Rh7BG467100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0014755
Physical Location & Seq
Reverse (-)
55243808 .. 55245146
1339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG467100.1

Sequence Viewer

Length: 642 bp
ATGCATTCAATTCAATCACAAGCAAAAGCACGTCTCACTGATCCCAGAATCAAGAGTAACCAAGAGTTAGAGGAGAAGATGAAGAATAATAATGACACAAAAGTAAGGCCTAACGACAGGGAAGTCATCATCACTGTCTATGTTGAATCAGATTCACTCTCGCATCATCCCATTAAGAAGATTAATCCCAACACAATCTGCAGAAAGCCTCATCAGACTGCGACAACACGCGTCGATGATCGCCGGGCTCATCTGCTTGCTTATGCTCAAGAGCTAAGAAAAACTGCTAATTCCCAACAGGTGCACTGGCCTAAGAATGGCTCAAAGCCTAAGCACAAGGAGAAAAATTTGCAACAAATTATCAAACTGAAAATGTATGTCATTACTGAGCAGCTAAATAGAAATAGGTTCACAACTCCAGTGAGACTCCGGAGACCAAAAGGTAGCAGATGGAGGTATCAGCGATTAGTACCAGAAGTCGACATACCGTGCAATTCCAAATGGAATAGTTGCAGCAACAGAAAGGCTACCGAATCAAAAAGGAATTCGAACATTATGAGGAAGTTGAGGTGTATGCTGAGAGGATTGATGCACTGCAACAAAGGTTCCCAAGTTGAACGGAAACATAATCAAGCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

25.12

Weight (kDa)

10.5

Isoelectric Point (pI)

