pycom08g14730

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0014755
Physical Location & Seq
Forward (+)
14135928 .. 14136965
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g14730.2

Sequence Viewer

Length: 594 bp
ATGGATTCAACTTATTCACAAGCAAAATCACATCCAGAAGCCATGGCAAAACAAGAGTTAGAGAAAGAGGAGAAGAACAATGGCACAAGAGAGAGACCTAACAAGAAGGAAGTGATCATCACTGTCTATGTGGAATCACCAGCATCGTCTGATTCTCGTCAGAAACCTGGTCCTGTAAGGAAGATTAACCCCAAGCCGAGCTCCGAAAAGCCTCTTCAGATTGCGAAAACACGAATCTATGATCGCCGGGCTCAACTCCTTGCTTATTCTCAAGAGCTACGAACAACTGGTGATGCTCGGAAAGTGCAATGGACTAACAACGGTTCAAAGCCTAAGCCTAGGGTGGGAAACAAAAGGTTCATAGCTCCAATAAGACACAAAAGAACAAAGAGCAGAGGGAGATATCAACGCTTAGTACCAAAAGTGGACGTATATTGTAATCCCAAATCCGTCATAGGCAGGAACAAAAAGGCCATCGGATCAGAAACAAGTGCTAACTTTCTGAGGAAGATAAGGTGTGTGCTGAGAGGAATTTCTGGTTTGCGCTGCAACAAAGGGTCCAAGGTTGCAGAGAGAAATTATCATGCTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

22.43

Weight (kDa)

10.56

Isoelectric Point (pI)

