FvH4_6g04020

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0009694
Physical Location & Seq
Forward (+)
2194680 .. 2195162
483 bp
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UTR
Exon/CDS
Intron
FvH4_6g04020.t1

Sequence Viewer

Length: 483 bp
ATGGTGAAGTCTAAAGGCCGCTTCTCTTATTGCCTACCAGCATGGACAGCTCCAAAGGGAACTTCAGCATTCTTAACTTTCAGTAACGAGGCAACAATAAAAGGAAAGTCTCAGACCAACATTCCTGCTTACAATATCAAGCTGTTGGGTGTTAGTATTGGAACACAGTGTCTTAGCATCGATCCTGCACTGTTCAAGCTACGACACGGCCCTAGTGGTGGGTTTTTCACAGATTCAGGTACTGTGTTTATCAAAAGTGCATATAGGATTCTGAGGCAGGAAATGGTGCAGTATATCATGCAGCATTATAGATGGAGTCCTGTTGAAGAAAGGGAAGGTCCTCTTGACCTTTGCTATAGAGCATCAGAAGGGGGACATGGTACTTTACCAGCAATGATCTTGTGCTGGATTCTAAGGCAGTGTTTGAACCTATTAATACCTCTCCCTGCATGGCTATACTGCCTACTACTGATCAAGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

161

Amino Acids

17.98

Weight (kDa)

9.22

Isoelectric Point (pI)

