Rh7AG495700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0014755
Physical Location & Seq
Reverse (-)
69597457 .. 69598376
920 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG495700.1

Sequence Viewer

Length: 525 bp
ATGCATTCAATTCAATCACAAGCAAAAGCACGTCTCACTGATCCCAGAATCAAGGGTAACCAAGAGTTAGAGGAGAAGATGAAGAATAATAATGACACAAAAGTAAGGCCTAACAACAGGGAAGTCATCATCACTGTCTATGTTGAATCAGATTCCCTCTCGCATCATCCCATTAAGAAGATTAATCCCAACACAATCTGCAGAAAGCCTCATCAGACTGCGACAACACGCATCTATGATCGCCGGGCTCATCTGCTTGCTTATGCTCAAGAGCTAAGAAAAACTGCTAATTCCCAACAGGTGCACTGGCCTAAGAATGGCTCAAAGCCTAAGCACAAGCTAAATAGAAATAGGTTCACAACTCCAGTGAGACTCCGGAGACCAAAAGGTAGCAGATGGAGGTATCAGCGATTAGTACCAGAAGTCGACATACCGTGCAATTCCAAATGGAATAGTTGCAGCAACAGAAAGGCTACCGAATCAAAAAGGAATTCGAACATGATGTTATGGATGTTGATCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

20.54

Weight (kDa)

10.78

Isoelectric Point (pI)