43.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014755)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g39000
malus_domestica MD08G1172500.v1.1 MD15G1358100.v1.1
prunus_persica Prupe.1G505500_v2.0.a1
pyrus_communis pycom08g14730 pycom15g32040
rosa_laevigata RLG00000000610
rosa_multiflora Rmu_co7979250.1_g000001 Rmu_ssc0000392.1_g000008
rosa_roxburghii Rroxscaffold_3G00219370
rosa_rugosa Rorug07G0340900 Rorug07G0341000
rosa_samantha Rh7AG495700 Rh7BG467100 Rh7CG513200 Rh7DG480300
rosa_wichuraiana Rw7G041890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 487
AcsI RAATTY 1 cut(s) 531
AcuI CTGAAG 1 cut(s) 200
AfaI GTAC 1 cut(s) 417
AfiI CCNNNNNNNGG 1 cut(s) 344
AgsI TTSAA 2 cut(s) 9, 327
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 3 cut(s) 201, 277, 365
AluI AGCT 3 cut(s) 201, 277, 365
Alw21I GWGCWC 1 cut(s) 203
Alw26I GTCTC 1 cut(s) 88
AlwI GGATC 1 cut(s) 487
AoxI GGCC 1 cut(s) 471
ApeKI GCWGC 1 cut(s) 546
ApoI RAATTY 1 cut(s) 531
AspA2I CCTAGG 1 cut(s) 338
AspLEI GCGC 1 cut(s) 546
AspS9I GGNCC 2 cut(s) 170, 558
AsuC2I CCSGG 1 cut(s) 248
AsuHPI GGTGA 2 cut(s) 129, 302
AvaII GGWCC 2 cut(s) 170, 558
AvrII CCTAGG 1 cut(s) 338
BanII GRGCYC 2 cut(s) 203, 253
Bbv12I GWGCWC 1 cut(s) 203
BbvI GCAGC 1 cut(s) 533
BccI CCATC 1 cut(s) 482
BciT130I CCWGG 1 cut(s) 168
BclI TGATCA 1 cut(s) 114
BcnI CCSGG 1 cut(s) 248
BcoDI GTCTC 1 cut(s) 88
BfaI CTAG 1 cut(s) 339
BisI GCNGC 1 cut(s) 547
BlnI CCTAGG 1 cut(s) 338
BlsI GCNGC 1 cut(s) 548
Bme1390I CCNGG 2 cut(s) 168, 248
Bme18I GGWCC 2 cut(s) 170, 558
BmgT120I GGNCC 2 cut(s) 170, 558
BmiI GGNNCC 1 cut(s) 559
BmrFI CCNGG 2 cut(s) 168, 248
BmsI GCATC 2 cut(s) 152, 283
Bpu10I CCTNAGC 1 cut(s) 333
BpuEI CTTGAG 1 cut(s) 255
BpuMI CCSGG 1 cut(s) 248
BsaI GGTCTC 1 cut(s) 88
BsaJI CCNNGG 3 cut(s) 42, 338, 561
Bsc4I CCNNNNNNNGG 1 cut(s) 344
Bse1I ACTGG 1 cut(s) 292
Bse3DI GCAATG 1 cut(s) 314
BseBI CCWGG 1 cut(s) 168
BseDI CCNNGG 3 cut(s) 42, 338, 561
BseGI GGATG 1 cut(s) 31
BseLI CCNNNNNNNGG 1 cut(s) 344
BseMI GCAATG 1 cut(s) 314
BseMII CTCAG 2 cut(s) 494, 515
BseNI ACTGG 1 cut(s) 292
BseRI GAGGAG 1 cut(s) 83
BseXI GCAGC 1 cut(s) 533
BshFI GGCC 1 cut(s) 473
BsiHKAI GWGCWC 1 cut(s) 203
BsiSI CCGG 1 cut(s) 247
BslI CCNNNNNNNGG 1 cut(s) 344
BsmAI GTCTC 1 cut(s) 88
BsnI GGCC 1 cut(s) 473
Bso31I GGTCTC 1 cut(s) 88
Bsp1286I GDGCHC 2 cut(s) 203, 253
Bsp143I GATC 3 cut(s) 114, 241, 479
Bsp19I CCATGG 1 cut(s) 42
BspANI GGCC 1 cut(s) 473
BspCNI CTCAG 2 cut(s) 495, 516
BspLI GGNNCC 1 cut(s) 559
BspPI GGATC 1 cut(s) 487
BspTNI GGTCTC 1 cut(s) 88
BsrDI GCAATG 1 cut(s) 314
BsrI ACTGG 1 cut(s) 292
BssECI CCNNGG 3 cut(s) 42, 338, 561
BssMI GATC 3 cut(s) 114, 241, 479
BssT1I CCWWGG 3 cut(s) 42, 338, 561
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 2 cut(s) 124, 323
Bst6I CTCTTC 1 cut(s) 219
BstDEI CTNAG 4 cut(s) 333, 412, 503, 524
BstDSI CCRYGG 1 cut(s) 42
BstF5I GGATG 1 cut(s) 31
BstHHI GCGC 1 cut(s) 546
BstKTI GATC 3 cut(s) 117, 244, 482
BstMAI GTCTC 1 cut(s) 88
BstMBI GATC 3 cut(s) 114, 241, 479
BstNI CCWGG 1 cut(s) 168
BstSCI CCNGG 2 cut(s) 166, 246
BstV1I GCAGC 1 cut(s) 533
BsuRI GGCC 1 cut(s) 473
BtgI CCRYGG 1 cut(s) 42
BtsCI GGATG 1 cut(s) 31
BtsIMutI CAGTG 1 cut(s) 120
CfoI GCGC 1 cut(s) 546
Cfr13I GGNCC 2 cut(s) 170, 558
CsiI ACCWGGT 1 cut(s) 166
Csp6I GTAC 1 cut(s) 416
CviAII CATG 2 cut(s) 43, 584
CviQI GTAC 1 cut(s) 416
DdeI CTNAG 4 cut(s) 333, 412, 503, 524
DpnI GATC 3 cut(s) 116, 243, 481
DpnII GATC 3 cut(s) 114, 241, 479
