Rh3DG045300

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0009694
Physical Location & Seq
Forward (+)
2997253 .. 2997954
702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG045300.1

Sequence Viewer

Length: 702 bp
ATGATGAACAATGCAGCCAATGATATAATACAAGCCCCTAGTCTACCTGCTCTAGGCCATTACTACATAATGCGAATGATCATTGGCTCACAACTATATTCACCTCACTTACCGGTGGACACAGGCAGTGATGATACATGGGTTCAGGGTGATGGCTGCAGTAGCTGCTTCCCGGTCAAGATAGGAAATTTCAAATATAAAAATTCCTCATCAAACAGCAAGTTACCATGTACCCACCCACTTTGTGTTCCGAAAGTATGTTCTAGTGATGGGCACTGTCTCTACAAGATCACATACTATGGTGGTGGCAGCAGTGAGGGTTGGGTTTCAAATGACACCCTAACTTTCTTGAGCAGTAAGCGAAAATTTATAAAGTACCCAGCTGTATTTGGTTGCGGCTATAATAATAAGAACATCAGCTTTGGTAAAAATACAGGGAAGATAGCTGGCATCTTTGGTGTAGGGGCAGGGCCGCGGTCCATTCTAATGCAACTAGCTGATCAGACACATGGTCGCTTCTCTTACTGCTTGCCGCCATTGCCTGCACGAAGAGGAGCTCATACATTCTTAAAGTTTGGTGAAGAAGCAACAATAGGAGGACTTGTACGAACCACGAAATTGATCCCTGAGGGCTTTCCTAGATACTATATCAACATGTTGGGTATTAGTATTCAAGGAAAGCCCCAGGAGTGTTTAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

233

Amino Acids

25.37

Weight (kDa)

9.18

Isoelectric Point (pI)