48.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014755)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g39000
malus_domestica MD08G1172500.v1.1 MD15G1358100.v1.1
prunus_persica Prupe.1G505500_v2.0.a1
pyrus_communis pycom08g14730 pycom15g32040
rosa_laevigata RLG00000000610
rosa_multiflora Rmu_co7979250.1_g000001 Rmu_ssc0000392.1_g000008
rosa_roxburghii Rroxscaffold_3G00219370
rosa_rugosa Rorug07G0340900 Rorug07G0341000
rosa_samantha Rh7AG495700 Rh7BG467100 Rh7CG513200 Rh7DG480300
rosa_wichuraiana Rw7G041890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 426
AccIII TCCGGA 1 cut(s) 375
AclWI GGATC 1 cut(s) 35
AcsI RAATTY 1 cut(s) 490
AfaI GTAC 1 cut(s) 417
AfiI CCNNNNNNNGG 1 cut(s) 317
AgsI TTSAA 3 cut(s) 9, 14, 146
AjiI CACGTC 1 cut(s) 32
AluBI AGCT 2 cut(s) 274, 340
AluI AGCT 2 cut(s) 274, 340
Alw21I GWGCWC 1 cut(s) 306
Alw26I GTCTC 3 cut(s) 38, 364, 373
Alw44I GTGCAC 1 cut(s) 302
AlwI GGATC 1 cut(s) 35
Aor13HI TCCGGA 1 cut(s) 375
AoxI GGCC 2 cut(s) 107, 308
ApaLI GTGCAC 1 cut(s) 302
ApeKI GCWGC 1 cut(s) 459
ApoI RAATTY 1 cut(s) 490
AseI ATTAAT 1 cut(s) 183
AsuC2I CCSGG 1 cut(s) 245
AsuII TTCGAA 1 cut(s) 494
BaeGI GKGCMC 1 cut(s) 306
BanII GRGCYC 1 cut(s) 250
BarI GAAGNNNNNNTAC 2 cut(s) 414, 446
Bbv12I GWGCWC 1 cut(s) 306
BbvI GCAGC 1 cut(s) 471
BccI CCATC 1 cut(s) 390
BclI TGATCA 1 cut(s) 516
BcnI CCSGG 1 cut(s) 245
BcoDI GTCTC 3 cut(s) 38, 364, 373
BfaI CTAG 1 cut(s) 523
BfmI CTRYAG 1 cut(s) 199
BisI GCNGC 1 cut(s) 460
BlsI GCNGC 1 cut(s) 461
Bme1390I CCNGG 1 cut(s) 245
BmgBI CACGTC 1 cut(s) 32
BmrFI CCNGG 1 cut(s) 245
BmsI GCATC 2 cut(s) 172, 240
BpmI CTGGAG 1 cut(s) 348
Bpu10I CCTNAGC 1 cut(s) 330
Bpu14I TTCGAA 1 cut(s) 494
BpuEI CTTGAG 1 cut(s) 252
BpuMI CCSGG 1 cut(s) 245
BsaBI GATNNNNATC 1 cut(s) 515
BsaI GGTCTC 1 cut(s) 373
BsaWI WCCGGW 1 cut(s) 375
Bsc4I CCNNNNNNNGG 1 cut(s) 317
Bse1I ACTGG 2 cut(s) 311, 365
Bse8I GATNNNNATC 1 cut(s) 515
BseAI TCCGGA 1 cut(s) 375
BseGI GGATG 2 cut(s) 166, 516
BseJI GATNNNNATC 1 cut(s) 515
BseLI CCNNNNNNNGG 1 cut(s) 317
BseNI ACTGG 2 cut(s) 311, 365
BseRI GAGGAG 1 cut(s) 86
BseSI GKGCMC 1 cut(s) 306
BseXI GCAGC 1 cut(s) 471
BshFI GGCC 2 cut(s) 109, 310
BsiHKAI GWGCWC 1 cut(s) 306
BsiSI CCGG 2 cut(s) 244, 376
BslI CCNNNNNNNGG 1 cut(s) 317
BsmAI GTCTC 3 cut(s) 38, 364, 373
BsmBI CGTCTC 1 cut(s) 38
BsmI GAATGC 1 cut(s) 4
BsnI GGCC 2 cut(s) 109, 310
Bso31I GGTCTC 1 cut(s) 373
Bsp119I TTCGAA 1 cut(s) 494
Bsp1286I GDGCHC 2 cut(s) 250, 306
Bsp13I TCCGGA 1 cut(s) 375
Bsp143I GATC 3 cut(s) 40, 238, 516
BspANI GGCC 2 cut(s) 109, 310
BspEI TCCGGA 1 cut(s) 375
BspMAI CTGCAG 1 cut(s) 203
BspPI GGATC 1 cut(s) 35
BspT104I TTCGAA 1 cut(s) 494
BspTNI GGTCTC 1 cut(s) 373
BsrI ACTGG 2 cut(s) 311, 365
BssMI GATC 3 cut(s) 40, 238, 516
Bst4CI ACNGT 2 cut(s) 136, 435
BstBI TTCGAA 1 cut(s) 494
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 3 cut(s) 275, 312, 330
BstEII GGTNACC 1 cut(s) 56
BstF5I GGATG 2 cut(s) 166, 516
BstKTI GATC 3 cut(s) 43, 241, 519
BstMAI GTCTC 3 cut(s) 38, 364, 373
BstMBI GATC 3 cut(s) 40, 238, 516
BstPI GGTNACC 1 cut(s) 56
BstSCI CCNGG 1 cut(s) 243
BstSFI CTRYAG 1 cut(s) 199
BstSLI GKGCMC 1 cut(s) 306
BstV1I GCAGC 1 cut(s) 471
BsuRI GGCC 2 cut(s) 109, 310
BtrI CACGTC 1 cut(s) 32
BtsCI GGATG 2 cut(s) 166, 516
BtsIMutI CAGTG 4 cut(s) 36, 132, 304, 372
Cac8I GCNNGC 1 cut(s) 258
Csp6I GTAC 1 cut(s) 416
CviAII CATG 1 cut(s) 499
CviJI RGCY 9 cut(s) 109, 208, 248, 274, 310, 321, 328, 340, 473