47.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_C PF14541 43 - 123 1e-08 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 19
AclWI GGATC 1 cut(s) 176
AcuI CTGAAG 1 cut(s) 48
AfaI GTAC 2 cut(s) 241, 382
AfiI CCNNNNNNNGG 1 cut(s) 218
AgsI TTSAA 3 cut(s) 196, 326, 427
AjuI GAANNNNNNNTTGG 2 cut(s) 46, 78
AluBI AGCT 3 cut(s) 50, 142, 199
AluI AGCT 3 cut(s) 50, 142, 199
Alw26I GTCTC 1 cut(s) 114
AlwI GGATC 1 cut(s) 176
AlwNI CAGNNNCTG 1 cut(s) 242
AoxI GGCC 2 cut(s) 16, 208
ApeKI GCWGC 1 cut(s) 301
AseI ATTAAT 1 cut(s) 434
AspS9I GGNCC 2 cut(s) 209, 338
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 1 cut(s) 338
BbvI GCAGC 1 cut(s) 313
BccI CCATC 1 cut(s) 306
BceAI ACGGC 1 cut(s) 223
BclI TGATCA 1 cut(s) 471
BcoDI GTCTC 1 cut(s) 114
BfaI CTAG 1 cut(s) 213
BfmI CTRYAG 1 cut(s) 355
BisI GCNGC 2 cut(s) 19, 302
BlsI GCNGC 2 cut(s) 20, 303
Bme18I GGWCC 1 cut(s) 338
BmgT120I GGNCC 2 cut(s) 209, 338
BmsI GCATC 2 cut(s) 186, 371
Bsa29I ATCGAT 1 cut(s) 180
Bsc4I CCNNNNNNNGG 1 cut(s) 218
Bse3DI GCAATG 1 cut(s) 399
BseCI ATCGAT 1 cut(s) 180
BseLI CCNNNNNNNGG 1 cut(s) 218
BseMI GCAATG 1 cut(s) 399
BseMII CTCAG 2 cut(s) 125, 263
BseXI GCAGC 1 cut(s) 313
BsgI GTGCAG 2 cut(s) 171, 308
BshFI GGCC 2 cut(s) 18, 210
BshVI ATCGAT 1 cut(s) 180
BslFI GGGAC 1 cut(s) 387
BslI CCNNNNNNNGG 1 cut(s) 218
BsmAI GTCTC 1 cut(s) 114
BsmFI GGGAC 1 cut(s) 387
BsmI GAATGC 1 cut(s) 68
BsnI GGCC 2 cut(s) 18, 210
Bsp143I GATC 3 cut(s) 181, 396, 471
BspACI CCGC 1 cut(s) 19
BspANI GGCC 2 cut(s) 18, 210
BspCNI CTCAG 2 cut(s) 124, 264
BspDI ATCGAT 1 cut(s) 180
BspPI GGATC 1 cut(s) 176
BsrDI GCAATG 1 cut(s) 399
BssMI GATC 3 cut(s) 181, 396, 471
Bst4CI ACNGT 3 cut(s) 168, 192, 244
BstDEI CTNAG 4 cut(s) 111, 173, 272, 413
BstKTI GATC 3 cut(s) 184, 399, 474
BstMAI GTCTC 1 cut(s) 114
BstMBI GATC 3 cut(s) 181, 396, 471
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstSFI CTRYAG 1 cut(s) 355
BstV1I GCAGC 1 cut(s) 313
Bsu15I ATCGAT 1 cut(s) 180
BsuRI GGCC 2 cut(s) 18, 210
BsuTUI ATCGAT 1 cut(s) 180
BtsI GCAGTG 1 cut(s) 425
BtsIMutI CAGTG 3 cut(s) 173, 188, 425
CaiI CAGNNNCTG 1 cut(s) 242
Cfr13I GGNCC 2 cut(s) 209, 338
ClaI ATCGAT 1 cut(s) 180
Csp6I GTAC 2 cut(s) 240, 381
CviAII CATG 4 cut(s) 42, 298, 377, 450
CviJI RGCY 6 cut(s) 18, 50, 142, 199, 210, 454
CviKI_1 RGCY 6 cut(s) 18, 50, 142, 199, 210, 454
CviQI GTAC 2 cut(s) 240, 381
DdeI CTNAG 4 cut(s) 111, 173, 272, 413
DpnI GATC 3 cut(s) 183, 398, 473
DpnII GATC 3 cut(s) 181, 396, 471
Eco47I GGWCC 1 cut(s) 338
Eco57I CTGAAG 1 cut(s) 48
EcoO109I RGGNCCY 1 cut(s) 338
FaeI CATG 4 cut(s) 45, 301, 380, 453
FalI AAGNNNNNCTT 2 cut(s) 327, 359
FaqI GGGAC 1 cut(s) 387
FatI CATG 4 cut(s) 41, 297, 376, 449
FbaI TGATCA 1 cut(s) 471
Fnu4HI GCNGC 2 cut(s) 19, 302
Fsp4HI GCNGC 2 cut(s) 19, 302
FspBI CTAG 1 cut(s) 213
GluI GCNGC 2 cut(s) 19, 302
HaeIII GGCC 2 cut(s) 18, 210
Hin1II CATG 4 cut(s) 45, 301, 380, 453
HinfI GANTC 4 cut(s) 233, 268, 316, 409
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 3 cut(s) 114, 273, 367
Hpy188III TCNNGA 1 cut(s) 344
HpyAV CCTTC 2 cut(s) 329, 362
HpyCH4III ACNGT 3 cut(s) 168, 192, 244
HpyCH4V TGCA 5 cut(s) 188, 260, 289, 301, 449
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpyF3I CTNAG 4 cut(s) 111, 173, 272, 413
Hsp92II CATG 4 cut(s) 45, 301, 380, 453
Ksp22I TGATCA 1 cut(s) 471
Kzo9I GATC 3 cut(s) 181, 396, 471
LmnI GCTCC 1 cut(s) 55
LpnPI CCDG 9 cut(s) 51, 138, 198, 222, 263, 333, 391, 402, 459
Lsp1109I GCAGC 1 cut(s) 313
LweI GCATC 2 cut(s) 186, 371
MaeI CTAG 1 cut(s) 213
MaeIII GTNAC 1 cut(s) 83
MalI GATC 3 cut(s) 183, 398, 473
MboI GATC 3 cut(s) 181, 396, 471
MboII GAAGA 1 cut(s) 338
MlyI GAGTC 1 cut(s) 325
MnlI CCTC 4 cut(s) 82, 267, 351, 450
MseI TTAA 2 cut(s) 74, 434
Mva1269I GAATGC 1 cut(s) 68
MwoI GCNNNNNNNGC 1 cut(s) 47
NdeII GATC 3 cut(s) 181, 396, 471
NlaIII CATG 4 cut(s) 45, 301, 380, 453
PctI GAATGC 1 cut(s) 68
PfeI GAWTC 3 cut(s) 233, 268, 409
PkrI GCNGC 2 cut(s) 20, 303
PleI GAGTC 1 cut(s) 324
PpsI GAGTC 1 cut(s) 324
PpuMI RGGWCCY 1 cut(s) 338
PshBI ATTAAT 1 cut(s) 434
Psp5II RGGWCCY 1 cut(s) 338
PspPI GGNCC 2 cut(s) 209, 338
PspPPI RGGWCCY 1 cut(s) 338
PstNI CAGNNNCTG 1 cut(s) 242
RsaI GTAC 2 cut(s) 241, 382
RsaNI GTAC 2 cut(s) 240, 381
SaqAI TTAA 2 cut(s) 74, 434
SatI GCNGC 2 cut(s) 19, 302
Sau3AI GATC 3 cut(s) 181, 396, 471
Sau96I GGNCC 2 cut(s) 209, 338
SchI GAGTC 1 cut(s) 325
SetI ASST 8 cut(s) 52, 144, 201, 241, 340, 351, 432, 442
SfaNI GCATC 2 cut(s) 186, 371
SfcI CTRYAG 1 cut(s) 355
SinI GGWCC 1 cut(s) 338
SsiI CCGC 1 cut(s) 19
SspMI CTAG 1 cut(s) 213
TaaI ACNGT 3 cut(s) 168, 192, 244
TaqI TCGA 1 cut(s) 180
TauI GCSGC 1 cut(s) 21
TfiI GAWTC 3 cut(s) 233, 268, 409
Tru1I TTAA 2 cut(s) 74, 434
Tru9I TTAA 2 cut(s) 74, 434
TscAI CASTG 3 cut(s) 173, 195, 425
TseI GCWGC 1 cut(s) 301
TspRI CASTG 3 cut(s) 173, 195, 425
VpaK11BI GGWCC 1 cut(s) 338
VspI ATTAAT 1 cut(s) 434
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.