52.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014755)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g39000
malus_domestica MD08G1172500.v1.1 MD15G1358100.v1.1
prunus_persica Prupe.1G505500_v2.0.a1
pyrus_communis pycom08g14730 pycom15g32040
rosa_laevigata RLG00000000610
rosa_multiflora Rmu_co7979250.1_g000001 Rmu_ssc0000392.1_g000008
rosa_roxburghii Rroxscaffold_3G00219370
rosa_rugosa Rorug07G0340900 Rorug07G0341000
rosa_samantha Rh7AG495700 Rh7BG467100 Rh7CG513200 Rh7DG480300
rosa_wichuraiana Rw7G041890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 122
AccI GTMKAC 1 cut(s) 480
AccII CGCG 1 cut(s) 231
AccIII TCCGGA 1 cut(s) 429
AclWI GGATC 1 cut(s) 35
AcsI RAATTY 2 cut(s) 346, 544
AfaI GTAC 1 cut(s) 471
AfiI CCNNNNNNNGG 1 cut(s) 317
AflIII ACRYGT 1 cut(s) 229
AgsI TTSAA 4 cut(s) 9, 14, 146, 617
AjiI CACGTC 1 cut(s) 32
AluBI AGCT 3 cut(s) 274, 394, 635
AluI AGCT 3 cut(s) 274, 394, 635
Alw21I GWGCWC 1 cut(s) 306
Alw26I GTCTC 3 cut(s) 38, 418, 427
Alw44I GTGCAC 1 cut(s) 302
AlwI GGATC 1 cut(s) 35
Aor13HI TCCGGA 1 cut(s) 429
AoxI GGCC 2 cut(s) 107, 308
ApaLI GTGCAC 1 cut(s) 302
ApeKI GCWGC 2 cut(s) 391, 513
ApoI RAATTY 2 cut(s) 346, 544
AseI ATTAAT 1 cut(s) 183
AsuC2I CCSGG 1 cut(s) 245
AsuII TTCGAA 1 cut(s) 548
BaeGI GKGCMC 1 cut(s) 306
BanII GRGCYC 1 cut(s) 250
BarI GAAGNNNNNNTAC 2 cut(s) 468, 500
Bbv12I GWGCWC 1 cut(s) 306
BbvI GCAGC 2 cut(s) 403, 525
BccI CCATC 1 cut(s) 444
BcnI CCSGG 1 cut(s) 245
BcoDI GTCTC 3 cut(s) 38, 418, 427
BfmI CTRYAG 1 cut(s) 199
BisI GCNGC 2 cut(s) 392, 514
BlsI GCNGC 2 cut(s) 393, 515
Bme1390I CCNGG 1 cut(s) 245
BmgBI CACGTC 1 cut(s) 32
BmiI GGNNCC 1 cut(s) 607
BmrFI CCNGG 1 cut(s) 245
BmsI GCATC 2 cut(s) 172, 579
BpmI CTGGAG 1 cut(s) 402
Bpu10I CCTNAGC 1 cut(s) 330
Bpu14I TTCGAA 1 cut(s) 548
BpuEI CTTGAG 1 cut(s) 252
BpuMI CCSGG 1 cut(s) 245
BsaI GGTCTC 1 cut(s) 427
BsaWI WCCGGW 1 cut(s) 429
Bsc4I CCNNNNNNNGG 1 cut(s) 317
Bse1I ACTGG 2 cut(s) 311, 419
BseAI TCCGGA 1 cut(s) 429
BseGI GGATG 1 cut(s) 166
BseLI CCNNNNNNNGG 1 cut(s) 317
BseMII CTCAG 2 cut(s) 378, 569
BseNI ACTGG 2 cut(s) 311, 419
BseRI GAGGAG 1 cut(s) 86
BseSI GKGCMC 1 cut(s) 306
BseXI GCAGC 2 cut(s) 403, 525
Bsh1236I CGCG 1 cut(s) 231
BshFI GGCC 2 cut(s) 109, 310
BsiHKAI GWGCWC 1 cut(s) 306
BsiSI CCGG 2 cut(s) 244, 430
BslI CCNNNNNNNGG 1 cut(s) 317
BsmAI GTCTC 3 cut(s) 38, 418, 427
BsmBI CGTCTC 1 cut(s) 38
BsmI GAATGC 1 cut(s) 4
BsnI GGCC 2 cut(s) 109, 310
Bso31I GGTCTC 1 cut(s) 427
Bsp119I TTCGAA 1 cut(s) 548
Bsp1286I GDGCHC 2 cut(s) 250, 306
Bsp13I TCCGGA 1 cut(s) 429
Bsp143I GATC 2 cut(s) 40, 238
BspANI GGCC 2 cut(s) 109, 310
BspCNI CTCAG 2 cut(s) 379, 570
BspEI TCCGGA 1 cut(s) 429
BspFNI CGCG 1 cut(s) 231
BspLI GGNNCC 1 cut(s) 607
BspMAI CTGCAG 1 cut(s) 203
BspPI GGATC 1 cut(s) 35
BspT104I TTCGAA 1 cut(s) 548
BspTNI GGTCTC 1 cut(s) 427
BsrI ACTGG 2 cut(s) 311, 419
BssMI GATC 2 cut(s) 40, 238
Bst4CI ACNGT 2 cut(s) 136, 489
BstBI TTCGAA 1 cut(s) 548
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 5 cut(s) 275, 312, 330, 387, 578
BstF5I GGATG 1 cut(s) 166
BstFNI CGCG 1 cut(s) 231
BstKTI GATC 2 cut(s) 43, 241
BstMAI GTCTC 3 cut(s) 38, 418, 427
BstMBI GATC 2 cut(s) 40, 238
BstSCI CCNGG 1 cut(s) 243
BstSFI CTRYAG 1 cut(s) 199
BstSLI GKGCMC 1 cut(s) 306
BstUI CGCG 1 cut(s) 231
BstV1I GCAGC 2 cut(s) 403, 525
BsuRI GGCC 2 cut(s) 109, 310
BtrI CACGTC 1 cut(s) 32
BtsCI GGATG 1 cut(s) 166
BtsI GCAGTG 1 cut(s) 592
