Rh3CG045000

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0009694
Physical Location & Seq
Forward (+)
2997067 .. 2997954
888 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG045000.1

Sequence Viewer

Length: 888 bp
ATGGCTTTGATAACCATCTGCAGCAATATATTGGCTGTCCTCCTGTACATGGTCACTGCAATGCTGCCCATTGGAACCTGTGGTTTTAGTCTCCACCTCACCCAAATCAATTCAGTCTTCCCAACAAATTTCACTCTGGAAGAGAGGCATCAGATGGTTGAAATGTCAAGAAATCGAGCAGAGTTAATGATGAACAATGCAGCCAATGATATAATACAAGCCCCTAGTCTACCTGCTCTAGGCCATTACTACATAATGCGAATGATCATTGGCTCACAACTATATTCACCTCACTTACCGGTGGACACAGGCAGTGATGATACATGGGTTCAGGGTGATGGCTGCAGTAGCTGCTTCCCGGTCAAGATAGGAAATTTCAAATATAAAAATTCCTCATCAAACAGCAAGTTACCATGTACCCACCCACTTTGTGTTCCGAAAGTATGTTCTAGTGATGGGCACTGTCTCTACAAGATCACATACTATGGTGGTGGCAGCAGTGAGGGTTGGGTTTCAAATGACACCCTAACTTTCTTGAGCAGTAAGCGAAAATTTATAAAGTACCCAGCTGTATTTGGTTGCGGCTATAATAATAAGAACATCAGCTTTGGTAAAAATACAGGGAAGATAGCTGGCATCTTTGGTGTAGGGGCAGGGCCGCGGTCCATTCTAATGCAACTAGCTGATCAGACACATGGTCGCTTCTCTTACTGCTTGCCGCCATTGCCTGCACGAAGAGGAGCTCATACATTCTTAAAGTTTGGTGAAGAAGCAACAATAGGAGGACTTGTACGAACCACGAAATTGATCCCTGAGGGCTTTCCTAGATACTATATCAACATGTTGGGTATTAGTATTCAAGGAAAGCCCCAGGAGTGTTTAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

295

Amino Acids

32.34

Weight (kDa)

9.0

Isoelectric Point (pI)

