RchiOBHm_Chr3g0452601

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0009694
Physical Location & Seq
Forward (+)
3221001 .. 3221744
744 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41974

Sequence Viewer

Length: 744 bp
ATGGCTTTGATAACCATCTGCAGCAATATATTGGCTGTCCTCCTGTACATGGTCACTGCAATGCTGTCCATTGGAACCTGTGGTTTTAGTCGCCACCTCACCCCAATCAATTCAGTCTTCCCAACAAATTTCACTCTGGAAGAGAGGCATCAGATGGTTGAAATGTCAAGAAATCGAGCAGAGTTAATGATGAACAATGCAGCCAATGATATAATACAAGCCCCTATTCTACCTGCTCTAGGCCATTACTACATAACGAGAATGATCATCGCCTCACAACTATATTCACCTAACTTACTGGTGGACACAGGCAGTGATGATACATGGGTTCAGGGATCAGGCTGCAGCAGCTGCTTCCCGGTCAAGATAGGAAATTTCAAATATAAAAATTCCTCATCATACAGCAAGTTACCATGTACACACCCACTTTGTGTTCCGAAAGTATGTTCTAGTGGTGGGCACTGTCTCTACAAGATCGCATCCTATGGTGGTGGCAGCAGTGAGGGTTGGGTTTCAAATGACACCTTCACTTTCTGGAGCAGTAGGCGAAAATTTATAAAGTACACAGCTGCATCTGTTTGTGGCTATGATAATAAGAACATCAGCTTTGGTAAAAATACAGGGAAGATAACTAGCATCTTTGGTTTAGGGGCGGGGCCCAGGTCCATGCTAATGCAACTAGCTTGTCAGACACATGGTCACTTCTCTTATTACTGCTTACCGCCATTGCCTGCACGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

247

Amino Acids

27.15

Weight (kDa)

9.13

Isoelectric Point (pI)