40.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 22 - 193 1.1e-31 Xylanase inhibitor N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 371
Acc36I ACCTGC 1 cut(s) 55
AccI GTMKAC 1 cut(s) 43
AccII CGCG 1 cut(s) 475
AciI CCGC 4 cut(s) 396, 473, 475, 533
AclWI GGATC 1 cut(s) 616
AcsI RAATTY 3 cut(s) 187, 202, 365
AdeI CACNNNGTG 1 cut(s) 245
AfaI GTAC 3 cut(s) 232, 377, 606
AfiI CCNNNNNNNGG 1 cut(s) 53
AflIII ACRYGT 1 cut(s) 654
AgeI ACCGGT 1 cut(s) 112
AgsI TTSAA 3 cut(s) 193, 330, 674
AhdI GACNNNNNGTC 1 cut(s) 510
AjnI CCWGG 1 cut(s) 684
AluBI AGCT 6 cut(s) 165, 383, 420, 446, 497, 557
AluI AGCT 6 cut(s) 165, 383, 420, 446, 497, 557
Alw21I GWGCWC 1 cut(s) 559
Alw26I GTCTC 1 cut(s) 284
AlwI GGATC 1 cut(s) 616
AlwNI CAGNNNCTG 1 cut(s) 165
AoxI GGCC 2 cut(s) 55, 470
ApeKI GCWGC 4 cut(s) 14, 156, 165, 309
ApoI RAATTY 3 cut(s) 187, 202, 365
AsiGI ACCGGT 1 cut(s) 112
AspS9I GGNCC 2 cut(s) 470, 477
AsuC2I CCSGG 1 cut(s) 173
AsuHPI GGTGA 3 cut(s) 93, 161, 590
AvaII GGWCC 1 cut(s) 477
AxyI CCTNAGG 1 cut(s) 627
BaeGI GKGCMC 1 cut(s) 276
BaeI ACNNNNGTAYC 2 cut(s) 126, 159
BanII GRGCYC 1 cut(s) 559
Bbv12I GWGCWC 1 cut(s) 559
BbvI GCAGC 4 cut(s) 26, 143, 152, 321
BccI CCATC 2 cut(s) 146, 263
BciT130I CCWGG 1 cut(s) 686
BclI TGATCA 2 cut(s) 78, 499
BcnI CCSGG 1 cut(s) 173
BcoDI GTCTC 1 cut(s) 284
BfaI CTAG 5 cut(s) 39, 53, 264, 494, 639
BfmI CTRYAG 1 cut(s) 157
BfuAI ACCTGC 1 cut(s) 55
BisI GCNGC 7 cut(s) 15, 157, 166, 310, 397, 473, 533
BlsI GCNGC 7 cut(s) 16, 158, 167, 311, 398, 474, 534
Bme1390I CCNGG 2 cut(s) 173, 686
Bme18I GGWCC 1 cut(s) 477
BmeRI GACNNNNNGTC 1 cut(s) 510
BmgT120I GGNCC 2 cut(s) 470, 477
BmrFI CCNGG 2 cut(s) 173, 686
BmsI GCATC 1 cut(s) 459
BpuEI CTTGAG 1 cut(s) 370
BpuMI CCSGG 1 cut(s) 173
BsaJI CCNNGG 2 cut(s) 473, 684
BsaWI WCCGGW 1 cut(s) 112
BsaXI ACNNNNNCTCC 2 cut(s) 588, 618
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse118I RCCGGY 1 cut(s) 112
Bse21I CCTNAGG 1 cut(s) 627
Bse3DI GCAATG 1 cut(s) 536
BseBI CCWGG 1 cut(s) 686
BseDI CCNNGG 2 cut(s) 473, 684
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMI GCAATG 1 cut(s) 536
BseMII CTCAG 1 cut(s) 618
BseRI GAGGAG 1 cut(s) 567
BseSI GKGCMC 1 cut(s) 276
BseXI GCAGC 4 cut(s) 26, 143, 152, 321
BseYI CCCAGC 1 cut(s) 379
BsgI GTGCAG 1 cut(s) 528
Bsh1236I CGCG 1 cut(s) 475
BshFI GGCC 2 cut(s) 57, 472
BshTI ACCGGT 1 cut(s) 112
BsiHKAI GWGCWC 1 cut(s) 559
BsiSI CCGG 2 cut(s) 113, 173
BslI CCNNNNNNNGG 1 cut(s) 53
BsmAI GTCTC 1 cut(s) 284
BsnI GGCC 2 cut(s) 57, 472
Bsp1286I GDGCHC 2 cut(s) 276, 559
Bsp143I GATC 4 cut(s) 78, 288, 499, 621
BspACI CCGC 4 cut(s) 396, 473, 475, 533
BspANI GGCC 2 cut(s) 57, 472