42.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 84 - 255 2.3e-31 Xylanase inhibitor N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 557
Acc36I ACCTGC 1 cut(s) 241
AccI GTMKAC 1 cut(s) 229
AccII CGCG 1 cut(s) 661
AciI CCGC 4 cut(s) 582, 659, 661, 719
AclWI GGATC 1 cut(s) 802
AcsI RAATTY 4 cut(s) 127, 373, 388, 551
AdeI CACNNNGTG 1 cut(s) 431
AfaI GTAC 4 cut(s) 47, 418, 563, 792
AfiI CCNNNNNNNGG 2 cut(s) 49, 239
AflIII ACRYGT 1 cut(s) 840
AgeI ACCGGT 1 cut(s) 298
AgsI TTSAA 4 cut(s) 161, 379, 516, 860
AhdI GACNNNNNGTC 1 cut(s) 696
AjnI CCWGG 1 cut(s) 870
AluBI AGCT 6 cut(s) 351, 569, 606, 632, 683, 743
AluI AGCT 6 cut(s) 351, 569, 606, 632, 683, 743
Alw21I GWGCWC 1 cut(s) 745
Alw26I GTCTC 2 cut(s) 95, 470
AlwI GGATC 1 cut(s) 802
AlwNI CAGNNNCTG 1 cut(s) 351
AoxI GGCC 2 cut(s) 241, 656
ApeKI GCWGC 6 cut(s) 21, 64, 200, 342, 351, 495
ApoI RAATTY 4 cut(s) 127, 373, 388, 551
AsiGI ACCGGT 1 cut(s) 298
AspS9I GGNCC 2 cut(s) 656, 663
AsuC2I CCSGG 1 cut(s) 359
AsuHPI GGTGA 4 cut(s) 91, 279, 347, 776
AvaII GGWCC 1 cut(s) 663
AxyI CCTNAGG 1 cut(s) 813
BaeGI GKGCMC 1 cut(s) 462
BaeI ACNNNNGTAYC 2 cut(s) 312, 345
BanII GRGCYC 1 cut(s) 745
BbsI GAAGAC 1 cut(s) 109
Bbv12I GWGCWC 1 cut(s) 745
BbvI GCAGC 6 cut(s) 33, 51, 212, 329, 338, 507
BccI CCATC 4 cut(s) 23, 148, 332, 449
BciT130I CCWGG 1 cut(s) 872
BclI TGATCA 2 cut(s) 264, 685
BcnI CCSGG 1 cut(s) 359
BcoDI GTCTC 2 cut(s) 95, 470
BfaI CTAG 5 cut(s) 225, 239, 450, 680, 825
BfmI CTRYAG 2 cut(s) 19, 343
BfuAI ACCTGC 1 cut(s) 241
BisI GCNGC 9 cut(s) 22, 65, 201, 343, 352, 496, 583, 659, 719
BlsI GCNGC 9 cut(s) 23, 66, 202, 344, 353, 497, 584, 660, 720
Bme1390I CCNGG 2 cut(s) 359, 872
Bme18I GGWCC 1 cut(s) 663
BmeRI GACNNNNNGTC 1 cut(s) 696
BmgT120I GGNCC 2 cut(s) 656, 663
BmiI GGNNCC 1 cut(s) 76
BmrFI CCNGG 2 cut(s) 359, 872
BmsI GCATC 2 cut(s) 157, 645
BpiI GAAGAC 1 cut(s) 109
BpuEI CTTGAG 1 cut(s) 556
BpuMI CCSGG 1 cut(s) 359
BsaBI GATNNNNATC 1 cut(s) 14
BsaJI CCNNGG 2 cut(s) 659, 870
BsaWI WCCGGW 1 cut(s) 298
BsaXI ACNNNNNCTCC 2 cut(s) 774, 804
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 239
Bse118I RCCGGY 1 cut(s) 298
Bse21I CCTNAGG 1 cut(s) 813
Bse3DI GCAATG 2 cut(s) 66, 722
Bse8I GATNNNNATC 1 cut(s) 14
BseBI CCWGG 1 cut(s) 872
BseDI CCNNGG 2 cut(s) 659, 870
BseJI GATNNNNATC 1 cut(s) 14
BseLI CCNNNNNNNGG 2 cut(s) 49, 239
BseMI GCAATG 2 cut(s) 66, 722
BseMII CTCAG 1 cut(s) 804
BseRI GAGGAG 1 cut(s) 753
BseSI GKGCMC 1 cut(s) 462
BseXI GCAGC 6 cut(s) 33, 51, 212, 329, 338, 507
BseYI CCCAGC 1 cut(s) 565
BsgI GTGCAG 1 cut(s) 714
Bsh1236I CGCG 1 cut(s) 661
BshFI GGCC 2 cut(s) 243, 658
BshTI ACCGGT 1 cut(s) 298
BsiHKAI GWGCWC 1 cut(s) 745
BsiSI CCGG 2 cut(s) 299, 359
BslI CCNNNNNNNGG 2 cut(s) 49, 239
BsmAI GTCTC 2 cut(s) 95, 470
BsnI GGCC 2 cut(s) 243, 658
Bsp1286I GDGCHC 2 cut(s) 462, 745
Bsp1407I TGTACA 1 cut(s) 45
Bsp143I GATC 4 cut(s) 264, 474, 685, 807
BspACI CCGC 4 cut(s) 582, 659, 661, 719
BspANI GGCC 2 cut(s) 243, 658