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
Ecl136II GAGCTC 1 cut(s) 201
Eco130I CCWWGG 3 cut(s) 42, 338, 561
Eco24I GRGCYC 2 cut(s) 203, 253
Eco31I GGTCTC 1 cut(s) 88
Eco32I GATATC 1 cut(s) 404
Eco47I GGWCC 2 cut(s) 170, 558
Eco53kI GAGCTC 1 cut(s) 201
Eco57I CTGAAG 1 cut(s) 200
EcoICRI GAGCTC 1 cut(s) 201
EcoRII CCWGG 1 cut(s) 166
EcoRV GATATC 1 cut(s) 404
EcoT14I CCWWGG 3 cut(s) 42, 338, 561
EcoT38I GRGCYC 2 cut(s) 203, 253
ErhI CCWWGG 3 cut(s) 42, 338, 561
FaeI CATG 2 cut(s) 46, 587
FaiI YATR 7 cut(s) 44, 129, 240, 362, 433, 455, 585
FatI CATG 2 cut(s) 42, 583
FbaI TGATCA 1 cut(s) 114
Fnu4HI GCNGC 1 cut(s) 547
FokI GGATG 1 cut(s) 18
FriOI GRGCYC 2 cut(s) 203, 253
Fsp4HI GCNGC 1 cut(s) 547
FspBI CTAG 1 cut(s) 339
GlaI GCGC 1 cut(s) 545
GluI GCNGC 1 cut(s) 547
HaeIII GGCC 1 cut(s) 473
HapII CCGG 1 cut(s) 247
HhaI GCGC 1 cut(s) 546
Hin1II CATG 2 cut(s) 46, 587
Hin6I GCGC 1 cut(s) 544
HinP1I GCGC 1 cut(s) 544
HinfI GANTC 4 cut(s) 5, 134, 152, 234
HpaII CCGG 1 cut(s) 247
HphI GGTGA 2 cut(s) 129, 302
Hpy166II GTNNAC 1 cut(s) 427
Hpy188I TCNGA 8 cut(s) 151, 162, 205, 219, 300, 479, 484, 504
Hpy188III TCNNGA 2 cut(s) 35, 272
Hpy8I GTNNAC 1 cut(s) 427
HpyAV CCTTC 1 cut(s) 100
HpyCH4III ACNGT 2 cut(s) 124, 323
HpyCH4IV ACGT 1 cut(s) 429
HpyCH4V TGCA 3 cut(s) 307, 549, 569
HpyF3I CTNAG 4 cut(s) 333, 412, 503, 524
HpySE526I ACGT 1 cut(s) 429
Hsp92II CATG 2 cut(s) 46, 587
HspAI GCGC 1 cut(s) 544
Ksp22I TGATCA 1 cut(s) 114
Kzo9I GATC 3 cut(s) 114, 241, 479
LmnI GCTCC 2 cut(s) 206, 370
LpnPI CCDG 9 cut(s) 48, 153, 153, 180, 186, 260, 273, 445, 522
Lsp1109I GCAGC 1 cut(s) 533
LweI GCATC 2 cut(s) 152, 283
MabI ACCWGGT 1 cut(s) 166
MaeI CTAG 1 cut(s) 339
MaeII ACGT 1 cut(s) 429
MalI GATC 3 cut(s) 116, 243, 481
MboI GATC 3 cut(s) 114, 241, 479
MboII GAAGA 4 cut(s) 85, 193, 206, 520
MhlI GDGCHC 2 cut(s) 203, 253
MluCI AATT 2 cut(s) 531, 577
MnlI CCTC 5 cut(s) 61, 222, 389, 498, 521
MseI TTAA 1 cut(s) 186
MspI CCGG 1 cut(s) 247
MspR9I CCNGG 2 cut(s) 168, 248
MvaI CCWGG 1 cut(s) 168
NciI CCSGG 1 cut(s) 248
NcoI CCATGG 1 cut(s) 42
NdeII GATC 3 cut(s) 114, 241, 479
NlaIII CATG 2 cut(s) 46, 587
NlaIV GGNNCC 1 cut(s) 559
NmeAIII GCCGAG 1 cut(s) 222
PfeI GAWTC 4 cut(s) 5, 134, 152, 234
PkrI GCNGC 1 cut(s) 548
Psp124BI GAGCTC 1 cut(s) 203
Psp6I CCWGG 1 cut(s) 166
PspGI CCWGG 1 cut(s) 166
PspN4I GGNNCC 1 cut(s) 559
PspPI GGNCC 2 cut(s) 170, 558
RsaI GTAC 1 cut(s) 417
RsaNI GTAC 1 cut(s) 416
SacI GAGCTC 1 cut(s) 203
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 1 cut(s) 547
Sau3AI GATC 3 cut(s) 114, 241, 479
Sau96I GGNCC 2 cut(s) 170, 558
ScrFI CCNGG 2 cut(s) 168, 248
SduI GDGCHC 2 cut(s) 203, 253
SetI ASST 9 cut(s) 100, 169, 203, 279, 359, 367, 432, 518, 567
SexAI ACCWGGT 1 cut(s) 166
SfaNI GCATC 2 cut(s) 152, 283
SinI GGWCC 2 cut(s) 170, 558
SmlI CTYRAG 1 cut(s) 270
SmoI CTYRAG 1 cut(s) 270
Sse9I AATT 2 cut(s) 531, 577
SspMI CTAG 1 cut(s) 339
SstI GAGCTC 1 cut(s) 203
StyD4I CCNGG 2 cut(s) 166, 246
StyI CCWWGG 3 cut(s) 42, 338, 561
TaaI ACNGT 2 cut(s) 124, 323
TaiI ACGT 1 cut(s) 432
TasI AATT 2 cut(s) 531, 577
TfiI GAWTC 4 cut(s) 5, 134, 152, 234
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TscAI CASTG 1 cut(s) 127
TseI GCWGC 1 cut(s) 546
TspDTI ATGAA 1 cut(s) 349
TspGWI ACGGA 1 cut(s) 439
TspRI CASTG 1 cut(s) 127
VpaK11BI GGWCC 2 cut(s) 170, 558
XapI RAATTY 1 cut(s) 531
XmaJI CCTAGG 1 cut(s) 338
XspI CTAG 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.