47.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 84 - 240 1.4e-22 Xylanase inhibitor N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 557
Acc36I ACCTGC 1 cut(s) 241
AciI CCGC 2 cut(s) 653, 722
AclWI GGATC 1 cut(s) 343
AcsI RAATTY 4 cut(s) 127, 373, 388, 551
AdeI CACNNNGTG 1 cut(s) 431
AfaI GTAC 3 cut(s) 47, 418, 563
AfiI CCNNNNNNNGG 2 cut(s) 49, 239
AgsI TTSAA 3 cut(s) 161, 379, 516
AhdI GACNNNNNGTC 1 cut(s) 696
AjnI CCWGG 1 cut(s) 659
AluBI AGCT 4 cut(s) 351, 569, 606, 683
AluI AGCT 4 cut(s) 351, 569, 606, 683
Alw26I GTCTC 1 cut(s) 470
AlwI GGATC 1 cut(s) 343
AlwNI CAGNNNCTG 1 cut(s) 351
AoxI GGCC 2 cut(s) 241, 656
ApaI GGGCCC 1 cut(s) 660
ApeKI GCWGC 8 cut(s) 21, 200, 342, 345, 348, 351, 495, 569
ApoI RAATTY 4 cut(s) 127, 373, 388, 551
AspS9I GGNCC 3 cut(s) 656, 657, 663
AsuC2I CCSGG 1 cut(s) 359
AsuHPI GGTGA 2 cut(s) 91, 279
AvaII GGWCC 1 cut(s) 663
BaeGI GKGCMC 2 cut(s) 462, 660
BaeI ACNNNNGTAYC 2 cut(s) 312, 345
BanII GRGCYC 1 cut(s) 660
BbsI GAAGAC 1 cut(s) 109
BbvI GCAGC 8 cut(s) 33, 212, 329, 338, 357, 360, 507, 556
BccI CCATC 2 cut(s) 23, 148
BciT130I CCWGG 1 cut(s) 661
BclI TGATCA 1 cut(s) 264
BcnI CCSGG 1 cut(s) 359
BcoDI GTCTC 1 cut(s) 470
BfaI CTAG 4 cut(s) 239, 450, 633, 680
BfmI CTRYAG 2 cut(s) 19, 343
BfuAI ACCTGC 1 cut(s) 241
BisI GCNGC 8 cut(s) 22, 201, 343, 346, 349, 352, 496, 570
BlsI GCNGC 8 cut(s) 23, 202, 344, 347, 350, 353, 497, 571
Bme1390I CCNGG 2 cut(s) 359, 661
Bme18I GGWCC 1 cut(s) 663
BmeRI GACNNNNNGTC 1 cut(s) 696
BmgT120I GGNCC 3 cut(s) 656, 657, 663
BmiI GGNNCC 3 cut(s) 76, 657, 658
BmrFI CCNGG 2 cut(s) 359, 661
BmsI GCATC 4 cut(s) 157, 488, 581, 645
BpiI GAAGAC 1 cut(s) 109
BpmI CTGGAG 1 cut(s) 556
BpuMI CCSGG 1 cut(s) 359
BsaBI GATNNNNATC 1 cut(s) 14
BsaJI CCNNGG 1 cut(s) 659
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 239
Bse1I ACTGG 1 cut(s) 303
Bse3DI GCAATG 2 cut(s) 66, 725
Bse8I GATNNNNATC 1 cut(s) 14
BseBI CCWGG 1 cut(s) 661
BseDI CCNNGG 1 cut(s) 659
BseGI GGATG 1 cut(s) 479
BseJI GATNNNNATC 1 cut(s) 14
BseLI CCNNNNNNNGG 2 cut(s) 49, 239
BseMI GCAATG 2 cut(s) 66, 725
BseNI ACTGG 1 cut(s) 303
BseSI GKGCMC 2 cut(s) 462, 660
BseXI GCAGC 8 cut(s) 33, 212, 329, 338, 357, 360, 507, 556
BsgI GTGCAG 1 cut(s) 717
BshFI GGCC 2 cut(s) 243, 658
BsiSI CCGG 1 cut(s) 359
BslI CCNNNNNNNGG 2 cut(s) 49, 239
BsmAI GTCTC 1 cut(s) 470
BsnI GGCC 2 cut(s) 243, 658
Bsp120I GGGCCC 1 cut(s) 656
Bsp1286I GDGCHC 2 cut(s) 462, 660
Bsp1407I TGTACA 2 cut(s) 45, 416
Bsp143I GATC 3 cut(s) 264, 335, 474