BspCNI CTCAG 1 cut(s) 805
BspFNI CGCG 1 cut(s) 661
BspLI GGNNCC 1 cut(s) 76
BspMAI CTGCAG 2 cut(s) 23, 347
BspMI ACCTGC 1 cut(s) 241
BspPI GGATC 1 cut(s) 802
BsrDI GCAATG 2 cut(s) 66, 722
BsrFI RCCGGY 1 cut(s) 298
BsrGI TGTACA 1 cut(s) 45
BssAI RCCGGY 1 cut(s) 298
BssECI CCNNGG 2 cut(s) 659, 870
BssMI GATC 4 cut(s) 264, 474, 685, 807
Bst2UI CCWGG 1 cut(s) 872
Bst4CI ACNGT 1 cut(s) 464
Bst6I CTCTTC 2 cut(s) 135, 730
BstAPI GCANNNNNTGC 1 cut(s) 351
BstAUI TGTACA 1 cut(s) 45
BstC8I GCNNGC 3 cut(s) 634, 716, 729
BstDEI CTNAG 1 cut(s) 813
BstDSI CCRYGG 1 cut(s) 659
BstENI CCTNNNNNAGG 1 cut(s) 237
BstFNI CGCG 1 cut(s) 661
BstKTI GATC 4 cut(s) 267, 477, 688, 810
BstMAI GTCTC 2 cut(s) 95, 470
BstMBI GATC 4 cut(s) 264, 474, 685, 807
BstMWI GCNNNNNNNGC 3 cut(s) 348, 351, 724
BstNI CCWGG 1 cut(s) 872
BstNSI RCATGY 1 cut(s) 844
BstSCI CCNGG 2 cut(s) 357, 870
BstSFI CTRYAG 2 cut(s) 19, 343
BstSLI GKGCMC 1 cut(s) 462
BstUI CGCG 1 cut(s) 661
BstV1I GCAGC 6 cut(s) 33, 51, 212, 329, 338, 507
BstV2I GAAGAC 1 cut(s) 109
Bsu36I CCTNAGG 1 cut(s) 813
BsuRI GGCC 2 cut(s) 243, 658
BtgI CCRYGG 1 cut(s) 659
BtsI GCAGTG 3 cut(s) 54, 319, 505
BtsIMutI CAGTG 4 cut(s) 54, 319, 460, 505
BveI ACCTGC 1 cut(s) 241
Cac8I GCNNGC 3 cut(s) 634, 716, 729
CaiI CAGNNNCTG 1 cut(s) 351
Cfr10I RCCGGY 1 cut(s) 298
Cfr13I GGNCC 2 cut(s) 656, 663
Cfr42I CCGCGG 1 cut(s) 662
Csp6I GTAC 4 cut(s) 46, 417, 562, 791
CspAI ACCGGT 1 cut(s) 298
CspCI CAANNNNNGTGG 2 cut(s) 410, 445
CviAII CATG 5 cut(s) 49, 324, 414, 695, 841
CviQI GTAC 4 cut(s) 46, 417, 562, 791
DdeI CTNAG 1 cut(s) 813
DpnI GATC 4 cut(s) 266, 476, 687, 809
DpnII GATC 4 cut(s) 264, 474, 685, 807
DraIII CACNNNGTG 1 cut(s) 431
DriI GACNNNNNGTC 1 cut(s) 696
Eam1104I CTCTTC 2 cut(s) 135, 730
Eam1105I GACNNNNNGTC 1 cut(s) 696
EarI CTCTTC 2 cut(s) 135, 730
Ecl136II GAGCTC 1 cut(s) 743
Eco24I GRGCYC 1 cut(s) 745
Eco47I GGWCC 1 cut(s) 663
Eco53kI GAGCTC 1 cut(s) 743
Eco81I CCTNAGG 1 cut(s) 813
EcoICRI GAGCTC 1 cut(s) 743
EcoNI CCTNNNNNAGG 1 cut(s) 237
EcoRII CCWGG 1 cut(s) 870
EcoT38I GRGCYC 1 cut(s) 745
FaeI CATG 5 cut(s) 52, 327, 417, 698, 844
FatI CATG 5 cut(s) 48, 323, 413, 694, 840
FbaI TGATCA 2 cut(s) 264, 685
FblI GTMKAC 1 cut(s) 229
Fnu4HI GCNGC 9 cut(s) 22, 65, 201, 343, 352, 496, 583, 659, 719
FriOI GRGCYC 1 cut(s) 745
Fsp4HI GCNGC 9 cut(s) 22, 65, 201, 343, 352, 496, 583, 659, 719
FspBI CTAG 5 cut(s) 225, 239, 450, 680, 825
GluI GCNGC 9 cut(s) 22, 65, 201, 343, 352, 496, 583, 659, 719
GsaI CCCAGC 1 cut(s) 569
HaeIII GGCC 2 cut(s) 243, 658
HapII CCGG 2 cut(s) 299, 359
Hin1II CATG 5 cut(s) 52, 327, 417, 698, 844
HpaII CCGG 2 cut(s) 299, 359
HphI GGTGA 4 cut(s) 91, 279, 347, 776
Hpy166II GTNNAC 2 cut(s) 230, 304
Hpy188I TCNGA 3 cut(s) 153, 438, 690
Hpy188III TCNNGA 4 cut(s) 137, 168, 364, 535
Hpy8I GTNNAC 2 cut(s) 230, 304
HpyCH4III ACNGT 1 cut(s) 464
HpyCH4V TGCA 6 cut(s) 21, 59, 200, 345, 676, 731
HpyF10VI GCNNNNNNNGC 3 cut(s) 348, 351, 724