BspCNI CTCAG 1 cut(s) 619
BspFNI CGCG 1 cut(s) 475
BspMAI CTGCAG 1 cut(s) 161
BspMI ACCTGC 1 cut(s) 55
BspPI GGATC 1 cut(s) 616
BsrDI GCAATG 1 cut(s) 536
BsrFI RCCGGY 1 cut(s) 112
BssAI RCCGGY 1 cut(s) 112
BssECI CCNNGG 2 cut(s) 473, 684
BssMI GATC 4 cut(s) 78, 288, 499, 621
Bst2UI CCWGG 1 cut(s) 686
Bst4CI ACNGT 1 cut(s) 278
Bst6I CTCTTC 1 cut(s) 544
BstAPI GCANNNNNTGC 1 cut(s) 165
BstC8I GCNNGC 3 cut(s) 448, 530, 543
BstDEI CTNAG 1 cut(s) 627
BstDSI CCRYGG 1 cut(s) 473
BstENI CCTNNNNNAGG 1 cut(s) 51
BstFNI CGCG 1 cut(s) 475
BstKTI GATC 4 cut(s) 81, 291, 502, 624
BstMAI GTCTC 1 cut(s) 284
BstMBI GATC 4 cut(s) 78, 288, 499, 621
BstMWI GCNNNNNNNGC 3 cut(s) 162, 165, 538
BstNI CCWGG 1 cut(s) 686
BstNSI RCATGY 1 cut(s) 658
BstSCI CCNGG 2 cut(s) 171, 684
BstSFI CTRYAG 1 cut(s) 157
BstSLI GKGCMC 1 cut(s) 276
BstUI CGCG 1 cut(s) 475
BstV1I GCAGC 4 cut(s) 26, 143, 152, 321
Bsu36I CCTNAGG 1 cut(s) 627
BsuRI GGCC 2 cut(s) 57, 472
BtgI CCRYGG 1 cut(s) 473
BtsI GCAGTG 2 cut(s) 133, 319
BtsIMutI CAGTG 3 cut(s) 133, 274, 319
BveI ACCTGC 1 cut(s) 55
Cac8I GCNNGC 3 cut(s) 448, 530, 543
CaiI CAGNNNCTG 1 cut(s) 165
Cfr10I RCCGGY 1 cut(s) 112
Cfr13I GGNCC 2 cut(s) 470, 477
Cfr42I CCGCGG 1 cut(s) 476
Csp6I GTAC 3 cut(s) 231, 376, 605
CspAI ACCGGT 1 cut(s) 112
CspCI CAANNNNNGTGG 2 cut(s) 224, 259
CviAII CATG 4 cut(s) 138, 228, 509, 655
CviQI GTAC 3 cut(s) 231, 376, 605
DdeI CTNAG 1 cut(s) 627
DpnI GATC 4 cut(s) 80, 290, 501, 623
DpnII GATC 4 cut(s) 78, 288, 499, 621
DraIII CACNNNGTG 1 cut(s) 245
DriI GACNNNNNGTC 1 cut(s) 510
Eam1104I CTCTTC 1 cut(s) 544
Eam1105I GACNNNNNGTC 1 cut(s) 510
EarI CTCTTC 1 cut(s) 544
Ecl136II GAGCTC 1 cut(s) 557
Eco24I GRGCYC 1 cut(s) 559
Eco47I GGWCC 1 cut(s) 477
Eco53kI GAGCTC 1 cut(s) 557
Eco81I CCTNAGG 1 cut(s) 627
EcoICRI GAGCTC 1 cut(s) 557
EcoNI CCTNNNNNAGG 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 684
EcoT38I GRGCYC 1 cut(s) 559
FaeI CATG 4 cut(s) 141, 231, 512, 658
FatI CATG 4 cut(s) 137, 227, 508, 654
FbaI TGATCA 2 cut(s) 78, 499
FblI GTMKAC 1 cut(s) 43
Fnu4HI GCNGC 7 cut(s) 15, 157, 166, 310, 397, 473, 533
FriOI GRGCYC 1 cut(s) 559
Fsp4HI GCNGC 7 cut(s) 15, 157, 166, 310, 397, 473, 533
FspBI CTAG 5 cut(s) 39, 53, 264, 494, 639
GluI GCNGC 7 cut(s) 15, 157, 166, 310, 397, 473, 533
GsaI CCCAGC 1 cut(s) 383
HaeIII GGCC 2 cut(s) 57, 472
HapII CCGG 2 cut(s) 113, 173
Hin1II CATG 4 cut(s) 141, 231, 512, 658
HpaII CCGG 2 cut(s) 113, 173
HphI GGTGA 3 cut(s) 93, 161, 590
Hpy166II GTNNAC 2 cut(s) 44, 118
Hpy188I TCNGA 2 cut(s) 252, 504
Hpy188III TCNNGA 2 cut(s) 178, 349
Hpy8I GTNNAC 2 cut(s) 44, 118
HpyCH4III ACNGT 1 cut(s) 278
HpyCH4V TGCA 4 cut(s) 14, 159, 490, 545
