHI TCATGA 1 cut(s) 316
BspMAI CTGCAG 1 cut(s) 57
BspMI ACCTGC 1 cut(s) 242
BspPI GGATC 2 cut(s) 57, 66
BsrBI CCGCTC 1 cut(s) 139
BssECI CCNNGG 1 cut(s) 300
BssMI GATC 2 cut(s) 49, 58
Bst2UI CCWGG 2 cut(s) 158, 302
Bst4CI ACNGT 1 cut(s) 399
BstC8I GCNNGC 1 cut(s) 111
BstDEI CTNAG 2 cut(s) 86, 262
BstFNI CGCG 1 cut(s) 207
BstHHI GCGC 1 cut(s) 218
BstKTI GATC 2 cut(s) 52, 61
BstMAI GTCTC 1 cut(s) 382
BstMBI GATC 2 cut(s) 49, 58
BstMWI GCNNNNNNNGC 2 cut(s) 213, 278
BstNI CCWGG 2 cut(s) 158, 302
BstSCI CCNGG 2 cut(s) 156, 300
BstSFI CTRYAG 1 cut(s) 53
BstUI CGCG 1 cut(s) 207
BstV1I GCAGC 3 cut(s) 100, 270, 281
BstX2I RGATCY 2 cut(s) 49, 58
BstYI RGATCY 2 cut(s) 49, 58
Bsu36I CCTNAGG 1 cut(s) 86
BtgZI GCGATG 2 cut(s) 222, 313
BtsI GCAGTG 1 cut(s) 237
BtsIMutI CAGTG 1 cut(s) 237
BveI ACCTGC 1 cut(s) 242
Cac8I GCNNGC 1 cut(s) 111
CciI TCATGA 1 cut(s) 316
CfoI GCGC 1 cut(s) 218
Csp6I GTAC 2 cut(s) 183, 239
CviAII CATG 3 cut(s) 224, 317, 376
CviJI RGCY 5 cut(s) 94, 113, 169, 261, 374
CviKI_1 RGCY 5 cut(s) 94, 113, 169, 261, 374
CviQI GTAC 2 cut(s) 183, 239
DdeI CTNAG 2 cut(s) 86, 262
DpnI GATC 2 cut(s) 51, 60
DpnII GATC 2 cut(s) 49, 58
Eco57I CTGAAG 1 cut(s) 354
Eco81I CCTNAGG 1 cut(s) 86
EcoRII CCWGG 2 cut(s) 156, 300
FaeI CATG 3 cut(s) 227, 320, 379
FaiI YATR 3 cut(s) 225, 318, 377
FaqI GGGAC 1 cut(s) 357
FatI CATG 3 cut(s) 223, 316, 375
FauI CCCGC 1 cut(s) 212
Fnu4HI GCNGC 3 cut(s) 114, 259, 270
Fsp4HI GCNGC 3 cut(s) 114, 259, 270
GlaI GCGC 1 cut(s) 217
GluI GCNGC 3 cut(s) 114, 259, 270
HhaI GCGC 1 cut(s) 218
Hin1II CATG 3 cut(s) 227, 320, 379
Hin6I GCGC 1 cut(s) 216
HinP1I GCGC 1 cut(s) 216
Hpy166II GTNNAC 2 cut(s) 154, 311
Hpy188I TCNGA 2 cut(s) 265, 387
Hpy188III TCNNGA 1 cut(s) 317
Hpy8I GTNNAC 2 cut(s) 154, 311
HpyAV CCTTC 1 cut(s) 40
HpyCH4III ACNGT 1 cut(s) 399
HpyCH4V TGCA 3 cut(s) 55, 251, 258
HpyF10VI GCNNNNNNNGC 2 cut(s) 213, 278
HpyF3I CTNAG 2 cut(s) 86, 262
Hsp92II CATG 3 cut(s) 227, 320, 379
HspAI GCGC 1 cut(s) 216
Kzo9I GATC 2 cut(s) 49, 58
LmnI GCTCC 2 cut(s) 91, 227
Lsp1109I GCAGC 3 cut(s) 100, 270, 281
LweI GCATC 1 cut(s) 238
MalI GATC 2 cut(s) 51, 60
MbiI CCGCTC 1 cut(s) 139
MboI GATC 2 cut(s) 49, 58
MboII GAAGA 1 cut(s) 136
MflI RGATCY 2 cut(s) 49, 58
MluCI AATT 1 cut(s) 64
MnlI CCTC 7 cut(s) 95, 142, 171, 206, 259, 334, 372
MspR9I CCNGG 2 cut(s) 158, 302
Mva1269I GAATGC 1 cut(s) 133
MvaI CCWGG 2 cut(s) 158, 302
MvnI CGCG 1 cut(s) 207
MwoI GCNNNNNNNGC 2 cut(s) 213, 278
NdeII GATC 2 cut(s) 49, 58
NlaIII CATG 3 cut(s) 227, 320, 379
PagI TCATGA 1 cut(s) 316
PcsI WCGNNNNNNNCGW 1 cut(s) 336
PctI GAATGC 1 cut(s) 133
PkrI GCNGC 3 cut(s) 115, 260, 271
Psp6I CCWGG 2 cut(s) 156, 300
PspGI CCWGG 2 cut(s) 156, 300
PstI CTGCAG 1 cut(s) 57
PsuI RGATCY 2 cut(s) 49, 58
RsaI GTAC 2 cut(s) 184, 240
RsaNI GTAC 2 cut(s) 183, 239
SatI GCNGC 3 cut(s) 114, 259, 270
Sau3AI GATC 2 cut(s) 49, 58
ScrFI CCNGG 2 cut(s) 158, 302
SetI ASST 6 cut(s) 87, 96, 153, 171, 256, 263
SfaNI GCATC 1 cut(s) 238
SfcI CTRYAG 1 cut(s) 53
Sse9I AATT 1 cut(s) 64
SsiI CCGC 3 cut(s) 139, 205, 366
StyD4I CCNGG 2 cut(s) 156, 300
TaaI ACNGT 1 cut(s) 399
TaqI TCGA 1 cut(s) 75
TasI AATT 1 cut(s) 64
TatI WGTACW 1 cut(s) 238
TscAI CASTG 1 cut(s) 237
TseI GCWGC 3 cut(s) 113, 258, 269
TspDTI ATGAA 2 cut(s) 59, 333
TspRI CASTG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.