HpyF3I CTNAG 1 cut(s) 813
Hsp92II CATG 5 cut(s) 52, 327, 417, 698, 844
Ksp22I TGATCA 2 cut(s) 264, 685
KspI CCGCGG 1 cut(s) 662
Kzo9I GATC 4 cut(s) 264, 474, 685, 807
LmnI GCTCC 1 cut(s) 740
Lsp1109I GCAGC 6 cut(s) 33, 51, 212, 329, 338, 507
LweI GCATC 2 cut(s) 157, 645
MaeI CTAG 5 cut(s) 225, 239, 450, 680, 825
MaeIII GTNAC 2 cut(s) 52, 408
MalI GATC 4 cut(s) 266, 476, 687, 809
MboI GATC 4 cut(s) 264, 474, 685, 807
MboII GAAGA 5 cut(s) 109, 152, 637, 747, 779
MhlI GDGCHC 2 cut(s) 462, 745
MluCI AATT 6 cut(s) 109, 127, 373, 388, 551, 803
MnlI CCTC 9 cut(s) 50, 107, 138, 300, 403, 496, 731, 776, 808
MseI TTAA 3 cut(s) 185, 755, 881
MslI CAYNNNNRTG 2 cut(s) 59, 671
MspA1I CMGCKG 2 cut(s) 569, 661
MspI CCGG 2 cut(s) 299, 359
MspR9I CCNGG 2 cut(s) 359, 872
MvaI CCWGG 1 cut(s) 872
MvnI CGCG 1 cut(s) 661
MwoI GCNNNNNNNGC 3 cut(s) 348, 351, 724
NciI CCSGG 1 cut(s) 359
NdeII GATC 4 cut(s) 264, 474, 685, 807
NlaIII CATG 5 cut(s) 52, 327, 417, 698, 844
NlaIV GGNNCC 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 52
NspI RCATGY 1 cut(s) 844
PciI ACATGT 1 cut(s) 840
PinAI ACCGGT 1 cut(s) 298
PkrI GCNGC 9 cut(s) 23, 66, 202, 344, 353, 497, 584, 660, 720
PscI ACATGT 1 cut(s) 840
PsiI TTATAA 1 cut(s) 557
Psp124BI GAGCTC 1 cut(s) 745
Psp6I CCWGG 1 cut(s) 870
PspFI CCCAGC 1 cut(s) 565
PspGI CCWGG 1 cut(s) 870
PspN4I GGNNCC 1 cut(s) 76
PspPI GGNCC 2 cut(s) 656, 663
PstI CTGCAG 2 cut(s) 23, 347
PstNI CAGNNNCTG 1 cut(s) 351
PvuII CAGCTG 1 cut(s) 569
RsaI GTAC 4 cut(s) 47, 418, 563, 792
RsaNI GTAC 4 cut(s) 46, 417, 562, 791
RseI CAYNNNNRTG 2 cut(s) 59, 671
SacI GAGCTC 1 cut(s) 745
SacII CCGCGG 1 cut(s) 662
SaqAI TTAA 3 cut(s) 185, 755, 881
SatI GCNGC 9 cut(s) 22, 65, 201, 343, 352, 496, 583, 659, 719
Sau3AI GATC 4 cut(s) 264, 474, 685, 807
Sau96I GGNCC 2 cut(s) 656, 663
ScrFI CCNGG 2 cut(s) 359, 872
SduI GDGCHC 2 cut(s) 462, 745
SfaNI GCATC 2 cut(s) 157, 645
SfcI CTRYAG 2 cut(s) 19, 343
Sfr303I CCGCGG 1 cut(s) 662
SgrBI CCGCGG 1 cut(s) 662
SinI GGWCC 1 cut(s) 663
SmiMI CAYNNNNRTG 2 cut(s) 59, 671
SmlI CTYRAG 1 cut(s) 535
SmoI CTYRAG 1 cut(s) 535
Sse9I AATT 6 cut(s) 109, 127, 373, 388, 551, 803
SsiI CCGC 4 cut(s) 582, 659, 661, 719
SspMI CTAG 5 cut(s) 225, 239, 450, 680, 825
SstI GAGCTC 1 cut(s) 745
StyD4I CCNGG 2 cut(s) 357, 870
TaaI ACNGT 1 cut(s) 464
TaqI TCGA 1 cut(s) 175
TasI AATT 6 cut(s) 109, 127, 373, 388, 551, 803
TatI WGTACW 1 cut(s) 45
TauI GCSGC 3 cut(s) 585, 661, 721
Tru1I TTAA 3 cut(s) 185, 755, 881
Tru9I TTAA 3 cut(s) 185, 755, 881
TscAI CASTG 4 cut(s) 61, 319, 467, 505
TseFI GTSAC 1 cut(s) 52
TseI GCWGC 6 cut(s) 21, 64, 200, 342, 351, 495
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 1 cut(s) 206
TspRI CASTG 4 cut(s) 61, 319, 467, 505
VpaK11BI GGWCC 1 cut(s) 663
XagI CCTNNNNNAGG 1 cut(s) 237
XapI RAATTY 4 cut(s) 127, 373, 388, 551
XceI RCATGY 1 cut(s) 844
XmiI GTMKAC 1 cut(s) 229
XspI CTAG 5 cut(s) 225, 239, 450, 680, 825
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.