BtsIMutI CAGTG 5 cut(s) 36, 132, 304, 426, 592
Cac8I GCNNGC 1 cut(s) 258
CseI GACGC 1 cut(s) 220
Csp6I GTAC 1 cut(s) 470
CviQI GTAC 1 cut(s) 470
DdeI CTNAG 5 cut(s) 275, 312, 330, 387, 578
DpnI GATC 2 cut(s) 42, 240
DpnII GATC 2 cut(s) 40, 238
DrdI GACNNNNNNGTC 1 cut(s) 122
DseDI GACNNNNNNGTC 1 cut(s) 122
Eco147I AGGCCT 1 cut(s) 109
Eco24I GRGCYC 1 cut(s) 250
Eco31I GGTCTC 1 cut(s) 427
EcoRI GAATTC 1 cut(s) 544
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 250
Esp3I CGTCTC 1 cut(s) 38
FaiI YATR 7 cut(s) 141, 264, 378, 485, 557, 575, 627
FblI GTMKAC 1 cut(s) 480
Fnu4HI GCNGC 2 cut(s) 392, 514
FokI GGATG 1 cut(s) 153
FriOI GRGCYC 1 cut(s) 250
Fsp4HI GCNGC 2 cut(s) 392, 514
GluI GCNGC 2 cut(s) 392, 514
GsuI CTGGAG 1 cut(s) 402
HaeIII GGCC 2 cut(s) 109, 310
HapII CCGG 2 cut(s) 244, 430
HgaI GACGC 1 cut(s) 220
HincII GTYRAC 1 cut(s) 481
HindII GTYRAC 1 cut(s) 481
HinfI GANTC 5 cut(s) 48, 146, 152, 426, 533
HpaII CCGG 2 cut(s) 244, 430
Hpy166II GTNNAC 3 cut(s) 304, 411, 481
Hpy188I TCNGA 2 cut(s) 151, 216
Hpy188III TCNNGA 3 cut(s) 52, 269, 430
Hpy8I GTNNAC 3 cut(s) 304, 411, 481
Hpy99I CGWCG 1 cut(s) 236
HpyCH4III ACNGT 2 cut(s) 136, 489
HpyCH4IV ACGT 1 cut(s) 31
HpyCH4V TGCA 8 cut(s) 4, 201, 304, 352, 492, 513, 592, 597
HpyF3I CTNAG 5 cut(s) 275, 312, 330, 387, 578
HpySE526I ACGT 1 cut(s) 31
Kpn2I TCCGGA 1 cut(s) 429
Kzo9I GATC 2 cut(s) 40, 238
LpnPI CCDG 8 cut(s) 58, 103, 257, 284, 292, 432, 443, 486
Lsp1109I GCAGC 2 cut(s) 403, 525
LweI GCATC 2 cut(s) 172, 579
MaeII ACGT 1 cut(s) 31
MaeIII GTNAC 1 cut(s) 56
MalI GATC 2 cut(s) 42, 240
MboI GATC 2 cut(s) 40, 238
MboII GAAGA 3 cut(s) 88, 94, 190
MhlI GDGCHC 2 cut(s) 250, 306
MluCI AATT 6 cut(s) 9, 289, 346, 357, 493, 544
MluI ACGCGT 1 cut(s) 229
MlyI GAGTC 1 cut(s) 420
MnlI CCTC 6 cut(s) 64, 219, 447, 552, 561, 575
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 429
MseI TTAA 2 cut(s) 174, 183
MspI CCGG 2 cut(s) 244, 430
MspR9I CCNGG 1 cut(s) 245
Mva1269I GAATGC 1 cut(s) 4
MvnI CGCG 1 cut(s) 231
NciI CCSGG 1 cut(s) 245
NdeII GATC 2 cut(s) 40, 238
NlaIV GGNNCC 1 cut(s) 607
NsiI ATGCAT 1 cut(s) 6
NspV TTCGAA 1 cut(s) 548
PceI AGGCCT 1 cut(s) 109
PctI GAATGC 1 cut(s) 4
PfeI GAWTC 4 cut(s) 48, 146, 152, 533
PkrI GCNGC 2 cut(s) 393, 515
PleI GAGTC 1 cut(s) 420
PpsI GAGTC 1 cut(s) 420
PshBI ATTAAT 1 cut(s) 183
PspN4I GGNNCC 1 cut(s) 607
PstI CTGCAG 1 cut(s) 203
RsaI GTAC 1 cut(s) 471
RsaNI GTAC 1 cut(s) 470
SalI GTCGAC 1 cut(s) 479
SaqAI TTAA 2 cut(s) 174, 183
SatI GCNGC 2 cut(s) 392, 514
Sau3AI GATC 2 cut(s) 40, 238
SchI GAGTC 1 cut(s) 420
ScrFI CCNGG 1 cut(s) 245
SduI GDGCHC 2 cut(s) 250, 306
SfaNI GCATC 2 cut(s) 172, 579
SfcI CTRYAG 1 cut(s) 199
SfuI TTCGAA 1 cut(s) 548
SmlI CTYRAG 1 cut(s) 267
SmoI CTYRAG 1 cut(s) 267
Sse9I AATT 6 cut(s) 9, 289, 346, 357, 493, 544
SseBI AGGCCT 1 cut(s) 109
StuI AGGCCT 1 cut(s) 109
StyD4I CCNGG 1 cut(s) 243
TaaI ACNGT 2 cut(s) 136, 489
TaiI ACGT 1 cut(s) 34
TaqI TCGA 3 cut(s) 234, 480, 548
TasI AATT 6 cut(s) 9, 289, 346, 357, 493, 544
TfiI GAWTC 4 cut(s) 48, 146, 152, 533
Tru1I TTAA 2 cut(s) 174, 183
Tru9I TTAA 2 cut(s) 174, 183
TscAI CASTG 5 cut(s) 43, 139, 311, 426, 599
TseI GCWGC 2 cut(s) 391, 513
TspDTI ATGAA 1 cut(s) 95
TspGWI ACGGA 1 cut(s) 634
TspRI CASTG 5 cut(s) 43, 139, 311, 426, 599
VneI GTGCAC 1 cut(s) 302
VspI ATTAAT 1 cut(s) 183
XapI RAATTY 2 cut(s) 346, 544
XmiI GTMKAC 1 cut(s) 480
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.