BspACI CCGC 2 cut(s) 653, 722
BspANI GGCC 2 cut(s) 243, 658
BspLI GGNNCC 3 cut(s) 76, 657, 658
BspMAI CTGCAG 2 cut(s) 23, 347
BspMI ACCTGC 1 cut(s) 241
BspPI GGATC 1 cut(s) 343
BsrDI GCAATG 2 cut(s) 66, 725
BsrGI TGTACA 2 cut(s) 45, 416
BsrI ACTGG 1 cut(s) 303
BssECI CCNNGG 1 cut(s) 659
BssMI GATC 3 cut(s) 264, 335, 474
Bst2UI CCWGG 1 cut(s) 661
Bst4CI ACNGT 1 cut(s) 464
Bst6I CTCTTC 1 cut(s) 135
BstAPI GCANNNNNTGC 1 cut(s) 351
BstAUI TGTACA 2 cut(s) 45, 416
BstC8I GCNNGC 1 cut(s) 732
BstENI CCTNNNNNAGG 1 cut(s) 237
BstF5I GGATG 1 cut(s) 479
BstKTI GATC 3 cut(s) 267, 338, 477
BstMAI GTCTC 1 cut(s) 470
BstMBI GATC 3 cut(s) 264, 335, 474
BstMWI GCNNNNNNNGC 2 cut(s) 348, 351
BstNI CCWGG 1 cut(s) 661
BstSCI CCNGG 2 cut(s) 357, 659
BstSFI CTRYAG 2 cut(s) 19, 343
BstSLI GKGCMC 2 cut(s) 462, 660
BstV1I GCAGC 8 cut(s) 33, 212, 329, 338, 357, 360, 507, 556
BstV2I GAAGAC 1 cut(s) 109
BsuRI GGCC 2 cut(s) 243, 658
BtgZI GCGATG 1 cut(s) 253
BtsCI GGATG 1 cut(s) 479
BtsI GCAGTG 3 cut(s) 54, 319, 505
BtsIMutI CAGTG 4 cut(s) 54, 319, 460, 505
BveI ACCTGC 1 cut(s) 241
Cac8I GCNNGC 1 cut(s) 732
CaiI CAGNNNCTG 1 cut(s) 351
Cfr13I GGNCC 3 cut(s) 656, 657, 663
Csp6I GTAC 3 cut(s) 46, 417, 562
CviAII CATG 5 cut(s) 49, 324, 414, 667, 695
CviQI GTAC 3 cut(s) 46, 417, 562
DpnI GATC 3 cut(s) 266, 337, 476
DpnII GATC 3 cut(s) 264, 335, 474
DraIII CACNNNGTG 1 cut(s) 431
DriI GACNNNNNGTC 1 cut(s) 696
Eam1104I CTCTTC 1 cut(s) 135
Eam1105I GACNNNNNGTC 1 cut(s) 696
EarI CTCTTC 1 cut(s) 135
Eco24I GRGCYC 1 cut(s) 660
Eco47I GGWCC 1 cut(s) 663
EcoNI CCTNNNNNAGG 1 cut(s) 237
EcoO109I RGGNCCY 1 cut(s) 656
EcoRII CCWGG 1 cut(s) 659
EcoT38I GRGCYC 1 cut(s) 660
FaeI CATG 5 cut(s) 52, 327, 417, 670, 698
FatI CATG 5 cut(s) 48, 323, 413, 666, 694
FauI CCCGC 1 cut(s) 646
FbaI TGATCA 1 cut(s) 264
Fnu4HI GCNGC 8 cut(s) 22, 201, 343, 346, 349, 352, 496, 570
FokI GGATG 1 cut(s) 466
FriOI GRGCYC 1 cut(s) 660
Fsp4HI GCNGC 8 cut(s) 22, 201, 343, 346, 349, 352, 496, 570
FspBI CTAG 4 cut(s) 239, 450, 633, 680
GluI GCNGC 8 cut(s) 22, 201, 343, 346, 349, 352, 496, 570
GsuI CTGGAG 1 cut(s) 556
HaeIII GGCC 2 cut(s) 243, 658
HapII CCGG 1 cut(s) 359
Hin1II CATG 5 cut(s) 52, 327, 417, 670, 698
HpaII CCGG 1 cut(s) 359
HphI GGTGA 2 cut(s) 91, 279
Hpy166II GTNNAC 3 cut(s) 304, 419, 564
Hpy188I TCNGA 3 cut(s) 153, 438, 690
Hpy188III TCNNGA 4 cut(s) 137, 168, 364, 535
Hpy8I GTNNAC 3 cut(s) 304, 419, 564
HpyAV CCTTC 1 cut(s) 535
HpyCH4III ACNGT 1 cut(s) 464