CviKI_1 RGCY 9 cut(s) 109, 208, 248, 274, 310, 321, 328, 340, 473
CviQI GTAC 1 cut(s) 416
DdeI CTNAG 3 cut(s) 275, 312, 330
DpnI GATC 3 cut(s) 42, 240, 518
DpnII GATC 3 cut(s) 40, 238, 516
Eco147I AGGCCT 1 cut(s) 109
Eco24I GRGCYC 1 cut(s) 250
Eco31I GGTCTC 1 cut(s) 373
Eco91I GGTNACC 1 cut(s) 56
EcoO65I GGTNACC 1 cut(s) 56
EcoRI GAATTC 1 cut(s) 490
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 250
Esp3I CGTCTC 1 cut(s) 38
FaeI CATG 1 cut(s) 502
FaiI YATR 6 cut(s) 141, 237, 264, 431, 500, 508
FatI CATG 1 cut(s) 498
FbaI TGATCA 1 cut(s) 516
FblI GTMKAC 1 cut(s) 426
Fnu4HI GCNGC 1 cut(s) 460
FokI GGATG 1 cut(s) 153
FriOI GRGCYC 1 cut(s) 250
Fsp4HI GCNGC 1 cut(s) 460
FspBI CTAG 1 cut(s) 523
GluI GCNGC 1 cut(s) 460
GsuI CTGGAG 1 cut(s) 348
HaeIII GGCC 2 cut(s) 109, 310
HapII CCGG 2 cut(s) 244, 376
Hin1II CATG 1 cut(s) 502
HincII GTYRAC 1 cut(s) 427
HindII GTYRAC 1 cut(s) 427
HinfI GANTC 5 cut(s) 48, 146, 152, 372, 479
HpaII CCGG 2 cut(s) 244, 376
Hpy166II GTNNAC 3 cut(s) 304, 357, 427
Hpy188I TCNGA 2 cut(s) 151, 216
Hpy188III TCNNGA 2 cut(s) 269, 376
Hpy8I GTNNAC 3 cut(s) 304, 357, 427
HpyCH4III ACNGT 2 cut(s) 136, 435
HpyCH4IV ACGT 1 cut(s) 31
HpyCH4V TGCA 5 cut(s) 4, 201, 304, 438, 459
HpyF3I CTNAG 3 cut(s) 275, 312, 330
HpySE526I ACGT 1 cut(s) 31
Hsp92II CATG 1 cut(s) 502
Kpn2I TCCGGA 1 cut(s) 375
Ksp22I TGATCA 1 cut(s) 516
Kzo9I GATC 3 cut(s) 40, 238, 516
LpnPI CCDG 8 cut(s) 58, 103, 257, 284, 292, 378, 389, 432
Lsp1109I GCAGC 1 cut(s) 471
LweI GCATC 2 cut(s) 172, 240
MaeI CTAG 1 cut(s) 523
MaeII ACGT 1 cut(s) 31
MaeIII GTNAC 1 cut(s) 56
MalI GATC 3 cut(s) 42, 240, 518
MboI GATC 3 cut(s) 40, 238, 516
MboII GAAGA 3 cut(s) 88, 94, 190
MhlI GDGCHC 2 cut(s) 250, 306
MluCI AATT 4 cut(s) 9, 289, 439, 490
MlyI GAGTC 1 cut(s) 366
MnlI CCTC 4 cut(s) 64, 167, 219, 393
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 375
MseI TTAA 2 cut(s) 174, 183
MspI CCGG 2 cut(s) 244, 376
MspR9I CCNGG 1 cut(s) 245
Mva1269I GAATGC 1 cut(s) 4
NciI CCSGG 1 cut(s) 245
NdeII GATC 3 cut(s) 40, 238, 516
NlaIII CATG 1 cut(s) 502
NsiI ATGCAT 1 cut(s) 6
NspV TTCGAA 1 cut(s) 494
PceI AGGCCT 1 cut(s) 109
PctI GAATGC 1 cut(s) 4
PfeI GAWTC 4 cut(s) 48, 146, 152, 479
PkrI GCNGC 1 cut(s) 461
PleI GAGTC 1 cut(s) 366
PpsI GAGTC 1 cut(s) 366
PshBI ATTAAT 1 cut(s) 183
PspEI GGTNACC 1 cut(s) 56
PstI CTGCAG 1 cut(s) 203
RsaI GTAC 1 cut(s) 417
RsaNI GTAC 1 cut(s) 416
SalI GTCGAC 1 cut(s) 425
SaqAI TTAA 2 cut(s) 174, 183
SatI GCNGC 1 cut(s) 460
Sau3AI GATC 3 cut(s) 40, 238, 516
SchI GAGTC 1 cut(s) 366
ScrFI CCNGG 1 cut(s) 245
SduI GDGCHC 2 cut(s) 250, 306
SetI ASST 7 cut(s) 34, 276, 303, 342, 356, 391, 404
SfaNI GCATC 2 cut(s) 172, 240
SfcI CTRYAG 1 cut(s) 199
SfuI TTCGAA 1 cut(s) 494
SmlI CTYRAG 1 cut(s) 267
SmoI CTYRAG 1 cut(s) 267
Sse9I AATT 4 cut(s) 9, 289, 439, 490
SseBI AGGCCT 1 cut(s) 109
SspMI CTAG 1 cut(s) 523
StuI AGGCCT 1 cut(s) 109
StyD4I CCNGG 1 cut(s) 243
TaaI ACNGT 2 cut(s) 136, 435
TaiI ACGT 1 cut(s) 34
TaqI TCGA 2 cut(s) 426, 494
TasI AATT 4 cut(s) 9, 289, 439, 490
TfiI GAWTC 4 cut(s) 48, 146, 152, 479
Tru1I TTAA 2 cut(s) 174, 183
Tru9I TTAA 2 cut(s) 174, 183
TscAI CASTG 4 cut(s) 43, 139, 311, 372
TseI GCWGC 1 cut(s) 459
TspDTI ATGAA 1 cut(s) 95
TspRI CASTG 4 cut(s) 43, 139, 311, 372
VneI GTGCAC 1 cut(s) 302
VspI ATTAAT 1 cut(s) 183
XapI RAATTY 1 cut(s) 490
XmiI GTMKAC 1 cut(s) 426
XspI CTAG 1 cut(s) 523
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.