HpyF10VI GCNNNNNNNGC 3 cut(s) 162, 165, 538
HpyF3I CTNAG 1 cut(s) 627
Hsp92II CATG 4 cut(s) 141, 231, 512, 658
Ksp22I TGATCA 2 cut(s) 78, 499
KspI CCGCGG 1 cut(s) 476
Kzo9I GATC 4 cut(s) 78, 288, 499, 621
LmnI GCTCC 1 cut(s) 554
Lsp1109I GCAGC 4 cut(s) 26, 143, 152, 321
LweI GCATC 1 cut(s) 459
MaeI CTAG 5 cut(s) 39, 53, 264, 494, 639
MaeIII GTNAC 1 cut(s) 222
MalI GATC 4 cut(s) 80, 290, 501, 623
MboI GATC 4 cut(s) 78, 288, 499, 621
MboII GAAGA 3 cut(s) 451, 561, 593
MhlI GDGCHC 2 cut(s) 276, 559
MluCI AATT 4 cut(s) 187, 202, 365, 617
MnlI CCTC 6 cut(s) 114, 217, 310, 545, 590, 622
MseI TTAA 2 cut(s) 569, 695
MslI CAYNNNNRTG 1 cut(s) 485
MspA1I CMGCKG 2 cut(s) 383, 475
MspI CCGG 2 cut(s) 113, 173
MspR9I CCNGG 2 cut(s) 173, 686
MvaI CCWGG 1 cut(s) 686
MvnI CGCG 1 cut(s) 475
MwoI GCNNNNNNNGC 3 cut(s) 162, 165, 538
NciI CCSGG 1 cut(s) 173
NdeII GATC 4 cut(s) 78, 288, 499, 621
NlaIII CATG 4 cut(s) 141, 231, 512, 658
NspI RCATGY 1 cut(s) 658
PciI ACATGT 1 cut(s) 654
PinAI ACCGGT 1 cut(s) 112
PkrI GCNGC 7 cut(s) 16, 158, 167, 311, 398, 474, 534
PscI ACATGT 1 cut(s) 654
PsiI TTATAA 1 cut(s) 371
Psp124BI GAGCTC 1 cut(s) 559
Psp6I CCWGG 1 cut(s) 684
PspFI CCCAGC 1 cut(s) 379
PspGI CCWGG 1 cut(s) 684
PspPI GGNCC 2 cut(s) 470, 477
PstI CTGCAG 1 cut(s) 161
PstNI CAGNNNCTG 1 cut(s) 165
PvuII CAGCTG 1 cut(s) 383
RsaI GTAC 3 cut(s) 232, 377, 606
RsaNI GTAC 3 cut(s) 231, 376, 605
RseI CAYNNNNRTG 1 cut(s) 485
SacI GAGCTC 1 cut(s) 559
SacII CCGCGG 1 cut(s) 476
SaqAI TTAA 2 cut(s) 569, 695
SatI GCNGC 7 cut(s) 15, 157, 166, 310, 397, 473, 533
Sau3AI GATC 4 cut(s) 78, 288, 499, 621
Sau96I GGNCC 2 cut(s) 470, 477
ScrFI CCNGG 2 cut(s) 173, 686
SduI GDGCHC 2 cut(s) 276, 559
SetI ASST 8 cut(s) 49, 106, 167, 385, 422, 448, 499, 559
SfaNI GCATC 1 cut(s) 459
SfcI CTRYAG 1 cut(s) 157
Sfr303I CCGCGG 1 cut(s) 476
SgrBI CCGCGG 1 cut(s) 476
SinI GGWCC 1 cut(s) 477
SmiMI CAYNNNNRTG 1 cut(s) 485
SmlI CTYRAG 1 cut(s) 349
SmoI CTYRAG 1 cut(s) 349
Sse9I AATT 4 cut(s) 187, 202, 365, 617
SsiI CCGC 4 cut(s) 396, 473, 475, 533
SspMI CTAG 5 cut(s) 39, 53, 264, 494, 639
SstI GAGCTC 1 cut(s) 559
StyD4I CCNGG 2 cut(s) 171, 684
TaaI ACNGT 1 cut(s) 278
TasI AATT 4 cut(s) 187, 202, 365, 617
TauI GCSGC 3 cut(s) 399, 475, 535
Tru1I TTAA 2 cut(s) 569, 695
Tru9I TTAA 2 cut(s) 569, 695
TscAI CASTG 3 cut(s) 133, 281, 319
TseI GCWGC 4 cut(s) 14, 156, 165, 309
TspDTI ATGAA 1 cut(s) 20
TspRI CASTG 3 cut(s) 133, 281, 319
VpaK11BI GGWCC 1 cut(s) 477
XagI CCTNNNNNAGG 1 cut(s) 51
XapI RAATTY 3 cut(s) 187, 202, 365
XceI RCATGY 1 cut(s) 658
XmiI GTMKAC 1 cut(s) 43
XspI CTAG 5 cut(s) 39, 53, 264, 494, 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.