HpyCH4V TGCA 7 cut(s) 21, 59, 200, 345, 572, 676, 734
HpyF10VI GCNNNNNNNGC 2 cut(s) 348, 351
Hsp92II CATG 5 cut(s) 52, 327, 417, 670, 698
Ksp22I TGATCA 1 cut(s) 264
Kzo9I GATC 3 cut(s) 264, 335, 474
LmnI GCTCC 1 cut(s) 537
Lsp1109I GCAGC 8 cut(s) 33, 212, 329, 338, 357, 360, 507, 556
LweI GCATC 4 cut(s) 157, 488, 581, 645
MaeI CTAG 4 cut(s) 239, 450, 633, 680
MaeIII GTNAC 3 cut(s) 52, 408, 698
MalI GATC 3 cut(s) 266, 337, 476
MboI GATC 3 cut(s) 264, 335, 474
MboII GAAGA 3 cut(s) 109, 152, 637
MhlI GDGCHC 2 cut(s) 462, 660
MluCI AATT 5 cut(s) 109, 127, 373, 388, 551
MnlI CCTC 6 cut(s) 50, 107, 138, 283, 403, 496
MseI TTAA 1 cut(s) 185
MslI CAYNNNNRTG 3 cut(s) 59, 671, 739
MspA1I CMGCKG 2 cut(s) 351, 569
MspI CCGG 1 cut(s) 359
MspR9I CCNGG 2 cut(s) 359, 661
MvaI CCWGG 1 cut(s) 661
MwoI GCNNNNNNNGC 2 cut(s) 348, 351
NciI CCSGG 1 cut(s) 359
NdeII GATC 3 cut(s) 264, 335, 474
NlaIII CATG 5 cut(s) 52, 327, 417, 670, 698
NlaIV GGNNCC 3 cut(s) 76, 657, 658
NmuCI GTSAC 2 cut(s) 52, 698
PkrI GCNGC 8 cut(s) 23, 202, 344, 347, 350, 353, 497, 571
PsiI TTATAA 1 cut(s) 557
Psp6I CCWGG 1 cut(s) 659
PspGI CCWGG 1 cut(s) 659
PspN4I GGNNCC 3 cut(s) 76, 657, 658
PspOMI GGGCCC 1 cut(s) 656
PspPI GGNCC 3 cut(s) 656, 657, 663
PstI CTGCAG 2 cut(s) 23, 347
PstNI CAGNNNCTG 1 cut(s) 351
PvuII CAGCTG 2 cut(s) 351, 569
RsaI GTAC 3 cut(s) 47, 418, 563
RsaNI GTAC 3 cut(s) 46, 417, 562
RseI CAYNNNNRTG 3 cut(s) 59, 671, 739
SaqAI TTAA 1 cut(s) 185
SatI GCNGC 8 cut(s) 22, 201, 343, 346, 349, 352, 496, 570
Sau3AI GATC 3 cut(s) 264, 335, 474
Sau96I GGNCC 3 cut(s) 656, 657, 663
ScrFI CCNGG 2 cut(s) 359, 661
SduI GDGCHC 2 cut(s) 462, 660
SfaNI GCATC 4 cut(s) 157, 488, 581, 645
SfcI CTRYAG 2 cut(s) 19, 343
SinI GGWCC 1 cut(s) 663
SmiMI CAYNNNNRTG 3 cut(s) 59, 671, 739
Sse9I AATT 5 cut(s) 109, 127, 373, 388, 551
SsiI CCGC 2 cut(s) 653, 722
SspMI CTAG 4 cut(s) 239, 450, 633, 680
StyD4I CCNGG 2 cut(s) 357, 659
TaaI ACNGT 1 cut(s) 464
TaqI TCGA 1 cut(s) 175
TasI AATT 5 cut(s) 109, 127, 373, 388, 551
TatI WGTACW 3 cut(s) 45, 416, 561
Tru1I TTAA 1 cut(s) 185
Tru9I TTAA 1 cut(s) 185
TscAI CASTG 4 cut(s) 61, 319, 467, 505
TseFI GTSAC 2 cut(s) 52, 698
TseI GCWGC 8 cut(s) 21, 200, 342, 345, 348, 351, 495, 569
Tsp45I GTSAC 2 cut(s) 52, 698
TspDTI ATGAA 1 cut(s) 206
TspRI CASTG 4 cut(s) 61, 319, 467, 505
VpaK11BI GGWCC 1 cut(s) 663
XagI CCTNNNNNAGG 1 cut(s) 237
XapI RAATTY 4 cut(s) 127, 373, 388, 551
XspI CTAG 4 cut(s) 239, 450, 633, 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.